@jbrowse/plugin-data-management 1.5.0 → 1.5.4

package/dist/plugin-data-management.cjs.production.min.js

@@ -1,2 +1,2 @@
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r.createElement(g.TableRow,{key:i},r.createElement(g.TableCell,null,i),r.createElement(g.TableCell,null,l),r.createElement(g.TableCell,null,u?u.toString():""),r.createElement(g.TableCell,{className:o.buttonCell},r.createElement(g.IconButton,{"data-testid":"".concat(i,"-edit"),className:o.button,onClick:function(){n(!0),a(e)}},r.createElement(H,{color:"primary"})),r.createElement(g.IconButton,{"data-testid":"".concat(i,"-delete"),className:o.button,onClick:function(){!function(e){t.jbrowse.removeAssemblyConf(e)}(i)}},r.createElement(z,{color:"error"}))))}));return r.createElement(g.TableContainer,{component:g.Paper},r.createElement(g.Table,{className:o.table},r.createElement(g.TableHead,null,r.createElement(g.TableRow,null,r.createElement(g.TableCell,null,r.createElement(g.Typography,{variant:"h5"},"Name")),r.createElement(g.TableCell,null,r.createElement(g.Typography,{variant:"h5"},"Display 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m?r.createElement(r.Fragment,null,r.createElement(_t,{model:t,setHeaderHeight:u[1],setAssemblyIdx:c,assemblyIdx:l}),r.createElement(Mt,{tree:t.hierarchy(m),model:t,offset:o+s})):null})),Wt={__proto__:null,default:qt},Ut=b.makeStyles((function(e){return{spacing:{marginBottom:e.spacing(3)}}}));function Ht(e){var t,n=e.trackAdapter,a=e.trackType,o=Ut();return"SNPCoverageAdapter"===n.type?r.createElement(_,{className:o.spacing},"Selected ",r.createElement("code",null,a),". 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It is possible, however, that there is a newer version that can display them. 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t=e.model,a=ue(n.useState({}),2),o=a[0],i=a[1],l=ue(n.useState({}),2),c=l[0],d=l[1],m=ue(n.useState(!0),2),p=m[0],f=m[1],g=ue(n.useState(0),2),h=g[0],y=g[1],v=zt(),b=u.getSession(t),E=s.getEnv(b).pluginManager;function k(e){i(e),d(e.configSchema.create({connectionId:"".concat(e.name,"-").concat(Date.now())},s.getEnv(t)))}function C(){var e;h===Gt.length-1?(e=b.addConnectionConf(c),b.makeConnection(e),b.hideWidget(t)):y(h+1)}function T(){y(h-1)}return r.createElement("div",{className:v.root},r.createElement(V,{className:v.stepper,activeStep:h,orientation:"vertical"},Gt.map((function(e){return r.createElement(z,{key:e},r.createElement(J,null,e),r.createElement(G,null,function(){switch(h){case 0:return r.createElement(Ht,{connectionTypeChoices:E.getElementTypesInGroup("connection"),connectionType:o,setConnectionType:k});case 1:return r.createElement(qt,{connectionType:o,model:c,setModelReady:f});default:return r.createElement(Y,null,"Unknown 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").concat(n))})))):null,r.createElement(g.DialogContentText,null,"Are you sure you want to close this connection?")),r.createElement(g.DialogActions,null,r.createElement(g.Button,{onClick:function(){a()},color:"primary"},"Cancel"),r.createElement(g.Button,{variant:"contained",onClick:n?function(){i&&i(),a()}:function(){},color:"primary"},"OK")))}var Kt={__proto__:null,default:f.observer(Yt)};function Qt(e){var t=e.deleteDialogDetails,n=e.session,a=e.handleClose,o=t.connectionConf;return r.createElement(g.Dialog,{open:!0},r.createElement(g.DialogTitle,null,'Delete connection "',t.name,'"'),r.createElement(g.DialogContent,null,r.createElement(g.DialogContentText,null,"Are you sure you want to delete this connection?")),r.createElement(g.DialogActions,null,r.createElement(g.Button,{onClick:function(){return a()},color:"primary"},"Cancel"),r.createElement(g.Button,{variant:"contained",color:"primary",onClick:function(){var e;o&&(null===(e=n.deleteConnection)||void 0===e||e.call(n,o)),a()}},"OK")))}var Xt={__proto__:null,default:f.observer(Qt)},$t=g.makeStyles((function(e){return{closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1),color:e.palette.grey[500]},connectionContainer:{margin:e.spacing(4),width:500}}}));function Zt(e){var t=e.session,n=e.handleClose,a=e.breakConnection,o=$t(),i=t.adminMode,l=t.connections,u=t.sessionConnections;return r.createElement(g.Dialog,{open:!0,onClose:n,maxWidth:"lg"},r.createElement(g.DialogTitle,null,"Delete connections",r.createElement(g.IconButton,{className:o.closeButton,onClick:function(){return n()}},r.createElement(b,null))),r.createElement(g.DialogContent,null,r.createElement(g.Typography,null,"Click the X icon to delete the connection from your config completely"),r.createElement("div",{className:o.connectionContainer},l.map((function(e){var t=c.readConfObject(e,"name");return r.createElement("div",{key:"conn-".concat(t)},r.createElement(g.Typography,null,i||null!=u&&u.includes(e)?r.createElement(g.IconButton,{onClick:function(){return a(e,!0)}},r.createElement(b,{color:"error"})):r.createElement(g.Tooltip,{title:"Unable to delete connection in config file as non-admin user"},r.createElement(g.IconButton,null,r.createElement(b,{color:"disabled"}))),t))})),l.length?null:r.createElement(g.Typography,null,"No connections found"))),r.createElement(g.DialogActions,null,r.createElement(g.Button,{onClick:function(){return n()},variant:"contained",color:"primary"},"Close")))}var en={__proto__:null,default:f.observer(Zt)},tn=g.makeStyles((function(e){return{closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1),color:e.palette.grey[500]},connectionContainer:{width:500,margin:e.spacing(4)}}}));function nn(e){var t=e.session,n=e.handleClose,a=e.assemblyName,o=e.breakConnection,i=tn(),l=t.connectionInstances,u=t.connections.filter((function(e){var t=c.readConfObject(e,"assemblyNames");return 0===t.length||t.includes(a)}));return r.createElement(g.Dialog,{open:!0,onClose:n,maxWidth:"lg"},r.createElement(g.DialogTitle,null,"Turn on/off connections",r.createElement(g.IconButton,{className:i.closeButton,onClick:function(){return n()}},r.createElement(b,null))),r.createElement(g.DialogContent,null,r.createElement(g.Typography,null,"Use the checkbox to turn on/off connections"),r.createElement("div",{className:i.connectionContainer},u.map((function(e){var n=c.readConfObject(e,"name");return r.createElement("div",{key:e.connectionId},r.createElement(g.FormControlLabel,{control:r.createElement(g.Checkbox,{checked:!(null==l||!l.find((function(e){return n===e.name}))),onChange:function(){var n;null!=l&&l.find((function(t){return t.name===c.readConfObject(e,"name")}))?o(e):null===(n=t.makeConnection)||void 0===n||n.call(t,e)},color:"primary"}),label:n}))})),u.length?null:r.createElement(g.Typography,null,"No connections found for ",a))),r.createElement(g.DialogActions,null,r.createElement(g.Button,{onClick:function(){return n()},variant:"contained",color:"primary"},"Close")))}var rn={__proto__:null,default:f.observer(nn)};exports.AssemblyManager=et,exports.SetDefaultSession=Ze,exports.default=tt;
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