@jbrowse/plugin-data-management 1.4.1 → 1.5.2

package/dist/plugin-data-management.cjs.production.min.js

@@ -1,2 +1,2 @@
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r.createElement(Ct,{overrideDimensions:o},r.createElement(xt,{model:t,toolbarHeight:a,overrideDimensions:o}),r.createElement(g.Fab,{color:"secondary",className:i.fab,onClick:function(e){d(e.currentTarget)}},r.createElement(w,null)),r.createElement(g.Menu,{anchorEl:s,open:Boolean(s),onClose:function(){return d(null)}},r.createElement(g.MenuItem,{onClick:function(){m();var e=l.addWidget("AddConnectionWidget","addConnectionWidget");l.showWidget(e)}},"Add connection"),r.createElement(g.MenuItem,{onClick:function(){m();var e=l.addWidget("AddTrackWidget","addTrackWidget",{view:t.view.id});l.showWidget(e)}},"Add track")))})),wt=f.observer((function(e){var t=e.model,a=e.setHeaderHeight,o=e.setAssemblyIdx,i=e.assemblyIdx,l=yt(),s=u.getSession(t),d=ue(n.useState(),2),m=d[0],p=d[1],f=ue(n.useState(),2),h=f[0],v=f[1],b=ue(n.useState(),2),E=b[0],k=b[1],C=ue(n.useState(),2),T=C[0],w=C[1],x=ue(n.useState(!1),2),S=x[0],L=x[1],N=ue(n.useState(!1),2),A=N[0],D=N[1],I=t.assemblyNames,B=I[i];function 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d?r.createElement(r.Fragment,null,r.createElement(wt,{model:t,setHeaderHeight:u[1],setAssemblyIdx:c,assemblyIdx:l}),r.createElement(kt,{tree:t.hierarchy(d),model:t,offset:o+s})):null})),St={__proto__:null,default:Tt},Lt=g.makeStyles((function(e){return{spacing:{marginBottom:e.spacing(3)}}}));function Nt(e){var t,n=e.trackAdapter,a=e.trackType,o=Lt();return"SNPCoverageAdapter"===n.type?r.createElement(g.Typography,{className:o.spacing},"Selected ",r.createElement("code",null,a),". 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n.useEffect((function(){a.name||o(t[0])})),a.name?r.createElement("form",{autoComplete:"off"},r.createElement(Q,{value:a.name,label:"connectionType",helperText:a.description?r.createElement(r.Fragment,null,a.description,a.url?r.createElement(L,{href:a.url,rel:"noopener noreferrer",target:"_blank",color:"secondary"},r.createElement(X,null)):null):null,select:!0,fullWidth:!0,onChange:function(e){o(t.find((function(t){return t.name===e.target.value})))},variant:"outlined"},t.map((function(e){return r.createElement(K,{key:e.name,value:e.name},e.displayName||e.name)})))):null}var zt=b.makeStyles((function(e){return{root:{marginTop:e.spacing(1)},stepper:{backgroundColor:e.palette.background.default},button:{marginTop:e.spacing(1),marginRight:e.spacing(1)},actionsContainer:{marginBottom:e.spacing(2)}}})),Gt=["Select a Connection Type","Configure Connection"];function Jt(e){var t=e.model,a=ue(n.useState({}),2),o=a[0],i=a[1],l=ue(n.useState({}),2),c=l[0],d=l[1],m=ue(n.useState(!0),2),p=m[0],f=m[1],g=ue(n.useState(0),2),h=g[0],y=g[1],v=zt(),b=u.getSession(t),E=s.getEnv(b).pluginManager;function k(e){i(e),d(e.configSchema.create({connectionId:"".concat(e.name,"-").concat(Date.now())},s.getEnv(t)))}function C(){var e;h===Gt.length-1?(e=b.addConnectionConf(c),b.makeConnection(e),b.hideWidget(t)):y(h+1)}function T(){y(h-1)}return r.createElement("div",{className:v.root},r.createElement(V,{className:v.stepper,activeStep:h,orientation:"vertical"},Gt.map((function(e){return r.createElement(z,{key:e},r.createElement(J,null,e),r.createElement(G,null,function(){switch(h){case 0:return r.createElement(Ht,{connectionTypeChoices:E.getElementTypesInGroup("connection"),connectionType:o,setConnectionType:k});case 1:return r.createElement(qt,{connectionType:o,model:c,setModelReady:f});default:return r.createElement(Y,null,"Unknown 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r.createElement("div",{key:"conn-".concat(t)},r.createElement(g.Typography,null,i||null!=u&&u.includes(e)?r.createElement(g.IconButton,{onClick:function(){return a(e,!0)}},r.createElement(E,{color:"error"})):r.createElement(g.Tooltip,{title:"Unable to delete connection in config file as non-admin user"},r.createElement(g.IconButton,null,r.createElement(E,{color:"disabled"}))),t))})),l.length?null:r.createElement(g.Typography,null,"No connections found"))),r.createElement(g.DialogActions,null,r.createElement(g.Button,{onClick:function(){return n()},variant:"contained",color:"primary"},"Close")))}var en={__proto__:null,default:f.observer(Zt)},tn=g.makeStyles((function(e){return{closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1),color:e.palette.grey[500]},connectionContainer:{width:500,margin:e.spacing(4)}}}));function nn(e){var t=e.session,n=e.handleClose,a=e.assemblyName,o=e.breakConnection,i=tn(),l=t.connectionInstances,u=t.connections.filter((function(e){var t=c.readConfObject(e,"assemblyNames");return 0===t.length||t.includes(a)}));return r.createElement(g.Dialog,{open:!0,onClose:n,maxWidth:"lg"},r.createElement(g.DialogTitle,null,"Turn on/off connections",r.createElement(g.IconButton,{className:i.closeButton,onClick:function(){return n()}},r.createElement(E,null))),r.createElement(g.DialogContent,null,r.createElement(g.Typography,null,"Use the checkbox to turn on/off connections"),r.createElement("div",{className:i.connectionContainer},u.map((function(e){var n=c.readConfObject(e,"name");return r.createElement("div",{key:e.connectionId},r.createElement(g.FormControlLabel,{control:r.createElement(g.Checkbox,{checked:!(null==l||!l.find((function(e){return n===e.name}))),onChange:function(){var n;null!=l&&l.find((function(t){return t.name===c.readConfObject(e,"name")}))?o(e):null===(n=t.makeConnection)||void 0===n||n.call(t,e)},color:"primary"}),label:n}))})),u.length?null:r.createElement(g.Typography,null,"No connections found for 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