@jbrowse/plugin-data-management 1.4.1 → 1.5.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (37) hide show
  1. package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts +2 -1
  2. package/dist/AddTrackWidget/model.d.ts +1 -363
  3. package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +1 -1
  4. package/dist/PluginStoreWidget/components/PluginCard.d.ts +2 -2
  5. package/dist/SetDefaultSession/SetDefaultSession.d.ts +4 -6
  6. package/dist/index.d.ts +8 -12
  7. package/dist/plugin-data-management.cjs.development.js +627 -501
  8. package/dist/plugin-data-management.cjs.development.js.map +1 -1
  9. package/dist/plugin-data-management.cjs.production.min.js +1 -1
  10. package/dist/plugin-data-management.cjs.production.min.js.map +1 -1
  11. package/dist/plugin-data-management.esm.js +614 -507
  12. package/dist/plugin-data-management.esm.js.map +1 -1
  13. package/package.json +3 -2
  14. package/src/AddConnectionWidget/components/AddConnectionWidget.test.js +3 -8
  15. package/src/AddTrackWidget/components/AddTrackWidget.test.js +2 -3
  16. package/src/AddTrackWidget/components/AddTrackWidget.tsx +4 -2
  17. package/src/AddTrackWidget/components/ConfirmTrack.tsx +160 -88
  18. package/src/AddTrackWidget/components/TrackSourceSelect.tsx +30 -23
  19. package/src/AddTrackWidget/components/__snapshots__/AddTrackWidget.test.js.snap +157 -124
  20. package/src/AddTrackWidget/index.test.jsx +78 -26
  21. package/src/AddTrackWidget/model.ts +5 -14
  22. package/src/AssemblyManager/AssemblyAddForm.tsx +7 -6
  23. package/src/AssemblyManager/AssemblyManager.test.tsx +1 -0
  24. package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +27 -17
  25. package/src/HierarchicalTrackSelectorWidget/model.js +3 -2
  26. package/src/PluginStoreWidget/components/CustomPluginForm.tsx +164 -56
  27. package/src/PluginStoreWidget/components/InstalledPlugin.tsx +10 -2
  28. package/src/PluginStoreWidget/components/PluginCard.tsx +7 -9
  29. package/src/PluginStoreWidget/components/PluginStoreWidget.test.js +9 -10
  30. package/src/PluginStoreWidget/components/PluginStoreWidget.tsx +36 -26
  31. package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.js.snap +89 -51
  32. package/src/SetDefaultSession/SetDefaultSession.test.tsx +7 -81
  33. package/src/SetDefaultSession/SetDefaultSession.tsx +51 -162
  34. package/src/index.ts +1 -51
  35. package/src/ucsc-trackhub/configSchema.js +4 -1
  36. package/src/ucsc-trackhub/model.js +31 -31
  37. package/src/ucsc-trackhub/ucscTrackHub.js +40 -12
package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.js.snap CHANGED
@@ -1,9 +1,11 @@
1
1
  // Jest Snapshot v1, https://goo.gl/fbAQLP
2
2
 
3
3
  exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
4
- <div>
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+ <div
5
+ class="makeStyles-root"
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+ >
5
7
  <div
6
- class="MuiFormControl-root MuiTextField-root makeStyles-searchBox MuiFormControl-fullWidth"
8
+ class="MuiFormControl-root MuiTextField-root MuiFormControl-fullWidth"
7
9
  >
8
10
  <label
9
11
  class="MuiFormLabel-root MuiInputLabel-root MuiInputLabel-formControl MuiInputLabel-animated"
@@ -116,9 +118,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
116
118
  >
117
119
  <svg
118
120
  aria-hidden="true"
119
- class="MuiSvgIcon-root"
121
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
120
122
  focusable="false"
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- style="margin-right: 0.5rem;"
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  title="This plugin was installed by an administrator, you cannot remove it."
123
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  viewBox="0 0 24 24"
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  >
@@ -137,9 +138,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
137
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  >
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  <svg
139
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  aria-hidden="true"
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- class="MuiSvgIcon-root"
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+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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  focusable="false"
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- style="margin-right: 0.5rem;"
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  title="This plugin was installed by an administrator, you cannot remove it."
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  viewBox="0 0 24 24"
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  >
@@ -158,9 +158,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
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  >
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  <svg
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  aria-hidden="true"
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- class="MuiSvgIcon-root"
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+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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  focusable="false"
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- style="margin-right: 0.5rem;"
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  title="This plugin was installed by an administrator, you cannot remove it."
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  viewBox="0 0 24 24"
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  >
@@ -179,9 +178,28 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
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  >
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  <svg
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  aria-hidden="true"
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- class="MuiSvgIcon-root"
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+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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+ focusable="false"
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+ title="This plugin was installed by an administrator, you cannot remove it."
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+ viewBox="0 0 24 24"
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+ >
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+ <path
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+ d="M18 8h-1V6c0-2.76-2.24-5-5-5S7 3.24 7 6v2H6c-1.1 0-2 .9-2 2v10c0 1.1.9 2 2 2h12c1.1 0 2-.9 2-2V10c0-1.1-.9-2-2-2zm-6 9c-1.1 0-2-.9-2-2s.9-2 2-2 2 .9 2 2-.9 2-2 2zm3.1-9H8.9V6c0-1.71 1.39-3.1 3.1-3.1 1.71 0 3.1 1.39 3.1 3.1v2z"
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+ />
189
+ </svg>
190
+ <p
191
+ class="MuiTypography-root MuiTypography-body1"
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+ >
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+ AuthenticationPlugin
194
+ </p>
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+ </li>
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+ <li
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+ class="MuiListItem-root MuiListItem-gutters"
198
+ >
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+ <svg
200
+ aria-hidden="true"
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+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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  focusable="false"
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- style="margin-right: 0.5rem;"
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  title="This plugin was installed by an administrator, you cannot remove it."
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  viewBox="0 0 24 24"
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  >
@@ -200,9 +218,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
200
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  >
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  <svg
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  aria-hidden="true"
203
- class="MuiSvgIcon-root"
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+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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222
  focusable="false"
205
- style="margin-right: 0.5rem;"
206
223
  title="This plugin was installed by an administrator, you cannot remove it."
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  viewBox="0 0 24 24"
208
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  >
@@ -221,9 +238,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
221
238
  >
222
239
  <svg
223
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  aria-hidden="true"
224
- class="MuiSvgIcon-root"
241
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
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  focusable="false"
226
- style="margin-right: 0.5rem;"
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  title="This plugin was installed by an administrator, you cannot remove it."
228
244
  viewBox="0 0 24 24"
229
245
  >
@@ -242,9 +258,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
242
258
  >
243
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  <svg
244
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  aria-hidden="true"
245
- class="MuiSvgIcon-root"
261
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
246
262
  focusable="false"
247
- style="margin-right: 0.5rem;"
248
263
  title="This plugin was installed by an administrator, you cannot remove it."
249
264
  viewBox="0 0 24 24"
250
265
  >
@@ -263,9 +278,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
263
278
  >
264
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  <svg
265
280
  aria-hidden="true"
266
- class="MuiSvgIcon-root"
281
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
267
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  focusable="false"
268
- style="margin-right: 0.5rem;"
269
283
  title="This plugin was installed by an administrator, you cannot remove it."
270
284
  viewBox="0 0 24 24"
271
285
  >
@@ -284,9 +298,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
284
298
  >
285
299
  <svg
286
300
  aria-hidden="true"
287
- class="MuiSvgIcon-root"
301
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
288
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  focusable="false"
289
- style="margin-right: 0.5rem;"
290
303
  title="This plugin was installed by an administrator, you cannot remove it."
291
304
  viewBox="0 0 24 24"
292
305
  >
@@ -297,7 +310,7 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
297
310
  <p
298
311
  class="MuiTypography-root MuiTypography-body1"
299
312
  >
300
- GFF3TabixPlugin
313
+ GTFPlugin
301
314
  </p>
302
315
  </li>
303
316
  <li
@@ -305,9 +318,28 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
305
318
  >
306
319
  <svg
307
320
  aria-hidden="true"
308
- class="MuiSvgIcon-root"
321
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
322
+ focusable="false"
323
+ title="This plugin was installed by an administrator, you cannot remove it."
324
+ viewBox="0 0 24 24"
325
+ >
326
+ <path
327
+ d="M18 8h-1V6c0-2.76-2.24-5-5-5S7 3.24 7 6v2H6c-1.1 0-2 .9-2 2v10c0 1.1.9 2 2 2h12c1.1 0 2-.9 2-2V10c0-1.1-.9-2-2-2zm-6 9c-1.1 0-2-.9-2-2s.9-2 2-2 2 .9 2 2-.9 2-2 2zm3.1-9H8.9V6c0-1.71 1.39-3.1 3.1-3.1 1.71 0 3.1 1.39 3.1 3.1v2z"
328
+ />
329
+ </svg>
330
+ <p
331
+ class="MuiTypography-root MuiTypography-body1"
332
+ >
333
+ GFF3Plugin
334
+ </p>
335
+ </li>
336
+ <li
337
+ class="MuiListItem-root MuiListItem-gutters"
338
+ >
339
+ <svg
340
+ aria-hidden="true"
341
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
309
342
  focusable="false"
310
- style="margin-right: 0.5rem;"
311
343
  title="This plugin was installed by an administrator, you cannot remove it."
312
344
  viewBox="0 0 24 24"
313
345
  >
@@ -326,9 +358,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
326
358
  >
327
359
  <svg
328
360
  aria-hidden="true"
329
- class="MuiSvgIcon-root"
361
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
330
362
  focusable="false"
331
- style="margin-right: 0.5rem;"
332
363
  title="This plugin was installed by an administrator, you cannot remove it."
333
364
  viewBox="0 0 24 24"
334
365
  >
@@ -347,9 +378,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
347
378
  >
348
379
  <svg
349
380
  aria-hidden="true"
350
- class="MuiSvgIcon-root"
381
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
351
382
  focusable="false"
352
- style="margin-right: 0.5rem;"
353
383
  title="This plugin was installed by an administrator, you cannot remove it."
354
384
  viewBox="0 0 24 24"
355
385
  >
@@ -368,9 +398,28 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
368
398
  >
369
399
  <svg
370
400
  aria-hidden="true"
371
- class="MuiSvgIcon-root"
401
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
402
+ focusable="false"
403
+ title="This plugin was installed by an administrator, you cannot remove it."
404
+ viewBox="0 0 24 24"
405
+ >
406
+ <path
407
+ d="M18 8h-1V6c0-2.76-2.24-5-5-5S7 3.24 7 6v2H6c-1.1 0-2 .9-2 2v10c0 1.1.9 2 2 2h12c1.1 0 2-.9 2-2V10c0-1.1-.9-2-2-2zm-6 9c-1.1 0-2-.9-2-2s.9-2 2-2 2 .9 2 2-.9 2-2 2zm3.1-9H8.9V6c0-1.71 1.39-3.1 3.1-3.1 1.71 0 3.1 1.39 3.1 3.1v2z"
408
+ />
409
+ </svg>
410
+ <p
411
+ class="MuiTypography-root MuiTypography-body1"
412
+ >
413
+ ArcRenderer
414
+ </p>
415
+ </li>
416
+ <li
417
+ class="MuiListItem-root MuiListItem-gutters"
418
+ >
419
+ <svg
420
+ aria-hidden="true"
421
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
372
422
  focusable="false"
373
- style="margin-right: 0.5rem;"
374
423
  title="This plugin was installed by an administrator, you cannot remove it."
375
424
  viewBox="0 0 24 24"
376
425
  >
@@ -389,9 +438,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
389
438
  >
390
439
  <svg
391
440
  aria-hidden="true"
392
- class="MuiSvgIcon-root"
441
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
393
442
  focusable="false"
394
- style="margin-right: 0.5rem;"
395
443
  title="This plugin was installed by an administrator, you cannot remove it."
396
444
  viewBox="0 0 24 24"
397
445
  >
@@ -410,9 +458,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
410
458
  >
411
459
  <svg
412
460
  aria-hidden="true"
413
- class="MuiSvgIcon-root"
461
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
414
462
  focusable="false"
415
- style="margin-right: 0.5rem;"
416
463
  title="This plugin was installed by an administrator, you cannot remove it."
417
464
  viewBox="0 0 24 24"
418
465
  >
@@ -431,9 +478,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
431
478
  >
432
479
  <svg
433
480
  aria-hidden="true"
434
- class="MuiSvgIcon-root"
481
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
435
482
  focusable="false"
436
- style="margin-right: 0.5rem;"
437
483
  title="This plugin was installed by an administrator, you cannot remove it."
438
484
  viewBox="0 0 24 24"
439
485
  >
@@ -452,9 +498,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
452
498
  >
453
499
  <svg
454
500
  aria-hidden="true"
455
- class="MuiSvgIcon-root"
501
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
456
502
  focusable="false"
457
- style="margin-right: 0.5rem;"
458
503
  title="This plugin was installed by an administrator, you cannot remove it."
459
504
  viewBox="0 0 24 24"
460
505
  >
@@ -473,9 +518,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
473
518
  >
474
519
  <svg
475
520
  aria-hidden="true"
476
- class="MuiSvgIcon-root"
521
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
477
522
  focusable="false"
478
- style="margin-right: 0.5rem;"
479
523
  title="This plugin was installed by an administrator, you cannot remove it."
480
524
  viewBox="0 0 24 24"
481
525
  >
@@ -494,9 +538,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
494
538
  >
495
539
  <svg
496
540
  aria-hidden="true"
497
- class="MuiSvgIcon-root"
541
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
498
542
  focusable="false"
499
- style="margin-right: 0.5rem;"
500
543
  title="This plugin was installed by an administrator, you cannot remove it."
501
544
  viewBox="0 0 24 24"
502
545
  >
@@ -515,9 +558,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
515
558
  >
516
559
  <svg
517
560
  aria-hidden="true"
518
- class="MuiSvgIcon-root"
561
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
519
562
  focusable="false"
520
- style="margin-right: 0.5rem;"
521
563
  title="This plugin was installed by an administrator, you cannot remove it."
522
564
  viewBox="0 0 24 24"
523
565
  >
@@ -536,9 +578,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
536
578
  >
537
579
  <svg
538
580
  aria-hidden="true"
539
- class="MuiSvgIcon-root"
581
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
540
582
  focusable="false"
541
- style="margin-right: 0.5rem;"
542
583
  title="This plugin was installed by an administrator, you cannot remove it."
543
584
  viewBox="0 0 24 24"
544
585
  >
@@ -557,9 +598,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
557
598
  >
558
599
  <svg
559
600
  aria-hidden="true"
560
- class="MuiSvgIcon-root"
601
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
561
602
  focusable="false"
562
- style="margin-right: 0.5rem;"
563
603
  title="This plugin was installed by an administrator, you cannot remove it."
564
604
  viewBox="0 0 24 24"
565
605
  >
@@ -578,9 +618,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
578
618
  >
579
619
  <svg
580
620
  aria-hidden="true"
581
- class="MuiSvgIcon-root"
621
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
582
622
  focusable="false"
583
- style="margin-right: 0.5rem;"
584
623
  title="This plugin was installed by an administrator, you cannot remove it."
585
624
  viewBox="0 0 24 24"
586
625
  >
@@ -599,9 +638,8 @@ exports[`<PluginStoreWidget /> renders with the available plugins 1`] = `
599
638
  >
600
639
  <svg
601
640
  aria-hidden="true"
602
- class="MuiSvgIcon-root"
641
+ class="MuiSvgIcon-root makeStyles-lockedPluginTooltip"
603
642
  focusable="false"
604
- style="margin-right: 0.5rem;"
605
643
  title="This plugin was installed by an administrator, you cannot remove it."
606
644
  viewBox="0 0 24 24"
607
645
  >
package/src/SetDefaultSession/SetDefaultSession.test.tsx CHANGED
@@ -14,6 +14,7 @@ const mockRootModel = {
14
14
  type: 'testSeqAdapter',
15
15
  twoBitLocation: {
16
16
  uri: 'test.2bit',
17
+ locationType: 'UriLocation',
17
18
  },
18
19
  },
19
20
  },
@@ -22,108 +23,33 @@ const mockRootModel = {
22
23
  setDefaultSessionConf: jest.fn(),
23
24
  },
24
25
  session: {
25
- savedSessions: {},
26
+ savedSessions: [],
27
+ notify: jest.fn(),
26
28
  },
27
29
  }
28
30
 
29
31
  describe('SetDefaultSession GUI', () => {
30
- it('renders succesfully', () => {
31
- const { getByText } = render(
32
- <SetDefaultSession
33
- rootModel={mockRootModel}
34
- open
35
- onClose={() => {}}
36
- currentDefault="New session"
37
- />,
38
- )
39
- expect(getByText('Set Default Session')).toBeTruthy()
40
- })
41
-
42
32
  it('closes when the return button is clicked', () => {
43
33
  const onClose = jest.fn()
44
34
  const { getByText } = render(
45
- <SetDefaultSession
46
- rootModel={mockRootModel}
47
- open
48
- onClose={onClose}
49
- currentDefault="New session"
50
- />,
35
+ <SetDefaultSession rootModel={mockRootModel} onClose={onClose} />,
51
36
  )
52
- fireEvent.click(getByText('Return'))
37
+ fireEvent.click(getByText('Cancel'))
53
38
  expect(onClose).toHaveBeenCalled()
54
39
  })
55
40
 
56
- it('shows no sessions if none are saved', () => {
57
- const { getByText } = render(
58
- <SetDefaultSession
59
- rootModel={mockRootModel}
60
- open
61
- onClose={() => {}}
62
- currentDefault="New session"
63
- />,
64
- )
65
- expect(getByText('No saved sessions found')).toBeTruthy()
66
- })
67
-
68
- it('lists the saved sessions', () => {
69
- const MockSavedSessions = {
70
- ...mockRootModel,
71
- session: {
72
- savedSessions: [
73
- {
74
- name: `New session`,
75
- },
76
- ],
77
- },
78
- }
79
- const { getByText } = render(
80
- <SetDefaultSession
81
- rootModel={MockSavedSessions}
82
- open
83
- onClose={() => {}}
84
- currentDefault="New session"
85
- />,
86
- )
87
- expect(getByText('New session')).toBeTruthy()
88
- })
89
-
90
- it('sets to the default session when checked', () => {
91
- const MockSession = {
92
- ...mockRootModel,
93
- session: {
94
- name: `Moo session`,
95
- savedSessions: [],
96
- notify: jest.fn(),
97
- },
98
- }
99
- const { getByRole } = render(
100
- <SetDefaultSession
101
- rootModel={MockSession}
102
- open
103
- onClose={() => {}}
104
- currentDefault="New session"
105
- />,
106
- )
107
- fireEvent.click(getByRole('radio'))
108
- expect(MockSession.jbrowse.setDefaultSessionConf).toHaveBeenCalled()
109
- })
110
-
111
41
  it('unsets to the default session with reset button', () => {
112
42
  const MockSession = {
113
43
  ...mockRootModel,
114
44
  session: {
45
+ ...mockRootModel.session,
115
46
  name: `Moo session`,
116
47
  savedSessions: [],
117
48
  notify: jest.fn(),
118
49
  },
119
50
  }
120
51
  const { getByText } = render(
121
- <SetDefaultSession
122
- rootModel={MockSession}
123
- open
124
- onClose={() => {}}
125
- currentDefault="New session"
126
- />,
52
+ <SetDefaultSession rootModel={MockSession} onClose={() => {}} />,
127
53
  )
128
54
  fireEvent.click(getByText('Clear default session'))
129
55
  expect(MockSession.jbrowse.setDefaultSessionConf).toHaveBeenCalledWith({