npm - @jbrowse/plugin-data-management - Versions diffs - 2.1.3 → 2.1.5 - Mend

@jbrowse/plugin-data-management 2.1.3 → 2.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (72) hide show

package/esm/AddConnectionWidget/components/AddConnectionWidget.js CHANGED Viewed

@@ -2,7 +2,7 @@ import React, { useState } from 'react';
 import { getSession } from '@jbrowse/core/util';
 import { Button, Step, StepContent, StepLabel, Stepper, Typography, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { observer, PropTypes as MobxPropTypes } from 'mobx-react';
+import { observer } from 'mobx-react';
 import { getEnv } from 'mobx-state-tree';
 // locals
 import ConfigureConnection from './ConfigureConnection';
@@ -24,25 +24,25 @@ const useStyles = makeStyles()(theme => ({
 }));
 const steps = ['Select a Connection Type', 'Configure Connection'];
 function AddConnectionWidget({ model }) {
-    const [connectionType, setConnectionType] = useState({});
-    const [configModel, setConfigModel] = useState({});
-    const [configModelReady, setConfigModelReady] = useState(true);
+    const [connectionType, setConnectionType] = useState();
+    const [configModel, setConfigModel] = useState();
     const [activeStep, setActiveStep] = useState(0);
     const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(session);
-    function handleSetConnectionType(newConnectionType) {
-        setConnectionType(newConnectionType);
-        setConfigModel(newConnectionType.configSchema.create({
-            connectionId: `${newConnectionType.name}-${Date.now()}`,
-        }, getEnv(model)));
-    }
     function stepContent() {
         switch (activeStep) {
             case 0:
-                return (React.createElement(ConnectionTypeSelect, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: handleSetConnectionType }));
+                return (React.createElement(ConnectionTypeSelect, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: c => {
+                        setConnectionType(c);
+                        if (c) {
+                            setConfigModel(c.configSchema.create({
+                                connectionId: `${c.name}-${Date.now()}`,
+                            }, getEnv(model)));
+                        }
+                    } }));
             case 1:
-                return (React.createElement(ConfigureConnection, { connectionType: connectionType, model: configModel, setModelReady: setConfigModelReady }));
+                return connectionType && configModel ? (React.createElement(ConfigureConnection, { connectionType: connectionType, model: configModel, session: session })) : null;
             default:
                 return React.createElement(Typography, null, "Unknown step");
         }
@@ -60,15 +60,13 @@ function AddConnectionWidget({ model }) {
     }
     function handleFinish() {
         const connectionConf = session.addConnectionConf(configModel);
-        session.makeConnection(connectionConf);
+        if (session.makeConnection) {
+            session.makeConnection(connectionConf);
+        }
         session.hideWidget(model);
     }
     function checkNextEnabled() {
-        if ((activeStep === 0 && connectionType.name) ||
-            (activeStep === 1 && configModel && configModelReady)) {
-            return true;
-        }
-        return false;
+        return ((activeStep === 0 && connectionType) || (activeStep === 1 && configModel));
     }
     return (React.createElement("div", { className: classes.root },
         React.createElement(Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (React.createElement(Step, { key: label },
@@ -79,8 +77,5 @@ function AddConnectionWidget({ model }) {
                     React.createElement(Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
                     React.createElement(Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
 }
-AddConnectionWidget.propTypes = {
-    model: MobxPropTypes.observableObject.isRequired,
-};
 export default observer(AddConnectionWidget);
 //# sourceMappingURL=AddConnectionWidget.js.map

package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map CHANGED Viewed

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package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts CHANGED Viewed

@@ -1,2 +1,10 @@
+/// <reference types="react" />
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { AbstractSessionModel } from '@jbrowse/core/util';
+declare const ConfigureConnection: (props: {
+    connectionType: ConnectionType;
+    model: AnyConfigurationModel;
+    session: AbstractSessionModel;
+}) => JSX.Element;
 export default ConfigureConnection;
-declare function ConfigureConnection(props: any): JSX.Element;

package/esm/AddConnectionWidget/components/ConfigureConnection.js CHANGED Viewed

@@ -1,11 +1,11 @@
 import React, { Suspense } from 'react';
 import { ConfigurationEditor } from '@jbrowse/plugin-config';
 import { observer } from 'mobx-react';
-const ConfigureConnection = observer(props => {
-    const { connectionType, model, setModelReady } = props;
+const ConfigureConnection = observer((props) => {
+    const { connectionType, model, session } = props;
     const ConfigEditorComponent = connectionType.configEditorComponent || ConfigurationEditor;
     return (React.createElement(Suspense, { fallback: React.createElement("div", null, "Loading...") },
-        React.createElement(ConfigEditorComponent, { model: { target: model }, setModelReady: setModelReady })));
+        React.createElement(ConfigEditorComponent, { model: { target: model }, session: session })));
 });
 export default ConfigureConnection;
 //# sourceMappingURL=ConfigureConnection.js.map

package/esm/AddConnectionWidget/components/ConfigureConnection.js.map CHANGED Viewed

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package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 /// <reference types="react" />
-import ConnectionType from '@jbrowse/core/pluggableElementTypes/ConnectionType';
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
 declare function ConnectionTypeSelect(props: {
     connectionTypeChoices: ConnectionType[];
-    connectionType: ConnectionType;
-    setConnectionType: Function;
-}): JSX.Element | null;
+    connectionType?: ConnectionType;
+    setConnectionType: (c?: ConnectionType) => void;
+}): JSX.Element;
 export default ConnectionTypeSelect;

package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js CHANGED Viewed

@@ -1,24 +1,18 @@
 import React, { useEffect } from 'react';
 import { IconButton, MenuItem, TextField } from '@mui/material';
+// icons
 import OpenInNewIcon from '@mui/icons-material/OpenInNew';
 function ConnectionTypeSelect(props) {
     const { connectionTypeChoices, connectionType, setConnectionType } = props;
     useEffect(() => {
-        if (!connectionType.name) {
+        if (!connectionType) {
             setConnectionType(connectionTypeChoices[0]);
         }
     });
-    function handleChange(event) {
-        setConnectionType(connectionTypeChoices.find((connectionTypeChoice) => connectionTypeChoice.name === event.target.value));
-    }
-    if (!connectionType.name) {
-        return null;
-    }
-    return (React.createElement("form", { autoComplete: "off" },
-        React.createElement(TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (React.createElement(React.Fragment, null,
-                connectionType.description,
-                connectionType.url ? (React.createElement(IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
-                    React.createElement(OpenInNewIcon, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map((connectionTypeChoice) => (React.createElement(MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name))))));
+    return (React.createElement("form", { autoComplete: "off" }, connectionType ? (React.createElement(TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (React.createElement(React.Fragment, null,
+            connectionType.description,
+            connectionType.url ? (React.createElement(IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
+                React.createElement(OpenInNewIcon, null))) : null)) : null, select: true, fullWidth: true, onChange: event => setConnectionType(connectionTypeChoices.find(c => c.name === event.target.value)), variant: "outlined" }, connectionTypeChoices.map(c => (React.createElement(MenuItem, { key: c.name, value: c.name }, c.displayName || c.name))))) : null));
 }
 export default ConnectionTypeSelect;
 //# sourceMappingURL=ConnectionTypeSelect.js.map

package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/AddConnectionWidget/index.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-export { default as stateModel } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModel } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/AddConnectionWidget/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/AddConnectionWidget/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAExD,eAAe,KAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,SAAS;IACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}

package/esm/AddTrackWidget/index.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-export { default as stateModelFactory } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModelFactory } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/AddTrackWidget/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/Header.js CHANGED Viewed

@@ -37,7 +37,6 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
     const [connectionManagerOpen, setConnectionManagerOpen] = useState(false);
     const [connectionToggleOpen, setConnectionToggleOpen] = useState(false);
     const { assemblyNames } = model;
-    const assemblyName = assemblyNames[assemblyIdx];
     function breakConnection(connectionConf, deletingConnection) {
         const name = readConfObject(connectionConf, 'name');
         // @ts-ignore
@@ -104,7 +103,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
         },
         ...assemblyMenuItems,
     ];
-    const items = getEnv(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems');
+    const items = getEnv(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems', [], { session });
     return (React.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
         React.createElement("div", { style: { display: 'flex' } },
             isSessionWithAddTracks(session) && (React.createElement(IconButton, { className: classes.menuIcon, onClick: event => setMenuEl(event.currentTarget) },
@@ -143,7 +142,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
             modalInfo ? (React.createElement(CloseConnectionDialog, { modalInfo: modalInfo, setModalInfo: setModalInfo })) : null,
             deleteDlgDetails ? (React.createElement(DeleteConnectionDialog, { handleClose: () => setDeleteDlgDetails(undefined), deleteDialogDetails: deleteDlgDetails, session: session })) : null,
             connectionManagerOpen ? (React.createElement(ManageConnectionsDialog, { handleClose: () => setConnectionManagerOpen(false), breakConnection: breakConnection, session: session })) : null,
-            connectionToggleOpen ? (React.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection, assemblyName: assemblyName })) : null)));
+            connectionToggleOpen ? (React.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection })) : null)));
 }
 export default observer(HierarchicalTrackSelectorHeader);
 //# sourceMappingURL=Header.js.map

package/esm/HierarchicalTrackSelectorWidget/components/Header.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js CHANGED Viewed

@@ -29,13 +29,12 @@ function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
             React.createElement("div", { className: classes.connectionContainer },
                 connections.map(conf => {
                     const name = readConfObject(conf, 'name');
-                    return (React.createElement("div", { key: `conn-${name}` },
-                        React.createElement(Typography, null,
-                            adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (React.createElement(IconButton, { onClick: () => breakConnection(conf, true) },
-                                React.createElement(CloseIcon, { color: "error" }))) : (React.createElement(Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
-                                React.createElement(IconButton, null,
-                                    React.createElement(CloseIcon, { color: "disabled" })))),
-                            name)));
+                    return (React.createElement(Typography, { key: `conn-${name}` },
+                        adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (React.createElement(IconButton, { onClick: () => breakConnection(conf, true) },
+                            React.createElement(CloseIcon, { color: "error" }))) : (React.createElement(Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
+                            React.createElement(IconButton, null,
+                                React.createElement(CloseIcon, { color: "disabled" })))),
+                        name));
                 }),
                 !connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
         React.createElement(DialogActions, null,

package/esm/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts CHANGED Viewed

@@ -1,10 +1,10 @@
 /// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
-declare function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConnection, }: {
+export declare function ellipses(slug: string): string;
+declare function ToggleConnectionDialog({ session, handleClose, breakConnection, }: {
     handleClose: () => void;
     session: AbstractSessionModel;
-    assemblyName: string;
     breakConnection: (arg: AnyConfigurationModel) => void;
 }): JSX.Element;
 declare const _default: typeof ToggleConnectionDialog;

package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js CHANGED Viewed

@@ -4,6 +4,9 @@ import { makeStyles } from 'tss-react/mui';
 import CloseIcon from '@mui/icons-material/Close';
 import { observer } from 'mobx-react';
 import { readConfObject, } from '@jbrowse/core/configuration';
+export function ellipses(slug) {
+    return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug;
+}
 const useStyles = makeStyles()(theme => ({
     closeButton: {
         position: 'absolute',
@@ -16,16 +19,9 @@ const useStyles = makeStyles()(theme => ({
         margin: theme.spacing(4),
     },
 }));
-function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConnection, }) {
+function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { connections, connectionInstances: instances = [] } = session;
-    const assemblySpecificConnections = connections.filter(c => {
-        const configAssemblyNames = readConfObject(c, 'assemblyNames');
-        if (configAssemblyNames.length === 0) {
-            return true;
-        }
-        return configAssemblyNames.includes(assemblyName);
-    });
     return (React.createElement(Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
         React.createElement(DialogTitle, null,
             "Turn on/off connections",
@@ -34,8 +30,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
         React.createElement(DialogContent, null,
             React.createElement(Typography, null, "Use the checkbox to turn on/off connections"),
             React.createElement("div", { className: classes.connectionContainer },
-                assemblySpecificConnections.map(conf => {
+                connections.map(conf => {
                     const name = readConfObject(conf, 'name');
+                    const assemblyNames = readConfObject(conf, 'assemblyNames');
                     const found = instances.find(conn => name === conn.name);
                     return (React.createElement(FormControlLabel, { key: conf.connectionId, control: React.createElement(Checkbox, { checked: !!found, onChange: () => {
                                 var _a;
@@ -45,11 +42,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
                                 else {
                                     (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
                                 }
-                            }, color: "primary" }), label: name }));
+                            }, color: "primary" }), label: `${name} (${ellipses(assemblyNames.join(','))})` }));
                 }),
-                !assemblySpecificConnections.length ? (React.createElement(Typography, null,
-                    "No connections found for ",
-                    assemblyName)) : null)),
+                !connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
         React.createElement(DialogActions, null,
             React.createElement(Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
 }

package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/model.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { types, getParent, getEnv } from 'mobx-state-tree';
+import { types, getParent, getEnv, getSnapshot, } from 'mobx-state-tree';
 import { getConf, readConfObject, } from '@jbrowse/core/configuration';
 import { getSession } from '@jbrowse/core/util';
 import { ElementId } from '@jbrowse/core/util/types/mst';
@@ -26,12 +26,9 @@ function filterTracks(tracks, self, assemblyName) {
     if (!assembly) {
         return [];
     }
+    const { allAliases } = assembly;
     return tracks
-        .filter(c => {
-        const trackConfAssemblies = readConfObject(c, 'assemblyNames');
-        const { allAliases } = assembly;
-        return hasAnyOverlap(allAliases, trackConfAssemblies);
-    })
+        .filter(c => hasAnyOverlap(allAliases, readConfObject(c, 'assemblyNames')))
         .filter(c => {
         const { displayTypes } = pluginManager.getViewType(self.view.type);
         const compatDisplays = displayTypes.map((d) => d.name);
@@ -171,21 +168,20 @@ export default function stateTreeFactory(pluginManager) {
             // eslint-disable-next-line @typescript-eslint/no-explicit-any
             self, self.trackConfigurations(assemblyName), self.collapsed);
             const session = getSession(self);
-            const { connections, connectionInstances } = session;
-            const conns = (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => {
-                const names = getConf(c, 'assemblyNames');
-                return names.length === 0 ? true : names.includes(assemblyName);
-            }).map((conn, index) => {
-                const c = connections[index];
-                return {
-                    id: c.connectionId,
-                    name: readConfObject(c, 'name'),
-                    children: this.connectionHierarchy(assemblyName, conn),
+            const { connectionInstances } = session;
+            const { assemblyManager } = getSession(self);
+            const assembly = assemblyManager.get(assemblyName);
+            const conns = (assembly &&
+                (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => hasAnyOverlap(assembly.allAliases, getConf(c, 'assemblyNames'))).map(c => ({
+                    // @ts-ignore
+                    id: getSnapshot(c).configuration,
+                    name: getConf(c, 'name'),
+                    children: this.connectionHierarchy(assemblyName, c),
                     state: {
                         expanded: true,
                     },
-                };
-            })) || [];
+                })))) ||
+                [];
             return {
                 name: 'Root',
                 id: 'Root',

package/esm/HierarchicalTrackSelectorWidget/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,EACL,SAAS,EACT,MAAM,EACN,WAAW,GAEZ,MAAM,iBAAiB,CAAA;AACxB,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CAAC,MAAc,EAAE,MAA6B;IACjE,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACxD,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAED,SAAS,YAAY,CAAC,MAA6B;IACjD,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;QACnB,MAAM,IAAI,KAAK,CAAC,aAAa,CAAC,CAAA;KAC/B;IACD,OAAO,CACL,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC;QAC9B,uBACE,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,aAAa,CAAC;YAChD,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,MAAM,CAC1C,GAAG,CACJ,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAElC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC;SAC9C,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACxB,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAA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package/esm/PluginStoreWidget/index.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-export { default as stateModelFactory } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModelFactory } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/PluginStoreWidget/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.js"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}

package/esm/ucsc-trackhub/model.d.ts CHANGED Viewed

@@ -1,14 +1,26 @@
 export default function UCSCTrackHubConnection(pluginManager: any): import("mobx-state-tree").IModelType<{
     name: import("mobx-state-tree").ISimpleType<string>;
-    tracks: import("mobx-state-tree").IArrayType<any>;
+    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 } & {
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
     type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
 }, {
     afterAttach(): void;
-    addTrackConf(trackConf: any): any;
-    addTrackConfs(trackConfs: any): any[];
-    setTrackConfs(trackConfs: any): import("mobx-state-tree").IMSTArray<any> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<any>>;
+    addTrackConf(trackConf: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
+    addTrackConfs(trackConfs: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
+    setTrackConfs(trackConfs: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
     connect(): void;

package/esm/ucsc-trackhub/ucscTrackHub.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
-export function fetchHubFile(hubFileLocation: any): Promise<any>;
-export function fetchGenomesFile(genomesFileLocation: any): Promise<any>;
-export function fetchTrackDbFile(trackDbFileLocation: any): Promise<any>;
+export function fetchHubFile(hubFileLocation: any): Promise<import("@gmod/ucsc-hub").HubFile>;
+export function fetchGenomesFile(genomesFileLocation: any): Promise<import("@gmod/ucsc-hub").GenomesFile>;
+export function fetchTrackDbFile(trackDbFileLocation: any): Promise<import("@gmod/ucsc-hub").TrackDbFile>;
 export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
 export { ucscAssemblies };
 import ucscAssemblies from "./ucscAssemblies";

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.1.3",
+  "version": "2.1.5",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -37,7 +37,7 @@
     "clean": "rimraf dist esm *.tsbuildinfo"
   },
   "dependencies": {
-    "@gmod/ucsc-hub": "^0.1.3",
+    "@gmod/ucsc-hub": "^0.1.6",
     "@mui/icons-material": "^5.0.1",
     "clsx": "^1.1.0",
     "react-virtualized-auto-sizer": "^1.0.2",
@@ -61,5 +61,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "ebd548ceb52adb36cf6ab437082b5b5feac1338e"
+  "gitHead": "bc5253ecdddeceeb999fffebf6dc6cf5f444e1c9"
 }