@jbrowse/plugin-data-management 2.3.3 → 2.3.4

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map

@@ -0,0 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts

@@ -0,0 +1,10 @@
+/// <reference types="react" />
+import { NodeData } from '../util';
+export default function Node({ data, isOpen, style, setOpen, }: {
+    data: NodeData;
+    isOpen: boolean;
+    style?: {
+        height: number;
+    };
+    setOpen: (arg: boolean) => void;
+}): JSX.Element;

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js

@@ -0,0 +1,48 @@
+import React from 'react';
+import { makeStyles } from 'tss-react/mui';
+// locals
+import Category from './TrackCategory';
+import TrackLabel from './TrackLabel';
+const useStyles = makeStyles()(theme => ({
+    // this accordionBase element's small padding is used to give a margin to
+    // accordionColor it a "margin" because the virtualized elements can't really
+    // use margin in a conventional way (it doesn't affect layout)
+    accordionBase: {
+        display: 'flex',
+    },
+    accordionCard: {
+        padding: 3,
+        cursor: 'pointer',
+        display: 'flex',
+    },
+    nestingLevelMarker: {
+        position: 'absolute',
+        borderLeft: '1.5px solid #555',
+    },
+    // accordionColor set's display:flex so that the child accordionText use
+    // vertically centered text
+    accordionColor: {
+        background: theme.palette.tertiary.main,
+        color: theme.palette.tertiary.contrastText,
+        width: '100%',
+        display: 'flex',
+        paddingLeft: 5,
+    },
+}));
+// An individual node in the track selector. Note: manually sets cursor:
+// pointer improves usability for what can be clicked
+export default function Node({ data, isOpen, style, setOpen, }) {
+    const { isLeaf, nestingLevel } = data;
+    const { classes } = useStyles();
+    const width = 10;
+    const marginLeft = nestingLevel * width + (isLeaf ? width : 0);
+    return (React.createElement("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined },
+        new Array(nestingLevel).fill(0).map((_, idx) => (React.createElement("div", { key: `mark-${idx}`, style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }))),
+        React.createElement("div", { className: !isLeaf ? classes.accordionCard : undefined, style: {
+                marginLeft,
+                whiteSpace: 'nowrap',
+                width: '100%',
+            } },
+            React.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (React.createElement(Category, { isOpen: isOpen, data: data, setOpen: setOpen })) : (React.createElement(TrackLabel, { data: data }))))));
+}
+//# sourceMappingURL=TrackListNode.js.map

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TrackListNode.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,SAAS;AACT,OAAO,QAAQ,MAAM,iBAAiB,CAAA;AACtC,OAAO,UAAU,MAAM,cAAc,CAAA;AAGrC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,yEAAyE;IACzE,6EAA6E;IAC7E,8DAA8D;IAC9D,aAAa,EAAE;QACb,OAAO,EAAE,MAAM;KAChB;IAED,aAAa,EAAE;QACb,OAAO,EAAE,CAAC;QACV,MAAM,EAAE,SAAS;QACjB,OAAO,EAAE,MAAM;KAChB;IAED,kBAAkB,EAAE;QAClB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,kBAAkB;KAC/B;IACD,wEAAwE;IACxE,2BAA2B;IAC3B,cAAc,EAAE;QACd,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI;QACvC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,YAAY;QAC1C,KAAK,EAAE,MAAM;QACb,OAAO,EAAE,MAAM;QACf,WAAW,EAAE,CAAC;KACf;CACF,CAAC,CAAC,CAAA;AAEH,wEAAwE;AACxE,qDAAqD;AACrD,MAAM,CAAC,OAAO,UAAU,IAAI,CAAC,EAC3B,IAAI,EACJ,MAAM,EACN,KAAK,EACL,OAAO,GAMR;IACC,MAAM,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,IAAI,CAAA;IAErC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,MAAM,UAAU,GAAG,YAAY,GAAG,KAAK,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAE9D,OAAO,CACL,6BAAK,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS;QACtE,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAC/C,6BACE,GAAG,EAAE,QAAQ,GAAG,EAAE,EAClB,KAAK,EAAE,EAAE,IAAI,EAAE,GAAG,GAAG,KAAK,GAAG,CAAC,EAAE,MAAM,EAAE,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,MAAM,EAAE,EACvD,SAAS,EAAE,OAAO,CAAC,kBAAkB,GACrC,CACH,CAAC;QACF,6BACE,SAAS,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS,EACtD,KAAK,EAAE;gBACL,UAAU;gBACV,UAAU,EAAE,QAAQ;gBACpB,KAAK,EAAE,MAAM;aACd;YAED,6BAAK,SAAS,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,IACzD,CAAC,MAAM,CAAC,CAAC,CAAC,CACT,oBAAC,QAAQ,IAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,GAAI,CAC3D,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI,CAC3B,CACG,CACF,CACF,CACP,CAAA;AACH,CAAC"}

package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts

@@ -1,3 +1,19 @@
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import { TreeNode } from '../model';
+import { HierarchicalTrackSelectorModel, TreeNode } from '../model';
+export interface NodeData {
+    nestingLevel: number;
+    checked: boolean;
+    conf: AnyConfigurationModel;
+    drawerPosition: unknown;
+    id: string;
+    isLeaf: boolean;
+    name: string;
+    onChange: Function;
+    toggleCollapse: (arg: string) => void;
+    tree: TreeNode;
+    selected: boolean;
+    model: HierarchicalTrackSelectorModel;
+}
 export declare function getAllChildren(subtree?: TreeNode): AnyConfigurationModel[];
+export declare function treeToMap(tree: TreeNode, map?: Map<string, TreeNode>): Map<string, TreeNode>;
+export declare function isUnsupported(name?: string): boolean;

package/esm/HierarchicalTrackSelectorWidget/components/util.js

@@ -2,4 +2,17 @@ export function getAllChildren(subtree) {
     // @ts-ignore
     return ((subtree === null || subtree === void 0 ? void 0 : subtree.children.map(t => t.children.length ? getAllChildren(t) : t.conf)) || []).flat(Infinity);
 }
+export function treeToMap(tree, map = new Map()) {
+    if (tree.id && tree.children.length) {
+        map.set(tree.id, tree);
+    }
+    for (let i = 0; i < tree.children.length; i++) {
+        const node = tree.children[i];
+        treeToMap(node, map);
+    }
+    return map;
+}
+export function isUnsupported(name = '') {
+    return name.endsWith('(Unsupported)') || name.endsWith('(Unknown)');
+}
 //# sourceMappingURL=util.js.map

package/esm/HierarchicalTrackSelectorWidget/components/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/util.ts"],"names":[],"mappings":"AAkBA,MAAM,UAAU,cAAc,CAAC,OAAkB;IAC/C,aAAa;IACb,OAAO,CACL,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACxB,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC,IAA8B,CAC1E,KAAI,EAAE,CACR,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAA;AAClB,CAAC;AAED,MAAM,UAAU,SAAS,CAAC,IAAc,EAAE,MAAM,IAAI,GAAG,EAAoB;IACzE,IAAI,IAAI,CAAC,EAAE,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE;QACnC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,CAAA;KACvB;IACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC7C,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QAC7B,SAAS,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;KACrB;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,IAAI,GAAG,EAAE;IACrC,OAAO,IAAI,CAAC,QAAQ,CAAC,eAAe,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAA;AACrE,CAAC"}

package/esm/HierarchicalTrackSelectorWidget/model.d.ts

@@ -1,6 +1,8 @@
 import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { AbstractSessionModel } from '@jbrowse/core/util';
 import PluginManager from '@jbrowse/core/PluginManager';
+export declare function matches(query: string, conf: AnyConfigurationModel, session: AbstractSessionModel): any;
 export type TreeNode = {
     name: string;
     id: string;
@@ -16,7 +18,6 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
     collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
-    filterText: import("mobx-state-tree").IType<string | undefined, string, string>;
     view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
 }, {
     selection: ({
@@ -24,7 +25,9 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+    filterText: string;
 } & {
+    setSelection(elt: AnyConfigurationModel[]): void;
     addToSelection(elt: AnyConfigurationModel[]): void;
     removeFromSelection(elt: AnyConfigurationModel[]): void;
     clearSelection(): void;

package/esm/HierarchicalTrackSelectorWidget/model.js

@@ -6,11 +6,11 @@ import { ElementId } from '@jbrowse/core/util/types/mst';
 function hasAnyOverlap(a1 = [], a2 = []) {
     return !!a1.find(value => a2.includes(value));
 }
-function passesFilter(filter, config, session) {
-    const categories = readConfObject(config, 'category');
-    const filterLower = filter.toLowerCase();
-    return (getTrackName(config, session).toLowerCase().includes(filterLower) ||
-        !!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
+export function matches(query, conf, session) {
+    const categories = readConfObject(conf, 'category');
+    const queryLower = query.toLowerCase();
+    return (getTrackName(conf, session).toLowerCase().includes(queryLower) ||
+        !!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(queryLower)).length));
 }
 function filterTracks(tracks, self, assemblyName) {
     const { assemblyManager } = getSession(self);
@@ -34,7 +34,7 @@ export function generateHierarchy(model, trackConfigurations, collapsed, extra)
     const { filterText, view } = model;
     const session = getSession(model);
     trackConfigurations
-        .filter(conf => passesFilter(filterText, conf, session))
+        .filter(conf => matches(filterText, conf, session))
         .forEach(conf => {
         // copy the categories since this array can be mutated downstream
         const categories = [...(readConfObject(conf, 'category') || [])];
@@ -82,13 +82,16 @@ export default function stateTreeFactory(pluginManager) {
         id: ElementId,
         type: types.literal('HierarchicalTrackSelectorWidget'),
         collapsed: types.map(types.boolean),
-        filterText: '',
         view: types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
     })
         .volatile(() => ({
         selection: [],
+        filterText: '',
     }))
         .actions(self => ({
+        setSelection(elt) {
+            self.selection = elt;
+        },
         addToSelection(elt) {
             self.selection = dedupe([...self.selection, ...elt], e => e.trackId);
         },

package/esm/HierarchicalTrackSelectorWidget/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,WAAW,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAEL,MAAM,EACN,UAAU,EACV,MAAM,GACP,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,MAAM,UAAU,OAAO,CACrB,KAAa,EACb,IAA2B,EAC3B,OAA6B;IAE7B,MAAM,UAAU,GAAG,cAAc,CAAC,IAAI,EAAE,UAAU,CAAyB,CAAA;IAC3E,MAAM,UAAU,GAAG,KAAK,CAAC,WAAW,EAAE,CAAA;IACtC,OAAO,CACL,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,UAAU,CAAC;QAC9D,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE,MAAM,CAAA,CACvE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD,EACxD,KAAc;IAEd,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,UAAU,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;SAClD,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,KAAK,GAAG,GAAG,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC7D,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;YACjC,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;QACxC,UAAU,EAAE,EAAE;KACf,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,YAAY,CAAC,GAA4B;YACvC,IAAI,CAAC,SAAS,GAAG,GAAG,CAAA;QACtB,CAAC;QACD,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QACtE,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.3.3",
+  "version": "2.3.4",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -39,6 +39,7 @@
   "dependencies": {
     "@gmod/ucsc-hub": "^0.1.6",
     "@mui/icons-material": "^5.0.1",
+    "@mui/x-data-grid": "^5.0.1",
     "clsx": "^1.1.0",
     "react-virtualized-auto-sizer": "^1.0.2",
     "react-vtree": "^3.0.0-beta.1",
@@ -60,5 +61,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "283e0387ccd5acc9f092cf00804d1fcac212e68d"
+  "gitHead": "98ae48be91ee2371e1b2768a907b4997995e9915"
 }

package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx

@@ -32,15 +32,12 @@ const useStyles = makeStyles()(theme => ({
     backgroundColor: theme.palette.background.default,
   },
   button: {
-    marginTop: theme.spacing(1),
     marginRight: theme.spacing(1),
   },
   actionsContainer: {
+    marginTop: theme.spacing(10),
     marginBottom: theme.spacing(2),
   },
-  stepContent: {
-    margin: theme.spacing(1),
-  },
   alertContainer: {
     padding: `${theme.spacing(2)}px 0px ${theme.spacing(2)}px 0px`,
   },

package/src/AddTrackWidget/components/TrackSourceSelect.tsx

@@ -1,5 +1,6 @@
 import React from 'react'
 import { FileSelector } from '@jbrowse/core/ui'
+import { AbstractRootModel } from '@jbrowse/core/util'
 import { Paper } from '@mui/material'
 import { makeStyles } from 'tss-react/mui'
 import { getRoot } from 'mobx-state-tree'
@@ -10,9 +11,7 @@ import { AddTrackModel } from '../model'
 
 const useStyles = makeStyles()(theme => ({
   paper: {
-    display: 'flex',
-    flexDirection: 'column',
-    padding: theme.spacing(1),
+    padding: theme.spacing(2),
   },
   spacer: {
     height: theme.spacing(8),
@@ -21,8 +20,7 @@ const useStyles = makeStyles()(theme => ({
 
 function TrackSourceSelect({ model }: { model: AddTrackModel }) {
   const { classes } = useStyles()
-  // eslint-disable-next-line @typescript-eslint/no-explicit-any
-  const rootModel = getRoot<any>(model)
+  const rootModel = getRoot<AbstractRootModel>(model)
 
   return (
     <Paper className={classes.paper}>

package/src/HierarchicalTrackSelectorWidget/components/HierarchicalFab.tsx

@@ -0,0 +1,94 @@
+import React, { useState } from 'react'
+import { Fab, Menu, MenuItem } from '@mui/material'
+import { makeStyles } from 'tss-react/mui'
+import {
+  getSession,
+  isSessionModelWithWidgets,
+  isSessionModelWithConnections,
+  isSessionWithAddTracks,
+} from '@jbrowse/core/util'
+import { observer } from 'mobx-react'
+
+// icons
+import AddIcon from '@mui/icons-material/Add'
+
+// locals
+import { HierarchicalTrackSelectorModel } from '../model'
+
+const useStyles = makeStyles()(theme => ({
+  fab: {
+    position: 'absolute',
+    bottom: theme.spacing(6),
+    right: theme.spacing(6),
+  },
+}))
+
+export default observer(function HierarchicalFab({
+  model,
+}: {
+  model: HierarchicalTrackSelectorModel
+}) {
+  const { classes } = useStyles()
+  const session = getSession(model)
+  const [anchorEl, setAnchorEl] = useState<HTMLButtonElement | null>(null)
+
+  function handleFabClose() {
+    setAnchorEl(null)
+  }
+  const hasConnections = isSessionModelWithConnections(session)
+  const hasAddTrack = isSessionWithAddTracks(session)
+  return (
+    <>
+      {hasAddTrack || hasConnections ? (
+        <>
+          <Fab
+            color="secondary"
+            className={classes.fab}
+            onClick={event => setAnchorEl(event.currentTarget)}
+          >
+            <AddIcon />
+          </Fab>
+          <Menu
+            anchorEl={anchorEl}
+            open={Boolean(anchorEl)}
+            onClose={() => setAnchorEl(null)}
+          >
+            {hasConnections ? (
+              <MenuItem
+                onClick={() => {
+                  handleFabClose()
+                  if (isSessionModelWithWidgets(session)) {
+                    session.showWidget(
+                      session.addWidget(
+                        'AddConnectionWidget',
+                        'addConnectionWidget',
+                      ),
+                    )
+                  }
+                }}
+              >
+                Add connection
+              </MenuItem>
+            ) : null}
+            {hasAddTrack ? (
+              <MenuItem
+                onClick={() => {
+                  handleFabClose()
+                  if (isSessionModelWithWidgets(session)) {
+                    session.showWidget(
+                      session.addWidget('AddTrackWidget', 'addTrackWidget', {
+                        view: model.view.id,
+                      }),
+                    )
+                  }
+                }}
+              >
+                Add track
+              </MenuItem>
+            ) : null}
+          </Menu>
+        </>
+      ) : null}
+    </>
+  )
+})