@jbrowse/plugin-data-management 1.5.0 → 1.5.4

package/dist/AddTrackWidget/model.d.ts

@@ -23,440 +23,7 @@ export default function f(pluginManager: PluginManager): import("mobx-state-tree
     setTrackType(str: string): void;
     clearData(): void;
 } & {
-    readonly trackAdapter: {
-        type: string;
-        bamLocation: FileLocation;
-        index: {
-            location: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-                uri: string;
-                locationType: string;
-                localPath?: undefined;
-            } | {
-                localPath: string;
-                locationType: string;
-                uri?: undefined;
-            };
-            indexType: string;
-        };
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        cramLocation: FileLocation;
-        craiLocation: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-            uri: string;
-            locationType: string;
-            localPath?: undefined;
-        } | {
-            localPath: string;
-            locationType: string;
-            uri?: undefined;
-        };
-        bamLocation?: undefined;
-        index?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        gffLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        gffGzLocation: FileLocation;
-        index: {
-            location: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-                uri: string;
-                locationType: string;
-                localPath?: undefined;
-            } | {
-                localPath: string;
-                locationType: string;
-                uri?: undefined;
-            };
-            indexType: string;
-        };
-        bamLocation?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        vcfLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        vcfGzLocation: FileLocation;
-        index: {
-            location: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-                uri: string;
-                locationType: string;
-                localPath?: undefined;
-            } | {
-                localPath: string;
-                locationType: string;
-                uri?: undefined;
-            };
-            indexType: string;
-        };
-        bamLocation?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        bedGzLocation: FileLocation;
-        index: {
-            location: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-                uri: string;
-                locationType: string;
-                localPath?: undefined;
-            } | {
-                localPath: string;
-                locationType: string;
-                uri?: undefined;
-            };
-            indexType: string;
-        };
-        bamLocation?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        bigBedLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        bigWigLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        fastaLocation: FileLocation;
-        faiLocation: import("@jbrowse/core/util/types").LocalPathLocation | import("@jbrowse/core/util/types").UriLocation | import("@jbrowse/core/util/types").BlobLocation | {
-            uri: string;
-            locationType: string;
-            localPath?: undefined;
-        } | {
-            localPath: string;
-            locationType: string;
-            uri?: undefined;
-        };
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        fastaLocation: FileLocation;
-        faiLocation: import("@jbrowse/core/util/types").BlobLocation | {
-            uri: string;
-            locationType: string;
-            localPath?: undefined;
-        } | {
-            localPath: string;
-            locationType: string;
-            uri?: undefined;
-        };
-        gziLocation: import("@jbrowse/core/util/types").BlobLocation | {
-            uri: string;
-            locationType: string;
-            localPath?: undefined;
-        } | {
-            localPath: string;
-            locationType: string;
-            uri?: undefined;
-        };
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        twoBitLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        rootUrlTemplate: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        endpoint: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        hicLocation?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        hicLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        pafLocation?: undefined;
-    } | {
-        type: string;
-        pafLocation: FileLocation;
-        bamLocation?: undefined;
-        index?: undefined;
-        cramLocation?: undefined;
-        craiLocation?: undefined;
-        gffLocation?: undefined;
-        gffGzLocation?: undefined;
-        vcfLocation?: undefined;
-        vcfGzLocation?: undefined;
-        bedGzLocation?: undefined;
-        bigBedLocation?: undefined;
-        bigWigLocation?: undefined;
-        fastaLocation?: undefined;
-        faiLocation?: undefined;
-        gziLocation?: undefined;
-        twoBitLocation?: undefined;
-        rootUrlTemplate?: undefined;
-        endpoint?: undefined;
-        hicLocation?: undefined;
-    } | undefined;
+    readonly trackAdapter: import("@jbrowse/core/util/tracks").AdapterConfig | undefined;
     readonly trackName: string;
     readonly isFtp: boolean;
     readonly isRelativeTrackUrl: boolean;

package/dist/AssemblyManager/AssemblyTable.d.ts

@@ -1,7 +1,13 @@
 /// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
 declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }: {
-    rootModel: any;
+    rootModel: {
+        jbrowse: {
+            removeAssemblyConf: (arg: string) => void;
+            assemblies: AnyConfigurationModel[];
+        };
+    };
     setIsAssemblyBeingEdited(arg: boolean): void;
-    setAssemblyBeingEdited(arg: any): void;
+    setAssemblyBeingEdited(arg: AnyConfigurationModel): void;
 }) => JSX.Element;
 export default AssemblyTable;

package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts

@@ -2,7 +2,7 @@
 import { PluginStoreModel } from '../model';
 declare function CustomPluginForm({ open, onClose, model, }: {
     open: boolean;
-    onClose: Function;
+    onClose(): void;
     model: PluginStoreModel;
 }): JSX.Element;
 declare const _default: typeof CustomPluginForm;

package/dist/PluginStoreWidget/components/PluginCard.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
-import type { JBrowsePlugin } from '@jbrowse/core/util/types';
-import type { PluginStoreModel } from '../model';
+import { JBrowsePlugin } from '@jbrowse/core/util/types';
+import { PluginStoreModel } from '../model';
 declare function PluginCard({ plugin, model, adminMode, }: {
     plugin: JBrowsePlugin;
     model: PluginStoreModel;

package/dist/SetDefaultSession/SetDefaultSession.d.ts

@@ -1,8 +1,6 @@
 /// <reference types="react" />
-declare const SetDefaultSession: ({ rootModel, open, onClose, currentDefault, }: {
-    rootModel: any;
-    open: boolean;
-    onClose: Function;
-    currentDefault: string;
-}) => JSX.Element;
+declare const SetDefaultSession: ({ rootModel, onClose }: {
+    rootModel?: unknown;
+    onClose: () => void;
+}) => JSX.Element | null;
 export default SetDefaultSession;

package/dist/index.d.ts

@@ -1,12 +1,10 @@
 /// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, open, onClose, currentDefault, }: {
-    rootModel: any;
-    open: boolean;
-    onClose: Function;
-    currentDefault: string;
-}) => JSX.Element>;
+declare const SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, onClose }: {
+    rootModel?: unknown;
+    onClose: () => void;
+}) => JSX.Element | null>;
 declare const AssemblyManager: import("react").LazyExoticComponent<({ rootModel, onClose, }: {
     rootModel: any;
     onClose: (arg: boolean) => void;
@@ -18,12 +16,10 @@ export default class extends Plugin {
             rootModel: any;
             onClose: (arg: boolean) => void;
         }) => JSX.Element>;
-        SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, open, onClose, currentDefault, }: {
-            rootModel: any;
-            open: boolean;
-            onClose: Function;
-            currentDefault: string;
-        }) => JSX.Element>;
+        SetDefaultSession: import("react").LazyExoticComponent<({ rootModel, onClose }: {
+            rootModel?: unknown;
+            onClose: () => void;
+        }) => JSX.Element | null>;
     };
     install(pluginManager: PluginManager): void;
     configure(pluginManager: PluginManager): void;