@jbrowse/plugin-data-management 2.3.3 → 2.3.4

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -44,15 +44,12 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         backgroundColor: theme.palette.background.default,
     },
     button: {
-        marginTop: theme.spacing(1),
         marginRight: theme.spacing(1),
     },
     actionsContainer: {
+        marginTop: theme.spacing(10),
         marginBottom: theme.spacing(2),
     },
-    stepContent: {
-        margin: theme.spacing(1),
-    },
     alertContainer: {
         padding: `${theme.spacing(2)}px 0px ${theme.spacing(2)}px 0px`,
     },

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

@@ -1 +1 @@
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+{"version":3,"file":"DefaultAddTrackWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAQsB;AACtB,uCAA0C;AAC1C,qDAAyC;AAEzC,6CAI2B;AAC3B,+DAAqD;AACrD,2CAAqC;AAErC,SAAS;AACT,kEAAyC;AACzC,4EAAmD;AAGnD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;QAC5B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,cAAc,EAAE;QACd,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ;KAC/D;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,kBAAkB,EAAE,oBAAoB,CAAC,CAAA;AAExD,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,8DAA8D;IAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,yBAAO,EAAM,KAAK,CAAC,CAAA;IAC3C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EACJ,QAAQ,EACR,YAAY,EACZ,SAAS,EACT,SAAS,EACT,SAAS,EACT,cAAc,EACd,gBAAgB,GACjB,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,iBAAiB,EAAE,oBAAoB,CAAC,GAAG,IAAA,gBAAQ,GAAU,CAAA;IAEpE,SAAS,cAAc,CAAC,IAAY;QAClC,QAAQ,IAAI,EAAE;YACZ,KAAK,CAAC;gBACJ,OAAO,8BAAC,2BAAiB,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YAC5C,KAAK,CAAC;gBACJ,OAAO,8BAAC,sBAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YACvC;gBACE,OAAO,8BAAC,qBAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,KAAK,UAAU,UAAU;QACvB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;YAC7B,OAAM;SACP;QAED,MAAM,OAAO,GAAG;YACd,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;YAC7D,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,eAAe,EAAE;SAC9C,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;QAEV,MAAM,gBAAgB,GAAG,OAAO,CAAC,eAAe,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;QAE9D,IAAI,YAAY,IAAI,YAAY,CAAC,IAAI,KAAK,SAAS,EAAE;YACnD,OAAO,CAAC,YAAY,CAAC;gBACnB,OAAO;gBACP,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,SAAS;gBACf,aAAa,EAAE,CAAC,QAAQ,CAAC;gBACzB,OAAO,EAAE;oBACP,GAAG,YAAY;oBACf,eAAe,EAAE,IAAA,uBAAO,EAAC,gBAAgB,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;iBACpE;aACF,CAAC,CAAA;YACF,IAAI,KAAK,CAAC,IAAI,EAAE;gBACd,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;gBAC7B,IACE,iBAAU;oBACV,cAAc;oBACd,IAAA,gCAAyB,EAAC,YAAY,CAAC,IAAI,CAAC,EAC5C;oBACA,MAAM,IAAI,GAAG,gBAAgB,IAAI;wBAC/B,UAAU,EAAE,CAAC,MAAM,EAAE,IAAI,CAAC;wBAC1B,OAAO,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC;qBACzB,CAAA;oBACD,MAAM,SAAS,GAAG,SAAS,GAAG,QAAQ,CAAA;oBACtC,MAAM,QAAQ,GAAG;wBACf,cAAc,EAAE;4BACd,GAAG,IAAI;4BACP,UAAU,EAAE,CAAC,QAAQ,CAAC;4BACtB,MAAM,EAAE,CAAC,OAAO,CAAC;4BACjB,SAAS,EAAE,UAAU;4BACrB,IAAI,EAAE,SAAS;4BACf,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;yBACpC;wBACD,IAAI,EAAE,SAAS;wBACf,cAAc,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,QAAQ,EAAE;qBAC7C,CAAA;oBACD,WAAW,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAA;iBAC/B;aACF;iBAAM;gBACL,OAAO,CAAC,MAAM,CACZ,oFAAoF,EACpF,MAAM,CACP,CAAA;aACF;YACD,KAAK,CAAC,SAAS,EAAE,CAAA;YACjB,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;SAC1B;aAAM;YACL,oBAAoB,CAClB,kFAAkF,CACnF,CAAA;SACF;IACH,CAAC;IAED,SAAS,UAAU;QACjB,oBAAoB,CAAC,SAAS,CAAC,CAAA;QAC/B,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,cAAc;QACrB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CAAC,SAAS,CAAA;YACnB,KAAK,CAAC;gBACJ,OAAO,CAAC,CAAC,SAAS,IAAI,SAAS,KAAI,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,IAAI,CAAA,IAAI,QAAQ,CAAC,CAAA;YACpE;gBACE,OAAO,IAAI,CAAA;SACd;IACH,CAAC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CACzB,8BAAC,eAAI,IAAC,GAAG,EAAE,KAAK;YACd,8BAAC,oBAAS,QAAE,KAAK,CAAa;YAC9B,8BAAC,sBAAW;gBACT,cAAc,CAAC,GAAG,CAAC;gBACpB,uCAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,8BAAC,iBAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,8BAAC,iBAAM,IACL,QAAQ,EAAE,cAAc,EAAE,EAC1B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,oBAAoB,IAE/B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAC1C,CACL;gBACL,iBAAiB,CAAC,CAAC,CAAC,CACnB,uCAAK,SAAS,EAAE,OAAO,CAAC,cAAc;oBACpC,8BAAC,gBAAK,IAAC,QAAQ,EAAC,OAAO,IAAE,iBAAiB,CAAS,CAC/C,CACP,CAAC,CAAC,CAAC,IAAI,CACI,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AACD,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}

package/dist/AddTrackWidget/components/TrackSourceSelect.js

@@ -11,9 +11,7 @@ const mobx_state_tree_1 = require("mobx-state-tree");
 const mobx_react_1 = require("mobx-react");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     paper: {
-        display: 'flex',
-        flexDirection: 'column',
-        padding: theme.spacing(1),
+        padding: theme.spacing(2),
     },
     spacer: {
         height: theme.spacing(8),
@@ -21,7 +19,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 }));
 function TrackSourceSelect({ model }) {
     const { classes } = useStyles();
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const rootModel = (0, mobx_state_tree_1.getRoot)(model);
     return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
         react_1.default.createElement(ui_1.FileSelector, { name: "Main file", description: "", location: model.trackData, setLocation: model.setTrackData, setName: model.setTrackName, rootModel: rootModel }),

package/dist/AddTrackWidget/components/TrackSourceSelect.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackSourceSelect.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/TrackSourceSelect.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,yCAA+C;AAE/C,4CAAqC;AACrC,uCAA0C;AAC1C,qDAAyC;AACzC,2CAAqC;AAKrC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAA4B;IAC5D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,SAAS,GAAG,IAAA,yBAAO,EAAoB,KAAK,CAAC,CAAA;IAEnD,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,8BAAC,iBAAY,IACX,IAAI,EAAC,WAAW,EAChB,WAAW,EAAC,EAAE,EACd,QAAQ,EAAE,KAAK,CAAC,SAAS,EACzB,WAAW,EAAE,KAAK,CAAC,YAAY,EAC/B,OAAO,EAAE,KAAK,CAAC,YAAY,EAC3B,SAAS,EAAE,SAAS,GACpB;QACF,uCAAK,SAAS,EAAE,OAAO,CAAC,MAAM,GAAI;QAClC,8BAAC,iBAAY,IACX,IAAI,EAAC,YAAY,EACjB,WAAW,EAAC,qHAAqH,EACjI,QAAQ,EAAE,KAAK,CAAC,cAAc,EAC9B,WAAW,EAAE,KAAK,CAAC,iBAAiB,EACpC,OAAO,EAAE,KAAK,CAAC,YAAY,EAC3B,SAAS,EAAE,SAAS,GACpB,CACI,CACT,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,iBAAiB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel } from '../model';
+declare const _default: ({ model, }: {
+    model: HierarchicalTrackSelectorModel;
+}) => JSX.Element;
+export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js

@@ -0,0 +1,71 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const util_1 = require("@jbrowse/core/util");
+const mobx_react_1 = require("mobx-react");
+// icons
+const Add_1 = __importDefault(require("@mui/icons-material/Add"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    fab: {
+        position: 'absolute',
+        bottom: theme.spacing(6),
+        right: theme.spacing(6),
+    },
+}));
+exports.default = (0, mobx_react_1.observer)(function HierarchicalFab({ model, }) {
+    const { classes } = useStyles();
+    const session = (0, util_1.getSession)(model);
+    const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
+    function handleFabClose() {
+        setAnchorEl(null);
+    }
+    const hasConnections = (0, util_1.isSessionModelWithConnections)(session);
+    const hasAddTrack = (0, util_1.isSessionWithAddTracks)(session);
+    return (react_1.default.createElement(react_1.default.Fragment, null, hasAddTrack || hasConnections ? (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.Fab, { color: "secondary", className: classes.fab, onClick: event => setAnchorEl(event.currentTarget) },
+            react_1.default.createElement(Add_1.default, null)),
+        react_1.default.createElement(material_1.Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onClose: () => setAnchorEl(null) },
+            hasConnections ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
+                    handleFabClose();
+                    if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                        session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
+                    }
+                } }, "Add connection")) : null,
+            hasAddTrack ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
+                    handleFabClose();
+                    if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                        session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
+                            view: model.view.id,
+                        }));
+                    }
+                } }, "Add track")) : null))) : null));
+});
+//# sourceMappingURL=HierarchicalFab.js.map

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"HierarchicalFab.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/HierarchicalFab.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAAmD;AACnD,uCAA0C;AAC1C,6CAK2B;AAC3B,2CAAqC;AAErC,QAAQ;AACR,kEAA6C;AAK7C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,GAAG,EAAE;QACH,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,kBAAe,IAAA,qBAAQ,EAAC,SAAS,eAAe,CAAC,EAC/C,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAA2B,IAAI,CAAC,CAAA;IAExE,SAAS,cAAc;QACrB,WAAW,CAAC,IAAI,CAAC,CAAA;IACnB,CAAC;IACD,MAAM,cAAc,GAAG,IAAA,oCAA6B,EAAC,OAAO,CAAC,CAAA;IAC7D,MAAM,WAAW,GAAG,IAAA,6BAAsB,EAAC,OAAO,CAAC,CAAA;IACnD,OAAO,CACL,8DACG,WAAW,IAAI,cAAc,CAAC,CAAC,CAAC,CAC/B;QACE,8BAAC,cAAG,IACF,KAAK,EAAC,WAAW,EACjB,SAAS,EAAE,OAAO,CAAC,GAAG,EACtB,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC;YAElD,8BAAC,aAAO,OAAG,CACP;QACN,8BAAC,eAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,OAAO,CAAC,QAAQ,CAAC,EACvB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC;YAE/B,cAAc,CAAC,CAAC,CAAC,CAChB,8BAAC,mBAAQ,IACP,OAAO,EAAE,GAAG,EAAE;oBACZ,cAAc,EAAE,CAAA;oBAChB,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;wBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CACf,qBAAqB,EACrB,qBAAqB,CACtB,CACF,CAAA;qBACF;gBACH,CAAC,qBAGQ,CACZ,CAAC,CAAC,CAAC,IAAI;YACP,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,mBAAQ,IACP,OAAO,EAAE,GAAG,EAAE;oBACZ,cAAc,EAAE,CAAA;oBAChB,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;wBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;4BACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;yBACpB,CAAC,CACH,CAAA;qBACF;gBACH,CAAC,gBAGQ,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACN,CACJ,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -27,127 +27,33 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const util_1 = require("@jbrowse/core/util");
 const mobx_react_1 = require("mobx-react");
-const react_vtree_1 = require("react-vtree");
 const react_virtualized_auto_sizer_1 = __importDefault(require("react-virtualized-auto-sizer"));
-// icons
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const Header_1 = __importDefault(require("./Header"));
-const Node_1 = __importDefault(require("./Node"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    fab: {
-        position: 'absolute',
-        bottom: theme.spacing(6),
-        right: theme.spacing(6),
-    },
-}));
-function getNodeData(node, nestingLevel, extra, selection) {
-    const isLeaf = !!node.conf;
-    const selected = !!selection[node.id];
-    return {
-        data: {
-            defaultHeight: isLeaf ? 22 : 40,
-            isLeaf,
-            isOpenByDefault: true,
-            nestingLevel,
-            selected,
-            ...node,
-            ...extra,
-        },
-        nestingLevel,
-        node,
-    };
-}
-// this is the main tree component for the hierarchical track selector in note:
-// in jbrowse-web the toolbar is position="sticky" which means the autosizer
-// includes the height of the toolbar, so we subtract the given offsets
-const HierarchicalTree = (0, mobx_react_1.observer)(({ height, tree, model, }) => {
-    const { filterText, selection, view } = model;
-    const treeRef = (0, react_1.useRef)(null);
-    const session = (0, util_1.getSession)(model);
-    const { drawerPosition } = session;
-    const obj = (0, react_1.useMemo)(() => Object.fromEntries(selection.map(s => [s.trackId, s])), [selection]);
-    const extra = (0, react_1.useMemo)(() => ({
-        onChange: (trackId) => view.toggleTrack(trackId),
-        toggleCollapse: (pathName) => model.toggleCategory(pathName),
-        tree,
-        model,
-        drawerPosition,
-    }), [view, model, drawerPosition, tree]);
-    const treeWalker = (0, react_1.useCallback)(function* treeWalker() {
-        for (let i = 0; i < tree.children.length; i++) {
-            const r = tree.children[i];
-            yield getNodeData(r, 0, extra, obj);
-        }
-        while (true) {
-            // @ts-ignore
-            const parentMeta = yield;
-            for (let i = 0; i < parentMeta.node.children.length; i++) {
-                const curr = parentMeta.node.children[i];
-                yield getNodeData(curr, parentMeta.nestingLevel + 1, extra, obj);
-            }
-        }
-    }, [tree, extra, obj]);
-    (0, react_1.useEffect)(() => {
-        // @ts-ignore
-        treeRef.current.recomputeTree({
-            refreshNodes: true,
-            useDefaultHeight: true,
-        });
-    }, [tree, filterText]);
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(react_vtree_1.VariableSizeTree, { ref: treeRef, treeWalker: treeWalker, height: height }, Node_1.default)));
-});
+const HierarchicalFab_1 = __importDefault(require("./HierarchicalFab"));
+const HierarchicalTree_1 = __importDefault(require("./tree/HierarchicalTree"));
+const HierarchicalHeader_1 = __importDefault(require("./tree/HierarchicalHeader"));
 // Don't use autosizer in jest and instead hardcode a height, otherwise fails
 // jest tests
 const AutoSizedHierarchicalTree = ({ tree, model, offset, }) => {
     return typeof jest === 'undefined' ? (react_1.default.createElement(react_virtualized_auto_sizer_1.default, { disableWidth: true }, ({ height }) => {
-        return (react_1.default.createElement(HierarchicalTree, { height: height - offset, model: model, tree: tree }));
-    })) : (react_1.default.createElement(HierarchicalTree, { height: 9000, model: model, tree: tree }));
+        return (react_1.default.createElement(HierarchicalTree_1.default, { height: height - offset, model: model, tree: tree }));
+    })) : (react_1.default.createElement(HierarchicalTree_1.default, { height: 9000, model: model, tree: tree }));
 };
 const Wrapper = ({ overrideDimensions, children, }) => {
     return overrideDimensions ? (react_1.default.createElement("div", { style: { ...overrideDimensions } }, children)) : (react_1.default.createElement(react_1.default.Fragment, null, children));
 };
-const HierarchicalTrackSelectorContainer = (0, mobx_react_1.observer)(({ model, toolbarHeight, overrideDimensions, }) => {
-    const { classes } = useStyles();
-    const session = (0, util_1.getSession)(model);
-    const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
-    function handleFabClose() {
-        setAnchorEl(null);
-    }
-    const hasConnections = (0, util_1.isSessionModelWithConnections)(session);
-    const hasAddTrack = (0, util_1.isSessionWithAddTracks)(session);
+const HierarchicalTrackSelectorContainer = (0, mobx_react_1.observer)(function ({ model, toolbarHeight, overrideDimensions, }) {
     return (react_1.default.createElement(Wrapper, { overrideDimensions: overrideDimensions },
         react_1.default.createElement(HierarchicalTrackSelector, { model: model, toolbarHeight: toolbarHeight }),
-        hasAddTrack || hasConnections ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Fab, { color: "secondary", className: classes.fab, onClick: event => setAnchorEl(event.currentTarget) },
-                react_1.default.createElement(Add_1.default, null)),
-            react_1.default.createElement(material_1.Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onClose: () => setAnchorEl(null) },
-                hasConnections ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
-                        handleFabClose();
-                        if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                            session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
-                        }
-                    } }, "Add connection")) : null,
-                hasAddTrack ? (react_1.default.createElement(material_1.MenuItem, { onClick: () => {
-                        handleFabClose();
-                        if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                            session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
-                                view: model.view.id,
-                            }));
-                        }
-                    } }, "Add track")) : null))) : null));
+        react_1.default.createElement(HierarchicalFab_1.default, { model: model })));
 });
-const HierarchicalTrackSelector = (0, mobx_react_1.observer)(({ model, toolbarHeight = 0, }) => {
+const HierarchicalTrackSelector = (0, mobx_react_1.observer)(function ({ model, toolbarHeight = 0, }) {
     const [assemblyIdx, setAssemblyIdx] = (0, react_1.useState)(0);
     const [headerHeight, setHeaderHeight] = (0, react_1.useState)(0);
     const { assemblyNames } = model;
-    const assemblyName = assemblyNames.length ? assemblyNames[assemblyIdx] : '';
+    const assemblyName = assemblyNames[assemblyIdx];
     return assemblyName ? (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(Header_1.default, { model: model, setHeaderHeight: setHeaderHeight, setAssemblyIdx: setAssemblyIdx, assemblyIdx: assemblyIdx }),
+        react_1.default.createElement(HierarchicalHeader_1.default, { model: model, setHeaderHeight: setHeaderHeight, setAssemblyIdx: setAssemblyIdx }),
         react_1.default.createElement(AutoSizedHierarchicalTree, { tree: model.hierarchy(assemblyName), model: model, offset: toolbarHeight + headerHeight }))) : null;
 });
 exports.default = HierarchicalTrackSelectorContainer;

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel } from '../model';
+declare const _default: ({ model, }: {
+    model: HierarchicalTrackSelectorModel;
+}) => JSX.Element;
+export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js

@@ -0,0 +1,70 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
+const util_1 = require("@jbrowse/core/util");
+// icons
+const ShoppingCart_1 = __importDefault(require("@mui/icons-material/ShoppingCart"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    searchBox: {
+        margin: theme.spacing(2),
+    },
+    menuIcon: {
+        marginRight: theme.spacing(1),
+        marginBottom: 0,
+    },
+}));
+exports.default = (0, mobx_react_1.observer)(function ShoppingCart({ model, }) {
+    const { classes } = useStyles();
+    const { selection } = model;
+    const { pluginManager } = (0, util_1.getEnv)(model);
+    const session = (0, util_1.getSession)(model);
+    const [selectionEl, setSelectionEl] = (0, react_1.useState)();
+    const items = pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems', [], { session });
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        selection.length ? (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setSelectionEl(event.currentTarget) },
+            react_1.default.createElement(material_1.Badge, { badgeContent: selection.length, color: "primary" },
+                react_1.default.createElement(ShoppingCart_1.default, null)))) : null,
+        react_1.default.createElement(Menu_1.default, { anchorEl: selectionEl, open: Boolean(selectionEl), onMenuItemClick: (_, callback) => {
+                callback();
+                setSelectionEl(undefined);
+            }, onClose: () => setSelectionEl(undefined), menuItems: [
+                { label: 'Clear', onClick: () => model.clearSelection() },
+                ...items.map(item => ({
+                    ...item,
+                    ...('onClick' in item
+                        ? { onClick: () => item.onClick(model) }
+                        : {}),
+                })),
+            ] })));
+});
+//# sourceMappingURL=ShoppingCart.js.map

package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js.map

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package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts

@@ -0,0 +1,13 @@
+/// <reference types="react" />
+export default function FacetFilters({ rows, columns, dispatch, filters, width, }: {
+    rows: Record<string, unknown>[];
+    filters: Record<string, string[]>;
+    columns: {
+        field: string;
+    }[];
+    dispatch: (arg: {
+        key: string;
+        val: string[];
+    }) => void;
+    width: number;
+}): JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js

@@ -0,0 +1,99 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+// icon
+const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
+const Minimize_1 = __importDefault(require("@mui/icons-material/Minimize"));
+const Add_1 = __importDefault(require("@mui/icons-material/Add"));
+const useStyles = (0, mui_1.makeStyles)()(theme => ({
+    facet: {
+        margin: 0,
+        marginLeft: theme.spacing(2),
+    },
+    select: {
+        marginBottom: theme.spacing(2),
+    },
+}));
+function FacetFilter({ column, vals, width, dispatch, filters, }) {
+    const { classes } = useStyles();
+    const [visible, setVisible] = (0, react_1.useState)(true);
+    return (react_1.default.createElement(material_1.FormControl, { key: column.field, className: classes.facet, style: { width } },
+        react_1.default.createElement("div", { style: { display: 'flex' } },
+            react_1.default.createElement(material_1.Typography, null, column.field),
+            react_1.default.createElement(material_1.Tooltip, { title: "Clear selection on this facet filter" },
+                react_1.default.createElement(material_1.IconButton, { onClick: () => {
+                        dispatch({ key: column.field, val: [] });
+                    }, size: "small" },
+                    react_1.default.createElement(Clear_1.default, null))),
+            react_1.default.createElement(material_1.Tooltip, { title: "Minimize/expand this facet filter" },
+                react_1.default.createElement(material_1.IconButton, { onClick: () => setVisible(!visible), size: "small" }, visible ? react_1.default.createElement(Minimize_1.default, null) : react_1.default.createElement(Add_1.default, null)))),
+        visible ? (react_1.default.createElement(material_1.Select, { multiple: true, native: true, className: classes.select, value: filters[column.field], onChange: event => {
+                // @ts-ignore
+                const { options } = event.target;
+                const val = [];
+                const len = options.length;
+                for (let i = 0; i < len; i++) {
+                    if (options[i].selected) {
+                        val.push(options[i].value);
+                    }
+                }
+                dispatch({ key: column.field, val });
+            } }, vals
+            .sort((a, b) => a[0].localeCompare(b[0]))
+            .map(([name, count]) => (react_1.default.createElement("option", { key: name, value: name },
+            name,
+            " (",
+            count,
+            ")"))))) : null));
+}
+function FacetFilters({ rows, columns, dispatch, filters, width, }) {
+    const facets = columns.slice(1);
+    const uniqs = facets.map(() => new Map());
+    rows.forEach(row => {
+        facets.forEach((column, index) => {
+            const elt = uniqs[index];
+            const key = `${row[column.field] || ''}`;
+            const val = elt.get(key);
+            // we don't allow filtering on empty yet
+            if (key) {
+                if (val !== undefined) {
+                    elt.set(key, val + 1);
+                }
+                else {
+                    elt.set(key, 1);
+                }
+            }
+        });
+    });
+    return (react_1.default.createElement("div", null, facets.map((column, index) => (react_1.default.createElement(FacetFilter, { key: column.field, vals: Array.from(uniqs[index]), column: column, width: width, dispatch: dispatch, filters: filters })))));
+}
+exports.default = FacetFilters;
+//# sourceMappingURL=FacetFilters.js.map

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map

@@ -0,0 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts

@@ -0,0 +1,8 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel } from '../../model';
+declare function FacetedDlg(props: {
+    handleClose: () => void;
+    model: HierarchicalTrackSelectorModel;
+}): JSX.Element;
+declare const _default: typeof FacetedDlg;
+export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js

@@ -0,0 +1,18 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
+const mobx_react_1 = require("mobx-react");
+const FacetedSelector_1 = __importDefault(require("./FacetedSelector"));
+function FacetedDlg(props) {
+    const { handleClose } = props;
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "xl", title: "Faceted track selector" },
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(FacetedSelector_1.default, { ...props }))));
+}
+exports.default = (0, mobx_react_1.observer)(FacetedDlg);
+//# sourceMappingURL=FacetedDialog.js.map

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"FacetedDialog.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAA6C;AAC7C,yCAAyC;AACzC,2CAAqC;AAIrC,wEAA+C;AAE/C,SAAS,UAAU,CAAC,KAGnB;IACC,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,wBAAwB;QAE9B,8BAAC,wBAAa;YACZ,8BAAC,yBAAe,OAAK,KAAK,GAAI,CAChB,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts

@@ -0,0 +1,11 @@
+/// <reference types="react" />
+import { HierarchicalTrackSelectorModel } from '../../model';
+export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideSparse, useShoppingCart, filterText, model, }: {
+    setFilterText: (arg: string) => void;
+    setUseShoppingCart: (arg: boolean) => void;
+    setHideSparse: (arg: boolean) => void;
+    filterText: string;
+    useShoppingCart: boolean;
+    hideSparse: boolean;
+    model: HierarchicalTrackSelectorModel;
+}): JSX.Element;