@jbrowse/plugin-data-management 2.3.1 → 2.3.3

package/dist/AddConnectionWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModel } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/AddConnectionWidget/index.js

@@ -1,11 +1,45 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = exports.stateModel = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
-var model_1 = require("./model");
-Object.defineProperty(exports, "stateModel", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-exports.configSchema = (0, configuration_1.ConfigurationSchema)('AddConnectionWidget', {});
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const react_1 = require("react");
+const model_1 = __importDefault(require("./model"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('AddConnectionWidget', {});
+exports.default = (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new pluggableElementTypes_1.WidgetType({
+            name: 'AddConnectionWidget',
+            heading: 'Add a connection',
+            configSchema,
+            stateModel: model_1.default,
+            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/AddConnectionWidget')))),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/dist/AddConnectionWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+DAAiE;AACjE,+EAAgE;AAEhE,iCAA4B;AAE5B,oDAAgC;AAChC,MAAM,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA;AAEnE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,kCAAU,CAAC;YACpB,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EAAE,kBAAkB;YAC3B,YAAY;YACZ,UAAU,EAAV,eAAU;YACV,cAAc,EAAE,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,kCAAkC,GAAC,CAAC;SACvE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/AddTrackWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModelFactory } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/AddTrackWidget/index.js

@@ -1,11 +1,45 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = exports.stateModelFactory = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
-var model_1 = require("./model");
-Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-exports.configSchema = (0, configuration_1.ConfigurationSchema)('AddTrackWidget', {});
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const react_1 = require("react");
+const model_1 = __importDefault(require("./model"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('AddTrackWidget', {});
+exports.default = (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new pluggableElementTypes_1.WidgetType({
+            name: 'AddTrackWidget',
+            heading: 'Add a track',
+            configSchema,
+            stateModel: (0, model_1.default)(pluginManager),
+            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/AddTrackWidget')))),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/dist/AddTrackWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+DAAiE;AACjE,+EAAgE;AAEhE,iCAA4B;AAE5B,oDAAuC;AACvC,MAAM,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA;AAE9D,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,kCAAU,CAAC;YACpB,IAAI,EAAE,gBAAgB;YACtB,OAAO,EAAE,aAAa;YACtB,YAAY;YACZ,UAAU,EAAE,IAAA,eAAiB,EAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,6BAA6B,GAAC,CAAC;SAClE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/index.d.ts

@@ -1,4 +1,7 @@
 import stateModelFactory, { HierarchicalTrackSelectorModel } from './model';
 import configSchema from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
 export { stateModelFactory, configSchema };
 export type { HierarchicalTrackSelectorModel };
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/HierarchicalTrackSelectorWidget/index.js

@@ -1,4 +1,27 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
@@ -8,4 +31,17 @@ const model_1 = __importDefault(require("./model"));
 exports.stateModelFactory = model_1.default;
 const configSchema_1 = __importDefault(require("./configSchema"));
 exports.configSchema = configSchema_1.default;
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const react_1 = require("react");
+exports.default = (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new pluggableElementTypes_1.WidgetType({
+            name: 'HierarchicalTrackSelectorWidget',
+            heading: 'Available tracks',
+            configSchema: configSchema_1.default,
+            stateModel: (0, model_1.default)(pluginManager),
+            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/HierarchicalTrackSelector')))),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/dist/HierarchicalTrackSelectorWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,oDAA2E;AAGlE,4BAHF,eAAiB,CAGE;AAF1B,kEAAyC;AAEb,uBAFrB,sBAAY,CAEqB"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,oDAA2E;AAMlE,4BANF,eAAiB,CAME;AAL1B,kEAAyC;AAKb,uBALrB,sBAAY,CAKqB;AAHxC,+EAAgE;AAChE,iCAA4B;AAK5B,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,kCAAU,CAAC;YACpB,IAAI,EAAE,iCAAiC;YACvC,OAAO,EAAE,kBAAkB;YAC3B,YAAY,EAAZ,sBAAY;YACZ,UAAU,EAAE,IAAA,eAAiB,EAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAA,YAAI,EAClB,GAAG,EAAE,mDAAQ,wCAAwC,GAAC,CACvD;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/PluginStoreWidget/index.d.ts

@@ -1,2 +1,3 @@
-export { default as stateModelFactory } from './model';
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/PluginStoreWidget/index.js

@@ -1,11 +1,45 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = exports.stateModelFactory = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
-var model_1 = require("./model");
-Object.defineProperty(exports, "stateModelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-exports.configSchema = (0, configuration_1.ConfigurationSchema)('PluginStoreWidget', {});
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const react_1 = require("react");
+const model_1 = __importDefault(require("./model"));
+const configSchema = (0, configuration_1.ConfigurationSchema)('PluginStoreWidget', {});
+exports.default = (pluginManager) => {
+    pluginManager.addWidgetType(() => {
+        return new pluggableElementTypes_1.WidgetType({
+            name: 'PluginStoreWidget',
+            heading: 'Plugin store',
+            configSchema,
+            stateModel: (0, model_1.default)(pluginManager),
+            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/PluginStoreWidget')))),
+        });
+    });
+};
 //# sourceMappingURL=index.js.map

package/dist/PluginStoreWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+DAAiE;AACjE,+EAAgE;AAEhE,iCAA4B;AAE5B,oDAAuC;AACvC,MAAM,YAAY,GAAG,IAAA,mCAAmB,EAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA;AAEjE,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,aAAa,CAAC,GAAG,EAAE;QAC/B,OAAO,IAAI,kCAAU,CAAC;YACpB,IAAI,EAAE,mBAAmB;YACzB,OAAO,EAAE,cAAc;YACvB,YAAY;YACZ,UAAU,EAAE,IAAA,eAAiB,EAAC,aAAa,CAAC;YAC5C,cAAc,EAAE,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,gCAAgC,GAAC,CAAC;SACrE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}

package/dist/index.js

@@ -28,14 +28,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SetDefaultSession = exports.AssemblyManager = void 0;
 const react_1 = require("react");
-const ConnectionType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ConnectionType"));
-const WidgetType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/WidgetType"));
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
-const ucsc_trackhub_1 = require("./ucsc-trackhub");
-const AddTrackWidget_1 = require("./AddTrackWidget");
-const AddConnectionWidget_1 = require("./AddConnectionWidget");
-const HierarchicalTrackSelectorWidget_1 = require("./HierarchicalTrackSelectorWidget");
-const PluginStoreWidget_1 = require("./PluginStoreWidget");
+const ucsc_trackhub_1 = __importDefault(require("./ucsc-trackhub"));
+const AddTrackWidget_1 = __importDefault(require("./AddTrackWidget"));
+const AddConnectionWidget_1 = __importDefault(require("./AddConnectionWidget"));
+const PluginStoreWidget_1 = __importDefault(require("./PluginStoreWidget"));
+const HierarchicalTrackSelectorWidget_1 = __importDefault(require("./HierarchicalTrackSelectorWidget"));
 const SetDefaultSession = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SetDefaultSession'))));
 exports.SetDefaultSession = SetDefaultSession;
 const AssemblyManager = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AssemblyManager'))));
@@ -50,50 +48,11 @@ class default_1 extends Plugin_1.default {
         };
     }
     install(pluginManager) {
-        pluginManager.addConnectionType(() => new ConnectionType_1.default({
-            name: 'UCSCTrackHubConnection',
-            configSchema: ucsc_trackhub_1.configSchema,
-            stateModel: (0, ucsc_trackhub_1.modelFactory)(pluginManager),
-            displayName: 'UCSC Track Hub',
-            description: 'A track or assembly hub in the Track Hub format',
-            url: '//genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html#Intro',
-        }));
-        pluginManager.addWidgetType(() => {
-            return new WidgetType_1.default({
-                name: 'HierarchicalTrackSelectorWidget',
-                heading: 'Available tracks',
-                configSchema: HierarchicalTrackSelectorWidget_1.configSchema,
-                stateModel: (0, HierarchicalTrackSelectorWidget_1.stateModelFactory)(pluginManager),
-                ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector')))),
-            });
-        });
-        pluginManager.addWidgetType(() => {
-            return new WidgetType_1.default({
-                name: 'AddTrackWidget',
-                heading: 'Add a track',
-                configSchema: AddTrackWidget_1.configSchema,
-                stateModel: (0, AddTrackWidget_1.stateModelFactory)(pluginManager),
-                ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddTrackWidget/components/AddTrackWidget')))),
-            });
-        });
-        pluginManager.addWidgetType(() => {
-            return new WidgetType_1.default({
-                name: 'AddConnectionWidget',
-                heading: 'Add a connection',
-                configSchema: AddConnectionWidget_1.configSchema,
-                stateModel: AddConnectionWidget_1.stateModel,
-                ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddConnectionWidget/components/AddConnectionWidget')))),
-            });
-        });
-        pluginManager.addWidgetType(() => {
-            return new WidgetType_1.default({
-                name: 'PluginStoreWidget',
-                heading: 'Plugin store',
-                configSchema: PluginStoreWidget_1.configSchema,
-                stateModel: (0, PluginStoreWidget_1.stateModelFactory)(pluginManager),
-                ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./PluginStoreWidget/components/PluginStoreWidget')))),
-            });
-        });
+        (0, ucsc_trackhub_1.default)(pluginManager);
+        (0, AddTrackWidget_1.default)(pluginManager);
+        (0, HierarchicalTrackSelectorWidget_1.default)(pluginManager);
+        (0, AddConnectionWidget_1.default)(pluginManager);
+        (0, PluginStoreWidget_1.default)(pluginManager);
     }
     configure(_pluginManager) { }
 }

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/ucsc-trackhub/index.d.ts

@@ -1,2 +1,3 @@
-export { default as modelFactory } from './model';
-export { default as configSchema } from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/ucsc-trackhub/index.js

@@ -3,9 +3,17 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchema = exports.modelFactory = void 0;
-var model_1 = require("./model");
-Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_1).default; } });
-var configSchema_1 = require("./configSchema");
-Object.defineProperty(exports, "configSchema", { enumerable: true, get: function () { return __importDefault(configSchema_1).default; } });
+const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
+const model_1 = __importDefault(require("./model"));
+const configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (pluginManager) => {
+    pluginManager.addConnectionType(() => new pluggableElementTypes_1.ConnectionType({
+        name: 'UCSCTrackHubConnection',
+        configSchema: configSchema_1.default,
+        stateModel: (0, model_1.default)(pluginManager),
+        displayName: 'UCSC Track Hub',
+        description: 'A track or assembly hub in the Track Hub format',
+        url: '//genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html#Intro',
+    }));
+};
 //# sourceMappingURL=index.js.map

package/dist/ucsc-trackhub/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ucsc-trackhub/index.ts"],"names":[],"mappings":";;;;;;AAAA,iCAAiD;AAAxC,sHAAA,OAAO,OAAgB;AAChC,+CAAwD;AAA/C,6HAAA,OAAO,OAAgB"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/ucsc-trackhub/index.ts"],"names":[],"mappings":";;;;;AAAA,+EAAoE;AAGpE,oDAAuC;AACvC,kEAAyC;AAEzC,kBAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,iBAAiB,CAC7B,GAAG,EAAE,CACH,IAAI,sCAAc,CAAC;QACjB,IAAI,EAAE,wBAAwB;QAC9B,YAAY,EAAZ,sBAAY;QACZ,UAAU,EAAE,IAAA,eAAiB,EAAC,aAAa,CAAC;QAC5C,WAAW,EAAE,gBAAgB;QAC7B,WAAW,EAAE,iDAAiD;QAC9D,GAAG,EAAE,6DAA6D;KACnE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/dist/ucsc-trackhub/model.js

@@ -49,32 +49,26 @@ function UCSCTrackHubConnection(pluginManager) {
                     if (!conf) {
                         throw new Error(`Cannot find assembly for "${genomeName}" from the genomes file for connection "${connectionName}"`);
                     }
-                    const trackDb = genome.get('trackDb');
-                    if (!trackDb) {
+                    const db = genome.get('trackDb');
+                    if (!db) {
                         throw new Error('genomesFile not found on hub');
                     }
-                    const trackDbFileLocation = hubUri
+                    const base = new URL(genomeFile, hubUri);
+                    const trackDbLoc = hubUri
                         ? {
-                            uri: new URL(trackDb, new URL(genomeFile, hubUri)).href,
+                            uri: new URL(db, base).href,
                             locationType: 'UriLocation',
                         }
                         : {
-                            localPath: trackDb,
+                            localPath: db,
                             locationType: 'LocalPathLocation',
                         };
-                    trackDbData.push([
-                        trackDbFileLocation,
-                        await (0, ucscTrackHub_1.fetchTrackDbFile)(trackDbFileLocation),
-                        genomeName,
-                        conf,
-                    ]);
+                    const trackDb = await (0, ucscTrackHub_1.fetchTrackDbFile)(trackDbLoc);
+                    trackDbData.push([trackDbLoc, trackDb, genomeName, conf]);
                 }
-                for (const [trackDbFileLocation, trackDbFile, genomeName, conf,] of trackDbData) {
-                    const sequenceAdapter = (0, configuration_1.readConfObject)(conf, [
-                        'sequence',
-                        'adapter',
-                    ]);
-                    self.addTrackConfs((0, ucscTrackHub_1.generateTracks)(trackDbFile, trackDbFileLocation, genomeName, sequenceAdapter));
+                for (const [trackDbLoc, trackDbFile, genomeName, conf,] of trackDbData) {
+                    const seqAdapter = (0, configuration_1.readConfObject)(conf, ['sequence', 'adapter']);
+                    self.addTrackConfs((0, ucscTrackHub_1.generateTracks)(trackDbFile, trackDbLoc, genomeName, seqAdapter));
                 }
             }
             catch (e) {

package/dist/ucsc-trackhub/model.js.map

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package/dist/ucsc-trackhub/ucscTrackHub.d.ts

@@ -1,6 +1,24 @@
-export function fetchHubFile(hubFileLocation: any): Promise<import("@gmod/ucsc-hub").HubFile>;
-export function fetchGenomesFile(genomesFileLocation: any): Promise<import("@gmod/ucsc-hub").GenomesFile>;
-export function fetchTrackDbFile(trackDbFileLocation: any): Promise<import("@gmod/ucsc-hub").TrackDbFile>;
-export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
+import { TrackDbFile } from '@gmod/ucsc-hub';
+import { FileLocation } from '@jbrowse/core/util';
+import ucscAssemblies from './ucscAssemblies';
 export { ucscAssemblies };
-import ucscAssemblies from "./ucscAssemblies";
+export declare function fetchHubFile(hubLocation: FileLocation): Promise<import("@gmod/ucsc-hub").HubFile>;
+export declare function fetchGenomesFile(genomesLoc: FileLocation): Promise<import("@gmod/ucsc-hub").GenomesFile>;
+export declare function fetchTrackDbFile(trackDbLoc: FileLocation): Promise<TrackDbFile>;
+export declare function makeLoc(first: string, base: {
+    uri: string;
+}): {
+    uri: string;
+    locationType: string;
+};
+export declare function makeLocAlt(first: string, alt: string, base: {
+    uri: string;
+}): {
+    uri: string;
+    locationType: string;
+};
+export declare function makeLoc2(first: string, alt?: string): {
+    uri: string | undefined;
+    locationType: string;
+};
+export declare function generateTracks(trackDb: TrackDbFile, trackDbLoc: FileLocation, assemblyName: string, sequenceAdapter: any): any;