@jbrowse/plugin-data-management 2.3.1 → 2.3.3

package/dist/ucsc-trackhub/ucscTrackHub.js

@@ -26,15 +26,15 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.generateTracks = exports.fetchTrackDbFile = exports.fetchGenomesFile = exports.fetchHubFile = exports.ucscAssemblies = void 0;
+exports.generateTracks = exports.makeLoc2 = exports.makeLocAlt = exports.makeLoc = exports.fetchTrackDbFile = exports.fetchGenomesFile = exports.fetchHubFile = exports.ucscAssemblies = void 0;
 const util_1 = require("@jbrowse/core/util");
 const io_1 = require("@jbrowse/core/util/io");
 const tracks_1 = require("@jbrowse/core/util/tracks");
 const ucscAssemblies_1 = __importDefault(require("./ucscAssemblies"));
 exports.ucscAssemblies = ucscAssemblies_1.default;
-async function fetchHubFile(hubFileLocation) {
+async function fetchHubFile(hubLocation) {
     try {
-        const hubFileText = await (0, io_1.openLocation)(hubFileLocation).readFile('utf8');
+        const hubFileText = await (0, io_1.openLocation)(hubLocation).readFile('utf8');
         const { HubFile } = await Promise.resolve().then(() => __importStar(require('@gmod/ucsc-hub')));
         return new HubFile(hubFileText);
     }
@@ -43,21 +43,45 @@ async function fetchHubFile(hubFileLocation) {
     }
 }
 exports.fetchHubFile = fetchHubFile;
-async function fetchGenomesFile(genomesFileLocation) {
-    const genomesFileText = await (0, io_1.openLocation)(genomesFileLocation).readFile('utf8');
+async function fetchGenomesFile(genomesLoc) {
+    const genomesFileText = await (0, io_1.openLocation)(genomesLoc).readFile('utf8');
     const { GenomesFile } = await Promise.resolve().then(() => __importStar(require('@gmod/ucsc-hub')));
     return new GenomesFile(genomesFileText);
 }
 exports.fetchGenomesFile = fetchGenomesFile;
-async function fetchTrackDbFile(trackDbFileLocation) {
-    const text = await (0, io_1.openLocation)(trackDbFileLocation).readFile('utf8');
+async function fetchTrackDbFile(trackDbLoc) {
+    const text = await (0, io_1.openLocation)(trackDbLoc).readFile('utf8');
     const { TrackDbFile } = await Promise.resolve().then(() => __importStar(require('@gmod/ucsc-hub')));
     return new TrackDbFile(text);
 }
 exports.fetchTrackDbFile = fetchTrackDbFile;
-function generateTracks(trackDb, trackDbFileLocation, assemblyName, sequenceAdapter) {
+function makeLoc(first, base) {
+    return {
+        uri: new URL(first, base.uri).href,
+        locationType: 'UriLocation',
+    };
+}
+exports.makeLoc = makeLoc;
+function makeLocAlt(first, alt, base) {
+    return first ? makeLoc(first, base) : makeLoc(alt, base);
+}
+exports.makeLocAlt = makeLocAlt;
+function makeLoc2(first, alt) {
+    return first
+        ? {
+            uri: first,
+            locationType: 'LocalPath',
+        }
+        : {
+            uri: alt,
+            locationType: 'UriLocation',
+        };
+}
+exports.makeLoc2 = makeLoc2;
+function generateTracks(trackDb, trackDbLoc, assemblyName, sequenceAdapter) {
     const tracks = [];
     trackDb.forEach((track, trackName) => {
+        var _a;
         const trackKeys = Array.from(track.keys());
         const parentTrackKeys = [
             'superTrack',
@@ -71,7 +95,7 @@ function generateTracks(trackDb, trackDbFileLocation, assemblyName, sequenceAdap
         const parentTracks = [];
         let currentTrackName = trackName;
         do {
-            currentTrackName = trackDb.get(currentTrackName).get('parent');
+            currentTrackName = ((_a = trackDb.get(currentTrackName)) === null || _a === void 0 ? void 0 : _a.get('parent')) || '';
             if (currentTrackName) {
                 ;
                 [currentTrackName] = currentTrackName.split(' ');
@@ -79,64 +103,38 @@ function generateTracks(trackDb, trackDbFileLocation, assemblyName, sequenceAdap
             }
         } while (currentTrackName);
         parentTracks.reverse();
-        const categories = parentTracks.map(parentTrack => parentTrack.get('shortLabel'));
-        const res = makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequenceAdapter);
-        res.trackId = `ucsc-trackhub-${(0, util_1.objectHash)(res)}`;
-        res.assemblyNames = [assemblyName];
-        tracks.push(res);
+        const categories = parentTracks
+            .map(p => p === null || p === void 0 ? void 0 : p.get('shortLabel'))
+            .filter((f) => !!f);
+        const res = makeTrackConfig(track, categories, trackDbLoc, trackDb, sequenceAdapter);
+        tracks.push({
+            ...res,
+            trackId: `ucsc-trackhub-${(0, util_1.objectHash)(res)}`,
+            assemblyNames: [assemblyName],
+        });
     });
     return tracks;
 }
 exports.generateTracks = generateTracks;
-function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequenceAdapter) {
+function makeTrackConfig(track, categories, trackDbLoc, trackDb, sequenceAdapter) {
+    var _a;
     let trackType = track.get('type');
+    const name = track.get('shortLabel') || '';
+    const bigDataUrl = track.get('bigDataUrl') || '';
+    const bigDataIdx = track.get('bigDataIndex') || '';
+    const isUri = (0, util_1.isUriLocation)(trackDbLoc);
     if (!trackType) {
-        trackType = trackDb.get(track.get('parent')).get('type');
+        trackType = (_a = trackDb.get(track.get('parent') || '')) === null || _a === void 0 ? void 0 : _a.get('type');
     }
-    let baseTrackType = trackType.split(' ')[0];
-    if (baseTrackType === 'bam' &&
-        track.get('bigDataUrl').toLowerCase().endsWith('cram')) {
+    let baseTrackType = (trackType === null || trackType === void 0 ? void 0 : trackType.split(' ')[0]) || '';
+    if (baseTrackType === 'bam' && bigDataUrl.toLowerCase().endsWith('cram')) {
         baseTrackType = 'cram';
     }
-    let bigDataLocation;
-    if (trackDbFileLocation.uri) {
-        bigDataLocation = {
-            uri: new URL(track.get('bigDataUrl'), trackDbFileLocation.uri).href,
-            locationType: 'UriLocation',
-        };
-    }
-    else {
-        bigDataLocation = {
-            localPath: track.get('bigDataUrl'),
-            locationType: 'LocalPathLocation',
-        };
-    }
-    let bigDataIndexLocation;
+    const bigDataLocation = isUri
+        ? makeLoc(bigDataUrl, trackDbLoc)
+        : makeLoc2(bigDataUrl);
     switch (baseTrackType) {
         case 'bam':
-            if (trackDbFileLocation.uri) {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        uri: new URL(track.get('bigDataIndex'), trackDbFileLocation.uri)
-                            .href,
-                        locationType: 'UriLocation',
-                    }
-                    : {
-                        uri: new URL(`${track.get('bigDataUrl')}.bai`, trackDbFileLocation.uri).href,
-                        locationType: 'UriLocation',
-                    };
-            }
-            else {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        localPath: track.get('bigDataIndex'),
-                        locationType: 'LocalPathLocation',
-                    }
-                    : {
-                        localPath: `${track.get('bigDataUrl')}.bai`,
-                        locationType: 'LocalPathLocation',
-                    };
-            }
             return {
                 type: 'AlignmentsTrack',
                 name: track.get('shortLabel'),
@@ -146,22 +144,16 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
                     type: 'BamAdapter',
                     bamLocation: bigDataLocation,
                     index: {
-                        location: bigDataIndexLocation,
+                        location: isUri
+                            ? makeLocAlt(bigDataIdx, bigDataUrl + '.bai', trackDbLoc)
+                            : makeLoc2(bigDataIdx, bigDataUrl + '.bai'),
                     },
                 },
             };
-        case 'bed':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'bed5FloatScore':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'bedGraph':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'bedRnaElements':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
         case 'bigBarChart':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -175,7 +167,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigBed':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -186,7 +178,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigGenePred':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -197,7 +189,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigChain':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -211,7 +203,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigInteract':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -225,7 +217,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigMaf':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -239,7 +231,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigPsl':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -253,7 +245,7 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
         case 'bigWig':
             return {
                 type: 'QuantitativeTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -261,56 +253,25 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
                     bigWigLocation: bigDataLocation,
                 },
             };
-        case 'broadPeak':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'coloredExon':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
         case 'cram':
-            if (trackDbFileLocation.uri) {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        uri: new URL(track.get('bigDataIndex'), trackDbFileLocation.uri)
-                            .href,
-                        locationType: 'UriLocation',
-                    }
-                    : {
-                        uri: new URL(`${track.get('bigDataUrl')}.crai`, trackDbFileLocation.uri).href,
-                        locationType: 'UriLocation',
-                    };
-            }
-            else {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        localPath: track.get('bigDataIndex'),
-                        locationType: 'LocalPathLocation',
-                    }
-                    : {
-                        localPath: `${track.get('bigDataUrl')}.crai`,
-                        locationType: 'LocalPathLocation',
-                    };
-            }
             return {
                 type: 'AlignmentsTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
                     type: 'CramAdapter',
                     cramLocation: bigDataLocation,
-                    craiLocation: bigDataIndexLocation,
+                    craiLocation: isUri
+                        ? makeLocAlt(bigDataIdx, bigDataUrl + '.crai', trackDbLoc)
+                        : makeLoc2(bigDataIdx, bigDataUrl + '.crai'),
                     sequenceAdapter,
                 },
             };
-        case 'gvf':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'ld2':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'narrowPeak':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
         case 'bigNarrowPeak':
             return {
                 type: 'FeatureTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -319,52 +280,27 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
                 },
             };
         case 'peptideMapping':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
+            return (0, tracks_1.generateUnsupportedTrackConf)(name, baseTrackType, categories);
         case 'vcfTabix':
-            if (trackDbFileLocation.uri) {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        uri: new URL(track.get('bigDataIndex'), trackDbFileLocation.uri)
-                            .href,
-                        locationType: 'UriLocation',
-                    }
-                    : {
-                        uri: new URL(`${track.get('bigDataUrl')}.tbi`, trackDbFileLocation.uri).href,
-                        locationType: 'UriLocation',
-                    };
-            }
-            else {
-                bigDataIndexLocation = track.get('bigDataIndex')
-                    ? {
-                        localPath: track.get('bigDataIndex'),
-                        locationType: 'LocalPathLocation',
-                    }
-                    : {
-                        localPath: `${track.get('bigDataUrl')}.tbi`,
-                        locationType: 'LocalPathLocation',
-                    };
-            }
             return {
                 type: 'VariantTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
                     type: 'VcfTabixAdapter',
                     vcfGzLocation: bigDataLocation,
                     index: {
-                        location: bigDataIndexLocation,
+                        location: isUri
+                            ? makeLocAlt(bigDataIdx, bigDataUrl + '.tbi', trackDbLoc)
+                            : makeLoc2(bigDataIdx, bigDataUrl + '.tbi'),
                     },
                 },
             };
-        case 'wig':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
-        case 'wigMaf':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
         case 'hic':
             return {
                 type: 'HicTrack',
-                name: track.get('shortLabel'),
+                name,
                 description: track.get('longLabel'),
                 category: categories,
                 adapter: {
@@ -372,10 +308,21 @@ function makeTrackConfig(track, categories, trackDbFileLocation, trackDb, sequen
                     hicLocation: bigDataLocation,
                 },
             };
-        case 'halSnake':
-            return (0, tracks_1.generateUnsupportedTrackConf)(track.get('shortLabel'), baseTrackType, categories);
+        // unsupported types
+        //     case 'gvf':
+        //     case 'ld2':
+        //     case 'narrowPeak':
+        //     case 'wig':
+        //     case 'wigMaf':
+        //     case 'halSnake':
+        //     case 'bed':
+        //     case 'bed5FloatScore':
+        //     case 'bedGraph':
+        //     case 'bedRnaElements':
+        //     case 'broadPeak':
+        //     case 'coloredExon':
         default:
-            return (0, tracks_1.generateUnknownTrackConf)(track.get('shortLabel'), baseTrackType, categories);
+            return (0, tracks_1.generateUnknownTrackConf)(name, baseTrackType, categories);
     }
 }
 //# sourceMappingURL=ucscTrackHub.js.map

package/dist/ucsc-trackhub/ucscTrackHub.js.map

@@ -1 +1 @@
-{"version":3,"file":"ucscTrackHub.js","sourceRoot":"","sources":["../../src/ucsc-trackhub/ucscTrackHub.js"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAA+C;AAC/C,8CAAoD;AACpD,sDAGkC;AAClC,sEAA6C;AAEpC,yBAFF,wBAAc,CAEE;AAEhB,KAAK,UAAU,YAAY,CAAC,eAAe;IAChD,IAAI;QACF,MAAM,WAAW,GAAG,MAAM,IAAA,iBAAY,EAAC,eAAe,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QACxE,MAAM,EAAE,OAAO,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;QAClD,OAAO,IAAI,OAAO,CAAC,WAAW,CAAC,CAAA;KAChC;IAAC,OAAO,KAAK,EAAE;QACd,MAAM,IAAI,KAAK,CAAC,yCAAyC,KAAK,GAAG,CAAC,CAAA;KACnE;AACH,CAAC;AARD,oCAQC;AAEM,KAAK,UAAU,gBAAgB,CAAC,mBAAmB;IACxD,MAAM,eAAe,GAAG,MAAM,IAAA,iBAAY,EAAC,mBAAmB,CAAC,CAAC,QAAQ,CACtE,MAAM,CACP,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;IACtD,OAAO,IAAI,WAAW,CAAC,eAAe,CAAC,CAAA;AACzC,CAAC;AAND,4CAMC;AAEM,KAAK,UAAU,gBAAgB,CAAC,mBAAmB;IACxD,MAAM,IAAI,GAAG,MAAM,IAAA,iBAAY,EAAC,mBAAmB,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;IACrE,MAAM,EAAE,WAAW,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;IACtD,OAAO,IAAI,WAAW,CAAC,IAAI,CAAC,CAAA;AAC9B,CAAC;AAJD,4CAIC;AAED,SAAgB,cAAc,CAC5B,OAAO,EACP,mBAAmB,EACnB,YAAY,EACZ,eAAe;IAEf,MAAM,MAAM,GAAG,EAAE,CAAA;IAEjB,OAAO,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,SAAS,EAAE,EAAE;QACnC,MAAM,SAAS,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAA;QAC1C,MAAM,eAAe,GAAG;YACtB,YAAY;YACZ,gBAAgB;YAChB,WAAW;YACX,MAAM;SACP,CAAA;QACD,IAAI,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,eAAe,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE;YACxD,OAAM;SACP;QACD,MAAM,YAAY,GAAG,EAAE,CAAA;QACvB,IAAI,gBAAgB,GAAG,SAAS,CAAA;QAChC,GAAG;YACD,gBAAgB,GAAG,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;YAC9D,IAAI,gBAAgB,EAAE;gBACpB,CAAC;gBAAA,CAAC,gBAAgB,CAAC,GAAG,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBACjD,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC,CAAA;aACjD;SACF,QAAQ,gBAAgB,EAAC;QAC1B,YAAY,CAAC,OAAO,EAAE,CAAA;QACtB,MAAM,UAAU,GAAG,YAAY,CAAC,GAAG,CAAC,WAAW,CAAC,EAAE,CAChD,WAAW,CAAC,GAAG,CAAC,YAAY,CAAC,CAC9B,CAAA;QACD,MAAM,GAAG,GAAG,eAAe,CACzB,KAAK,EACL,UAAU,EACV,mBAAmB,EACnB,OAAO,EACP,eAAe,CAChB,CAAA;QACD,GAAG,CAAC,OAAO,GAAG,iBAAiB,IAAA,iBAAU,EAAC,GAAG,CAAC,EAAE,CAAA;QAChD,GAAG,CAAC,aAAa,GAAG,CAAC,YAAY,CAAC,CAAA;QAClC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IAClB,CAAC,CAAC,CAAA;IAEF,OAAO,MAAM,CAAA;AACf,CAAC;AA7CD,wCA6CC;AAED,SAAS,eAAe,CACtB,KAAK,EACL,UAAU,EACV,mBAAmB,EACnB,OAAO,EACP,eAAe;IAEf,IAAI,SAAS,GAAG,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IACjC,IAAI,CAAC,SAAS,EAAE;QACd,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;KACzD;IACD,IAAI,aAAa,GAAG,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;IAC3C,IACE,aAAa,KAAK,KAAK;QACvB,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,EACtD;QACA,aAAa,GAAG,MAAM,CAAA;KACvB;IACD,IAAI,eAAe,CAAA;IACnB,IAAI,mBAAmB,CAAC,GAAG,EAAE;QAC3B,eAAe,GAAG;YAChB,GAAG,EAAE,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,mBAAmB,CAAC,GAAG,CAAC,CAAC,IAAI;YACnE,YAAY,EAAE,aAAa;SAC5B,CAAA;KACF;SAAM;QACL,eAAe,GAAG;YAChB,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;YAClC,YAAY,EAAE,mBAAmB;SAClC,CAAA;KACF;IACD,IAAI,oBAAoB,CAAA;IAExB,QAAQ,aAAa,EAAE;QACrB,KAAK,KAAK;YACR,IAAI,mBAAmB,CAAC,GAAG,EAAE;gBAC3B,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,mBAAmB,CAAC,GAAG,CAAC;6BAC7D,IAAI;wBACP,YAAY,EAAE,aAAa;qBAC5B;oBACH,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CACV,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,MAAM,EAChC,mBAAmB,CAAC,GAAG,CACxB,CAAC,IAAI;wBACN,YAAY,EAAE,aAAa;qBAC5B,CAAA;aACN;iBAAM;gBACL,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;wBACpC,YAAY,EAAE,mBAAmB;qBAClC;oBACH,CAAC,CAAC;wBACE,SAAS,EAAE,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,MAAM;wBAC3C,YAAY,EAAE,mBAAmB;qBAClC,CAAA;aACN;YACD,OAAO;gBACL,IAAI,EAAE,iBAAiB;gBACvB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,eAAe;oBAC5B,KAAK,EAAE;wBACL,QAAQ,EAAE,oBAAoB;qBAC/B;iBACF;aACF,CAAA;QACH,KAAK,KAAK;YACR,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,gBAAgB;YACnB,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,UAAU;YACb,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,gBAAgB;YACnB,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,UAAU;YACb,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,mBAAmB;gBACzB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,WAAW;YACd,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,aAAa;YAChB,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,MAAM;YACT,IAAI,mBAAmB,CAAC,GAAG,EAAE;gBAC3B,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,mBAAmB,CAAC,GAAG,CAAC;6BAC7D,IAAI;wBACP,YAAY,EAAE,aAAa;qBAC5B;oBACH,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CACV,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,OAAO,EACjC,mBAAmB,CAAC,GAAG,CACxB,CAAC,IAAI;wBACN,YAAY,EAAE,aAAa;qBAC5B,CAAA;aACN;iBAAM;gBACL,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;wBACpC,YAAY,EAAE,mBAAmB;qBAClC;oBACH,CAAC,CAAC;wBACE,SAAS,EAAE,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,OAAO;wBAC5C,YAAY,EAAE,mBAAmB;qBAClC,CAAA;aACN;YACD,OAAO;gBACL,IAAI,EAAE,iBAAiB;gBACvB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,aAAa;oBACnB,YAAY,EAAE,eAAe;oBAC7B,YAAY,EAAE,oBAAoB;oBAClC,eAAe;iBAChB;aACF,CAAA;QACH,KAAK,KAAK;YACR,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,KAAK;YACR,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,YAAY;YACf,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,eAAe;YAClB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,gBAAgB;YACnB,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,UAAU;YACb,IAAI,mBAAmB,CAAC,GAAG,EAAE;gBAC3B,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,mBAAmB,CAAC,GAAG,CAAC;6BAC7D,IAAI;wBACP,YAAY,EAAE,aAAa;qBAC5B;oBACH,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CACV,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,MAAM,EAChC,mBAAmB,CAAC,GAAG,CACxB,CAAC,IAAI;wBACN,YAAY,EAAE,aAAa;qBAC5B,CAAA;aACN;iBAAM;gBACL,oBAAoB,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;oBAC9C,CAAC,CAAC;wBACE,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC;wBACpC,YAAY,EAAE,mBAAmB;qBAClC;oBACH,CAAC,CAAC;wBACE,SAAS,EAAE,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,MAAM;wBAC3C,YAAY,EAAE,mBAAmB;qBAClC,CAAA;aACN;YACD,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,iBAAiB;oBACvB,aAAa,EAAE,eAAe;oBAC9B,KAAK,EAAE;wBACL,QAAQ,EAAE,oBAAoB;qBAC/B;iBACF;aACF,CAAA;QACH,KAAK,KAAK;YACR,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,QAAQ;YACX,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QACH,KAAK,KAAK;YACR,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,eAAe;iBAC7B;aACF,CAAA;QACH,KAAK,UAAU;YACb,OAAO,IAAA,qCAA4B,EACjC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;QAEH;YACE,OAAO,IAAA,iCAAwB,EAC7B,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,EACvB,aAAa,EACb,UAAU,CACX,CAAA;KACJ;AACH,CAAC"}
+{"version":3,"file":"ucscTrackHub.js","sourceRoot":"","sources":["../../src/ucsc-trackhub/ucscTrackHub.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAEA,6CAA4E;AAC5E,8CAAoD;AACpD,sDAGkC;AAClC,sEAA6C;AAEpC,yBAFF,wBAAc,CAEE;AAEhB,KAAK,UAAU,YAAY,CAAC,WAAyB;IAC1D,IAAI;QACF,MAAM,WAAW,GAAG,MAAM,IAAA,iBAAY,EAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QACpE,MAAM,EAAE,OAAO,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;QAClD,OAAO,IAAI,OAAO,CAAC,WAAW,CAAC,CAAA;KAChC;IAAC,OAAO,KAAK,EAAE;QACd,MAAM,IAAI,KAAK,CAAC,yCAAyC,KAAK,GAAG,CAAC,CAAA;KACnE;AACH,CAAC;AARD,oCAQC;AAEM,KAAK,UAAU,gBAAgB,CAAC,UAAwB;IAC7D,MAAM,eAAe,GAAG,MAAM,IAAA,iBAAY,EAAC,UAAU,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;IACvE,MAAM,EAAE,WAAW,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;IACtD,OAAO,IAAI,WAAW,CAAC,eAAe,CAAC,CAAA;AACzC,CAAC;AAJD,4CAIC;AAEM,KAAK,UAAU,gBAAgB,CAAC,UAAwB;IAC7D,MAAM,IAAI,GAAG,MAAM,IAAA,iBAAY,EAAC,UAAU,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5D,MAAM,EAAE,WAAW,EAAE,GAAG,wDAAa,gBAAgB,GAAC,CAAA;IACtD,OAAO,IAAI,WAAW,CAAC,IAAI,CAAC,CAAA;AAC9B,CAAC;AAJD,4CAIC;AAED,SAAgB,OAAO,CAAC,KAAa,EAAE,IAAqB;IAC1D,OAAO;QACL,GAAG,EAAE,IAAI,GAAG,CAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI;QAClC,YAAY,EAAE,aAAa;KAC5B,CAAA;AACH,CAAC;AALD,0BAKC;AAED,SAAgB,UAAU,CAAC,KAAa,EAAE,GAAW,EAAE,IAAqB;IAC1E,OAAO,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;AAC1D,CAAC;AAFD,gCAEC;AAED,SAAgB,QAAQ,CAAC,KAAa,EAAE,GAAY;IAClD,OAAO,KAAK;QACV,CAAC,CAAC;YACE,GAAG,EAAE,KAAK;YACV,YAAY,EAAE,WAAW;SAC1B;QACH,CAAC,CAAC;YACE,GAAG,EAAE,GAAG;YACR,YAAY,EAAE,aAAa;SAC5B,CAAA;AACP,CAAC;AAVD,4BAUC;AAED,SAAgB,cAAc,CAC5B,OAAoB,EACpB,UAAwB,EACxB,YAAoB,EACpB,eAAoB;IAEpB,MAAM,MAAM,GAAQ,EAAE,CAAA;IAEtB,OAAO,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,SAAS,EAAE,EAAE;;QACnC,MAAM,SAAS,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAa,CAAA;QACtD,MAAM,eAAe,GAAG;YACtB,YAAY;YACZ,gBAAgB;YAChB,WAAW;YACX,MAAM;SACP,CAAA;QACD,IAAI,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,eAAe,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE;YACxD,OAAM;SACP;QACD,MAAM,YAAY,GAAG,EAAE,CAAA;QACvB,IAAI,gBAAgB,GAAG,SAAS,CAAA;QAChC,GAAG;YACD,gBAAgB,GAAG,CAAA,MAAA,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,0CAAE,GAAG,CAAC,QAAQ,CAAC,KAAI,EAAE,CAAA;YACrE,IAAI,gBAAgB,EAAE;gBACpB,CAAC;gBAAA,CAAC,gBAAgB,CAAC,GAAG,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBACjD,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC,CAAA;aACjD;SACF,QAAQ,gBAAgB,EAAC;QAC1B,YAAY,CAAC,OAAO,EAAE,CAAA;QACtB,MAAM,UAAU,GAAG,YAAY;aAC5B,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,GAAG,CAAC,YAAY,CAAC,CAAC;aAC9B,MAAM,CAAC,CAAC,CAAC,EAAe,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAClC,MAAM,GAAG,GAAG,eAAe,CACzB,KAAK,EACL,UAAU,EACV,UAAU,EACV,OAAO,EACP,eAAe,CAChB,CAAA;QACD,MAAM,CAAC,IAAI,CAAC;YACV,GAAG,GAAG;YACN,OAAO,EAAE,iBAAiB,IAAA,iBAAU,EAAC,GAAG,CAAC,EAAE;YAC3C,aAAa,EAAE,CAAC,YAAY,CAAC;SAC9B,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;IAEF,OAAO,MAAM,CAAA;AACf,CAAC;AA/CD,wCA+CC;AAED,SAAS,eAAe,CACtB,KAAe,EACf,UAAoB,EACpB,UAAwB,EACxB,OAAoB,EACpB,eAAoB;;IAEpB,IAAI,SAAS,GAAG,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,EAAE,CAAA;IAC1C,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,EAAE,CAAA;IAChD,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,CAAA;IAClD,MAAM,KAAK,GAAG,IAAA,oBAAa,EAAC,UAAU,CAAC,CAAA;IACvC,IAAI,CAAC,SAAS,EAAE;QACd,SAAS,GAAG,MAAA,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,0CAAE,GAAG,CAAC,MAAM,CAAC,CAAA;KAChE;IACD,IAAI,aAAa,GAAG,CAAA,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAE,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,KAAI,EAAE,CAAA;IAClD,IAAI,aAAa,KAAK,KAAK,IAAI,UAAU,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE;QACxE,aAAa,GAAG,MAAM,CAAA;KACvB;IACD,MAAM,eAAe,GAAG,KAAK;QAC3B,CAAC,CAAC,OAAO,CAAC,UAAU,EAAE,UAAU,CAAC;QACjC,CAAC,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAA;IAExB,QAAQ,aAAa,EAAE;QACrB,KAAK,KAAK;YACR,OAAO;gBACL,IAAI,EAAE,iBAAiB;gBACvB,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC;gBAC7B,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,eAAe;oBAC5B,KAAK,EAAE;wBACL,QAAQ,EAAE,KAAK;4BACb,CAAC,CAAC,UAAU,CAAC,UAAU,EAAE,UAAU,GAAG,MAAM,EAAE,UAAU,CAAC;4BACzD,CAAC,CAAC,QAAQ,CAAC,UAAU,EAAE,UAAU,GAAG,MAAM,CAAC;qBAC9C;iBACF;aACF,CAAA;QAEH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,UAAU;YACb,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,aAAa;YAChB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;gBACD,QAAQ,EAAE;oBACR,IAAI,EAAE,oBAAoB;iBAC3B;aACF,CAAA;QACH,KAAK,QAAQ;YACX,OAAO;gBACL,IAAI,EAAE,mBAAmB;gBACzB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QAEH,KAAK,MAAM;YACT,OAAO;gBACL,IAAI,EAAE,iBAAiB;gBACvB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,aAAa;oBACnB,YAAY,EAAE,eAAe;oBAC7B,YAAY,EAAE,KAAK;wBACjB,CAAC,CAAC,UAAU,CAAC,UAAU,EAAE,UAAU,GAAG,OAAO,EAAE,UAAU,CAAC;wBAC1D,CAAC,CAAC,QAAQ,CAAC,UAAU,EAAE,UAAU,GAAG,OAAO,CAAC;oBAC9C,eAAe;iBAChB;aACF,CAAA;QAEH,KAAK,eAAe;YAClB,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,eAAe;oBACrB,cAAc,EAAE,eAAe;iBAChC;aACF,CAAA;QACH,KAAK,gBAAgB;YACnB,OAAO,IAAA,qCAA4B,EAAC,IAAI,EAAE,aAAa,EAAE,UAAU,CAAC,CAAA;QACtE,KAAK,UAAU;YACb,OAAO;gBACL,IAAI,EAAE,cAAc;gBACpB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,iBAAiB;oBACvB,aAAa,EAAE,eAAe;oBAC9B,KAAK,EAAE;wBACL,QAAQ,EAAE,KAAK;4BACb,CAAC,CAAC,UAAU,CAAC,UAAU,EAAE,UAAU,GAAG,MAAM,EAAE,UAAU,CAAC;4BACzD,CAAC,CAAC,QAAQ,CAAC,UAAU,EAAE,UAAU,GAAG,MAAM,CAAC;qBAC9C;iBACF;aACF,CAAA;QAEH,KAAK,KAAK;YACR,OAAO;gBACL,IAAI,EAAE,UAAU;gBAChB,IAAI;gBACJ,WAAW,EAAE,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC;gBACnC,QAAQ,EAAE,UAAU;gBACpB,OAAO,EAAE;oBACP,IAAI,EAAE,YAAY;oBAClB,WAAW,EAAE,eAAe;iBAC7B;aACF,CAAA;QAEH,oBAAoB;QACpB,kBAAkB;QAClB,kBAAkB;QAClB,yBAAyB;QACzB,kBAAkB;QAClB,qBAAqB;QACrB,uBAAuB;QACvB,kBAAkB;QAClB,6BAA6B;QAC7B,uBAAuB;QACvB,6BAA6B;QAC7B,wBAAwB;QACxB,0BAA0B;QAC1B;YACE,OAAO,IAAA,iCAAwB,EAAC,IAAI,EAAE,aAAa,EAAE,UAAU,CAAC,CAAA;KACnE;AACH,CAAC"}

package/esm/AddConnectionWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModel } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/AddConnectionWidget/index.js

@@ -1,4 +1,17 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-export { default as stateModel } from './model';
-export const configSchema = ConfigurationSchema('AddConnectionWidget', {});
+import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
+import { lazy } from 'react';
+import stateModel from './model';
+const configSchema = ConfigurationSchema('AddConnectionWidget', {});
+export default (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new WidgetType({
+            name: 'AddConnectionWidget',
+            heading: 'Add a connection',
+            configSchema,
+            stateModel,
+            ReactComponent: lazy(() => import('./components/AddConnectionWidget')),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/esm/AddConnectionWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,UAAU,EAAE,MAAM,SAAS,CAAA;AAC/C,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAA;AAEhE,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,UAAU,MAAM,SAAS,CAAA;AAChC,MAAM,YAAY,GAAG,mBAAmB,CAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA;AAEnE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,UAAU,CAAC;YACpB,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EAAE,kBAAkB;YAC3B,YAAY;YACZ,UAAU;YACV,cAAc,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,kCAAkC,CAAC,CAAC;SACvE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/AddTrackWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModelFactory } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/AddTrackWidget/index.js

@@ -1,4 +1,17 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-export { default as stateModelFactory } from './model';
-export const configSchema = ConfigurationSchema('AddTrackWidget', {});
+import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
+import { lazy } from 'react';
+import stateModelFactory from './model';
+const configSchema = ConfigurationSchema('AddTrackWidget', {});
+export default (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new WidgetType({
+            name: 'AddTrackWidget',
+            heading: 'Add a track',
+            configSchema,
+            stateModel: stateModelFactory(pluginManager),
+            ReactComponent: lazy(() => import('./components/AddTrackWidget')),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/esm/AddTrackWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAA;AAEhE,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,iBAAiB,MAAM,SAAS,CAAA;AACvC,MAAM,YAAY,GAAG,mBAAmB,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA;AAE9D,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,UAAU,CAAC;YACpB,IAAI,EAAE,gBAAgB;YACtB,OAAO,EAAE,aAAa;YACtB,YAAY;YACZ,UAAU,EAAE,iBAAiB,CAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,6BAA6B,CAAC,CAAC;SAClE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/HierarchicalTrackSelectorWidget/index.d.ts

@@ -1,4 +1,7 @@
 import stateModelFactory, { HierarchicalTrackSelectorModel } from './model';
 import configSchema from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
 export { stateModelFactory, configSchema };
 export type { HierarchicalTrackSelectorModel };
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/HierarchicalTrackSelectorWidget/index.js

@@ -1,4 +1,17 @@
 import stateModelFactory from './model';
 import configSchema from './configSchema';
+import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
+import { lazy } from 'react';
 export { stateModelFactory, configSchema };
+export default (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new WidgetType({
+            name: 'HierarchicalTrackSelectorWidget',
+            heading: 'Available tracks',
+            configSchema,
+            stateModel: stateModelFactory(pluginManager),
+            ReactComponent: lazy(() => import('./components/HierarchicalTrackSelector')),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/esm/HierarchicalTrackSelectorWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,iBAAqD,MAAM,SAAS,CAAA;AAC3E,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,iBAAqD,MAAM,SAAS,CAAA;AAC3E,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAA;AAChE,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,EAAE,iBAAiB,EAAE,YAAY,EAAE,CAAA;AAG1C,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,UAAU,CAAC;YACpB,IAAI,EAAE,iCAAiC;YACvC,OAAO,EAAE,kBAAkB;YAC3B,YAAY;YACZ,UAAU,EAAE,iBAAiB,CAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAI,CAClB,GAAG,EAAE,CAAC,MAAM,CAAC,wCAAwC,CAAC,CACvD;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/esm/PluginStoreWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModelFactory } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/PluginStoreWidget/index.js

@@ -1,4 +1,17 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-export { default as stateModelFactory } from './model';
-export const configSchema = ConfigurationSchema('PluginStoreWidget', {});
+import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
+import { lazy } from 'react';
+import stateModelFactory from './model';
+const configSchema = ConfigurationSchema('PluginStoreWidget', {});
+export default (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new WidgetType({
+            name: 'PluginStoreWidget',
+            heading: 'Plugin store',
+            configSchema,
+            stateModel: stateModelFactory(pluginManager),
+            ReactComponent: lazy(() => import('./components/PluginStoreWidget')),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/esm/PluginStoreWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAA;AAEhE,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,iBAAiB,MAAM,SAAS,CAAA;AACvC,MAAM,YAAY,GAAG,mBAAmB,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA;AAEjE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,UAAU,CAAC;YACpB,IAAI,EAAE,mBAAmB;YACzB,OAAO,EAAE,cAAc;YACvB,YAAY;YACZ,UAAU,EAAE,iBAAiB,CAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,gCAAgC,CAAC,CAAC;SACrE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}