@jbrowse/plugin-config 2.17.0 → 3.0.0

package/esm/ConfigurationEditorWidget/components/StringArrayEditor.js

@@ -1,47 +1,34 @@
-import React, { useState } from 'react';
-import { observer } from 'mobx-react';
-import { Button, FormHelperText, IconButton, InputAdornment, InputLabel, List, ListItem, TextField, } from '@mui/material';
-// icons
+import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
+import { useState } from 'react';
 import DeleteIcon from '@mui/icons-material/Delete';
+import { Button, FormHelperText, IconButton, InputAdornment, InputLabel, List, ListItem, TextField, } from '@mui/material';
+import { observer } from 'mobx-react';
 const StringArrayEditor = observer(function ({ slot, }) {
     const [value, setValue] = useState('');
     const [addNew, setAddNew] = useState(false);
-    return (React.createElement(React.Fragment, null,
-        slot.name ? React.createElement(InputLabel, null, slot.name) : null,
-        React.createElement(List, { disablePadding: true },
-            slot.value.map((val, idx) => (React.createElement(ListItem, { key: `${JSON.stringify(val)}-${idx}`, disableGutters: true },
-                React.createElement(TextField, { value: val, onChange: evt => {
-                        slot.setAtIndex(idx, evt.target.value);
-                    }, slotProps: {
-                        input: {
-                            endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                                React.createElement(IconButton, { onClick: () => {
-                                        slot.removeAtIndex(idx);
-                                    } },
-                                    React.createElement(DeleteIcon, null)))),
-                        },
-                    } })))),
-            addNew ? (React.createElement(ListItem, { disableGutters: true },
-                React.createElement(TextField, { value: value, placeholder: "add new", onChange: event => {
-                        setValue(event.target.value);
-                    }, slotProps: {
-                        input: {
-                            endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                                React.createElement(React.Fragment, null,
-                                    React.createElement(Button, { color: "primary", variant: "contained", style: { margin: 2 }, "data-testid": `stringArrayAdd-${slot.name}`, onClick: () => {
-                                            setAddNew(false);
-                                            slot.add(value);
-                                            setValue('');
-                                        } }, "OK"),
-                                    React.createElement(Button, { color: "primary", variant: "contained", style: { margin: 2 }, onClick: () => {
-                                            setAddNew(false);
-                                            setValue('');
-                                        } }, "Cancel")))),
-                        },
-                    } }))) : null,
-            React.createElement(Button, { color: "primary", variant: "contained", style: { margin: 4 }, disabled: addNew, onClick: () => {
-                    setAddNew(true);
-                } }, "Add item")),
-        React.createElement(FormHelperText, null, slot.description)));
+    return (_jsxs(_Fragment, { children: [slot.name ? _jsx(InputLabel, { children: slot.name }) : null, _jsxs(List, { disablePadding: true, children: [slot.value.map((val, idx) => (_jsx(ListItem, { disableGutters: true, children: _jsx(TextField, { value: val, onChange: evt => {
+                                slot.setAtIndex(idx, evt.target.value);
+                            }, slotProps: {
+                                input: {
+                                    endAdornment: (_jsx(InputAdornment, { position: "end", children: _jsx(IconButton, { onClick: () => {
+                                                slot.removeAtIndex(idx);
+                                            }, children: _jsx(DeleteIcon, {}) }) })),
+                                },
+                            } }) }, `${JSON.stringify(val)}-${idx}`))), addNew ? (_jsx(ListItem, { disableGutters: true, children: _jsx(TextField, { value: value, placeholder: "add new", onChange: event => {
+                                setValue(event.target.value);
+                            }, slotProps: {
+                                input: {
+                                    endAdornment: (_jsx(InputAdornment, { position: "end", children: _jsxs(_Fragment, { children: [_jsx(Button, { color: "primary", variant: "contained", style: { margin: 2 }, "data-testid": `stringArrayAdd-${slot.name}`, onClick: () => {
+                                                        setAddNew(false);
+                                                        slot.add(value);
+                                                        setValue('');
+                                                    }, children: "OK" }), _jsx(Button, { color: "primary", variant: "contained", style: { margin: 2 }, onClick: () => {
+                                                        setAddNew(false);
+                                                        setValue('');
+                                                    }, children: "Cancel" })] }) })),
+                                },
+                            } }) })) : null, _jsx(Button, { color: "primary", variant: "contained", style: { margin: 4 }, disabled: addNew, onClick: () => {
+                            setAddNew(true);
+                        }, children: "Add item" })] }), _jsx(FormHelperText, { children: slot.description })] }));
 });
 export default StringArrayEditor;

package/esm/ConfigurationEditorWidget/components/StringArrayMapEditor.d.ts

@@ -1,4 +1,3 @@
-import React from 'react';
 declare const StringArrayMapEditor: ({ slot, }: {
     slot: {
         name: string;
@@ -10,5 +9,5 @@ declare const StringArrayMapEditor: ({ slot, }: {
         removeAtKeyIndex: (key: string, idx: number) => void;
         addToKey: (key: string, val: string) => void;
     };
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default StringArrayMapEditor;

package/esm/ConfigurationEditorWidget/components/StringArrayMapEditor.js

@@ -1,11 +1,10 @@
-import React, { useState } from 'react';
-import { observer } from 'mobx-react';
+import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
+import { useState } from 'react';
+import AddIcon from '@mui/icons-material/Add';
+import DeleteIcon from '@mui/icons-material/Delete';
 import { Card, CardContent, CardHeader, FormHelperText, IconButton, InputAdornment, InputLabel, TextField, } from '@mui/material';
+import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
-// icons
-import DeleteIcon from '@mui/icons-material/Delete';
-import AddIcon from '@mui/icons-material/Add';
-// locals
 import StringArrayEditor from './StringArrayEditor';
 const useStyles = makeStyles()(theme => ({
     card: {
@@ -15,41 +14,30 @@ const useStyles = makeStyles()(theme => ({
 const StringArrayMapEditor = observer(function ({ slot, }) {
     const { classes } = useStyles();
     const [value, setValue] = useState('');
-    return (React.createElement(React.Fragment, null,
-        React.createElement(InputLabel, null, slot.name),
-        [...slot.value].map(([key, val]) => (React.createElement(Card, { raised: true, key: key, className: classes.card },
-            React.createElement(CardHeader, { title: key, action: React.createElement(IconButton, { onClick: () => {
-                        slot.remove(key);
-                    } },
-                    React.createElement(DeleteIcon, null)) }),
-            React.createElement(CardContent, null,
-                React.createElement(StringArrayEditor, { slot: {
-                        name: slot.name,
-                        value: val,
-                        description: `Values associated with entry ${key}`,
-                        setAtIndex: (idx, val) => {
-                            slot.setAtKeyIndex(key, idx, val);
-                        },
-                        removeAtIndex: (idx) => {
-                            slot.removeAtKeyIndex(key, idx);
-                        },
-                        add: (val) => {
-                            slot.addToKey(key, val);
-                        },
-                    } }))))),
-        React.createElement(Card, { raised: true, className: classes.card },
-            React.createElement(CardHeader, { disableTypography: true, title: React.createElement(TextField, { fullWidth: true, value: value, placeholder: "add new", onChange: event => {
-                        setValue(event.target.value);
-                    }, slotProps: {
-                        input: {
-                            endAdornment: (React.createElement(InputAdornment, { position: "end" },
-                                React.createElement(IconButton, { disabled: value === '', onClick: () => {
-                                        slot.add(value, []);
-                                        setValue('');
-                                    } },
-                                    React.createElement(AddIcon, null)))),
-                        },
-                    } }) })),
-        React.createElement(FormHelperText, null, slot.description)));
+    return (_jsxs(_Fragment, { children: [_jsx(InputLabel, { children: slot.name }), [...slot.value].map(([key, val]) => (_jsxs(Card, { raised: true, className: classes.card, children: [_jsx(CardHeader, { title: key, action: _jsx(IconButton, { onClick: () => {
+                                slot.remove(key);
+                            }, children: _jsx(DeleteIcon, {}) }) }), _jsx(CardContent, { children: _jsx(StringArrayEditor, { slot: {
+                                name: slot.name,
+                                value: val,
+                                description: `Values associated with entry ${key}`,
+                                setAtIndex: (idx, val) => {
+                                    slot.setAtKeyIndex(key, idx, val);
+                                },
+                                removeAtIndex: (idx) => {
+                                    slot.removeAtKeyIndex(key, idx);
+                                },
+                                add: (val) => {
+                                    slot.addToKey(key, val);
+                                },
+                            } }) })] }, key))), _jsx(Card, { raised: true, className: classes.card, children: _jsx(CardHeader, { disableTypography: true, title: _jsx(TextField, { fullWidth: true, value: value, placeholder: "add new", onChange: event => {
+                            setValue(event.target.value);
+                        }, slotProps: {
+                            input: {
+                                endAdornment: (_jsx(InputAdornment, { position: "end", children: _jsx(IconButton, { disabled: value === '', onClick: () => {
+                                            slot.add(value, []);
+                                            setValue('');
+                                        }, children: _jsx(AddIcon, {}) }) })),
+                            },
+                        } }) }) }), _jsx(FormHelperText, { children: slot.description })] }));
 });
 export default StringArrayMapEditor;

package/esm/ConfigurationEditorWidget/components/TypeSelector.d.ts

@@ -1,9 +1,8 @@
-import React from 'react';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const TypeSelector: ({ typeNameChoices, slot, slotName, onChange, }: {
     typeNameChoices: string[];
     slot: AnyConfigurationModel;
     slotName: string;
     onChange: (event: React.ChangeEvent<HTMLInputElement>) => void;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default TypeSelector;

package/esm/ConfigurationEditorWidget/components/TypeSelector.js

@@ -1,11 +1,9 @@
-import React from 'react';
+import { jsx as _jsx } from "react/jsx-runtime";
 import { MenuItem, Paper, TextField } from '@mui/material';
 import { observer } from 'mobx-react';
 import { useSlotEditorStyles } from './useSlotEditorStyles';
 const TypeSelector = observer(function ({ typeNameChoices, slot, slotName, onChange, }) {
     const { classes } = useSlotEditorStyles();
-    return (React.createElement(Paper, { className: classes.paper },
-        React.createElement("div", { className: classes.paperContent },
-            React.createElement(TextField, { value: slot.type, label: "Type", select: true, helperText: `Type of ${slotName} to use`, fullWidth: true, onChange: onChange }, typeNameChoices.map(str => (React.createElement(MenuItem, { key: str, value: str }, str)))))));
+    return (_jsx(Paper, { className: classes.paper, children: _jsx("div", { className: classes.paperContent, children: _jsx(TextField, { value: slot.type, label: "Type", select: true, helperText: `Type of ${slotName} to use`, fullWidth: true, onChange: onChange, children: typeNameChoices.map(str => (_jsx(MenuItem, { value: str, children: str }, str))) }) }) }));
 });
 export default TypeSelector;

package/esm/ConfigurationEditorWidget/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function registerConfigurationEditorWidget(pluginManager: PluginManager): void;

package/esm/ConfigurationEditorWidget/index.js

@@ -1,8 +1,8 @@
 import { lazy } from 'react';
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
-import stateModelFactory from './model';
 import HeadingComponent from './components/HeadingComponent';
+import stateModelFactory from './model';
 const configSchema = ConfigurationSchema('ConfigurationEditorWidget', {});
 const LazyConfigurationEditorComponent = lazy(() => import('./components/ConfigurationEditor'));
 export default function registerConfigurationEditorWidget(pluginManager) {

package/esm/ConfigurationEditorWidget/model.d.ts

@@ -1,4 +1,4 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<"ConfigurationEditorWidget">;

package/esm/ConfigurationEditorWidget/model.js

@@ -1,12 +1,10 @@
-import { types } from 'mobx-state-tree';
 import { ElementId } from '@jbrowse/core/util/types/mst';
+import { types } from 'mobx-state-tree';
 export default function stateModelFactory(pluginManager) {
     return types
         .model('ConfigurationEditorWidget', {
         id: ElementId,
         type: types.literal('ConfigurationEditorWidget'),
-        // If you add different types of targets, don't forget to account for that
-        // in the key of ./components/ConfigurationEditor.js
         target: types.safeReference(pluginManager.pluggableConfigSchemaType('track')),
     })
         .actions(self => ({

package/esm/FromConfigAdapter/FromConfigAdapter.d.ts

@@ -1,9 +1,9 @@
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
-import { NoAssemblyRegion } from '@jbrowse/core/util/types';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import type { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
+import type { NoAssemblyRegion } from '@jbrowse/core/util/types';
 export declare function makeFeatures(fdata: SimpleFeatureSerialized[]): Map<string, Feature[]>;
 export default class FromConfigAdapter extends BaseFeatureDataAdapter {
     protected features: Map<string, Feature[]>;

package/esm/FromConfigAdapter/FromConfigAdapter.js

@@ -1,7 +1,7 @@
+import { readConfObject } from '@jbrowse/core/configuration';
 import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import SimpleFeature from '@jbrowse/core/util/simpleFeature';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
-import { readConfObject, } from '@jbrowse/core/configuration';
+import SimpleFeature from '@jbrowse/core/util/simpleFeature';
 export function makeFeatures(fdata) {
     const features = new Map();
     for (const entry of fdata) {
@@ -14,7 +14,6 @@ export function makeFeatures(fdata) {
         }
         bucket.push(f);
     }
-    // sort the features on each reference sequence by start coordinate
     for (const refFeatures of features.values()) {
         refFeatures.sort((a, b) => a.get('start') - b.get('start'));
     }
@@ -47,5 +46,5 @@ export default class FromConfigAdapter extends BaseFeatureDataAdapter {
             observer.complete();
         });
     }
-    freeResources( /* { region } */) { }
+    freeResources() { }
 }

package/esm/FromConfigAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     features: {
         type: string;
         defaultValue: never[];

package/esm/FromConfigAdapter/configSchema.js

@@ -1,12 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config FromConfigAdapter
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const configSchema = ConfigurationSchema('FromConfigAdapter', {
-    /**
-     * #slot
-     */
     features: {
         type: 'frozen',
         defaultValue: [],

package/esm/FromConfigAdapter/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function FromConfigAdapterF(pluginManager: PluginManager): void;

package/esm/FromConfigRegionsAdapter/FromConfigRegionsAdapter.d.ts

@@ -1,18 +1,11 @@
-import { BaseAdapter, RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-/**
- * Adapter that just returns the features defined in its `features` configuration
- * key, like:
- *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
- */
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
 export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
     private features;
     constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
     getRegions(): Promise<{
         refName: string;
         start: number;

package/esm/FromConfigRegionsAdapter/FromConfigRegionsAdapter.js

@@ -1,23 +1,14 @@
-import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { readConfObject, } from '@jbrowse/core/configuration';
+import { readConfObject } from '@jbrowse/core/configuration';
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { makeFeatures } from '../FromConfigAdapter/FromConfigAdapter';
-/**
- * Adapter that just returns the features defined in its `features` configuration
- * key, like:
- *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
- */
 export default class FromConfigRegionsAdapter extends BaseAdapter {
     constructor(config, getSubAdapter, pluginManager) {
         super(config, getSubAdapter, pluginManager);
         const f = readConfObject(config, 'features');
         this.features = makeFeatures(f);
     }
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
     async getRegions() {
         const regions = [];
-        // recall: features are stored in this object sorted by start coordinate
         for (const [refName, features] of this.features) {
             let currentRegion;
             for (const feature of features) {
@@ -41,9 +32,8 @@ export default class FromConfigRegionsAdapter extends BaseAdapter {
                 regions.push(currentRegion);
             }
         }
-        // sort the regions by refName
         regions.sort((a, b) => a.refName.localeCompare(b.refName));
         return regions;
     }
-    freeResources( /* { region } */) { }
+    freeResources() { }
 }

package/esm/FromConfigRegionsAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const regionsConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     features: {
         type: string;
         defaultValue: never[];

package/esm/FromConfigRegionsAdapter/configSchema.js

@@ -1,13 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config FromConfigRegionsAdapter
- * used for specifying refNames+sizes of an assembly
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const regionsConfigSchema = ConfigurationSchema('FromConfigRegionsAdapter', {
-    /**
-     * #slot
-     */
     features: {
         type: 'frozen',
         defaultValue: [],

package/esm/FromConfigRegionsAdapter/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function FromConfigRegionsAdapterF(pluginManager: PluginManager): void;

package/esm/FromConfigSequenceAdapter/FromConfigSequenceAdapter.d.ts

@@ -1,26 +1,13 @@
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { NoAssemblyRegion } from '@jbrowse/core/util/types';
-import { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
+import type { RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { Feature } from '@jbrowse/core/util/simpleFeature';
+import type { NoAssemblyRegion } from '@jbrowse/core/util/types';
 export default class FromConfigSequenceAdapter extends FromConfigAdapter implements RegionsAdapter {
-    /**
-     * Fetch features for a certain region
-     * @param region - Region
-     * @returns Observable of Feature objects in the region
-     */
     getFeatures(region: NoAssemblyRegion): import("rxjs").Observable<Feature>;
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
     getRegions(): Promise<{
         start: number;
         end: number;
         refName: string;
     }[]>;
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the foreseeable future and can be purged
-     * from caches, etc
-     */
     freeResources(): void;
 }

package/esm/FromConfigSequenceAdapter/FromConfigSequenceAdapter.js

@@ -1,15 +1,9 @@
-import SimpleFeature from '@jbrowse/core/util/simpleFeature';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
+import SimpleFeature from '@jbrowse/core/util/simpleFeature';
+import { firstValueFrom } from 'rxjs';
 import { toArray } from 'rxjs/operators';
-// locals
 import FromConfigAdapter from '../FromConfigAdapter/FromConfigAdapter';
-import { firstValueFrom } from 'rxjs';
 export default class FromConfigSequenceAdapter extends FromConfigAdapter {
-    /**
-     * Fetch features for a certain region
-     * @param region - Region
-     * @returns Observable of Feature objects in the region
-     */
     getFeatures(region) {
         return ObservableCreate(async (observer) => {
             const feats = await firstValueFrom(super.getFeatures(region).pipe(toArray()));
@@ -26,12 +20,8 @@ export default class FromConfigSequenceAdapter extends FromConfigAdapter {
             observer.complete();
         });
     }
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
     async getRegions() {
         const regions = [];
-        // recall: features are stored in this object sorted by start coordinate
         for (const [refName, features] of this.features) {
             let currentRegion;
             for (const feature of features) {
@@ -57,10 +47,5 @@ export default class FromConfigSequenceAdapter extends FromConfigAdapter {
         }
         return regions;
     }
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the foreseeable future and can be purged
-     * from caches, etc
-     */
-    freeResources( /* { region } */) { }
+    freeResources() { }
 }

package/esm/FromConfigSequenceAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const sequenceConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     features: {
         type: string;
         defaultValue: never[];

package/esm/FromConfigSequenceAdapter/configSchema.js

@@ -1,12 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config FromConfigSequenceAdapter
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const sequenceConfigSchema = ConfigurationSchema('FromConfigSequenceAdapter', {
-    /**
-     * #slot
-     */
     features: {
         type: 'frozen',
         defaultValue: [],

package/esm/FromConfigSequenceAdapter/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function FromConfigSequenceAdapterF(pluginManager: PluginManager): void;

package/esm/NcbiSequenceReportAliasAdapter/NcbiSequenceReportAliasAdapter.d.ts

@@ -1,4 +1,5 @@
-import { BaseRefNameAliasAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { BaseRefNameAliasAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 export default class NcbiSequenceReportAliasAdapter extends BaseAdapter implements BaseRefNameAliasAdapter {
     getRefNameAliases(): Promise<{
         refName: string;

package/esm/NcbiSequenceReportAliasAdapter/NcbiSequenceReportAliasAdapter.js

@@ -1,4 +1,4 @@
-import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { openLocation } from '@jbrowse/core/util/io';
 export default class NcbiSequenceReportAliasAdapter extends BaseAdapter {
     async getRefNameAliases() {

package/esm/NcbiSequenceReportAliasAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const NcbiSequenceReportAliasAdapterConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     location: {
         type: string;
         defaultValue: {

package/esm/NcbiSequenceReportAliasAdapter/configSchema.js

@@ -1,13 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config NcbiSequenceReportAliasAdapter
- * can read "sequence_report.tsv" type files from NCBI
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const NcbiSequenceReportAliasAdapterConfigSchema = ConfigurationSchema('NcbiSequenceReportAliasAdapter', {
-    /**
-     * #slot
-     */
     location: {
         type: 'fileLocation',
         defaultValue: {

package/esm/NcbiSequenceReportAliasAdapter/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function NcbiSequenceReportAliasAdapterF(pluginManager: PluginManager): void;

package/esm/RefNameAliasAdapter/RefNameAliasAdapter.d.ts

@@ -1,4 +1,5 @@
-import { BaseRefNameAliasAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import type { BaseRefNameAliasAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 export default class RefNameAliasAdapter extends BaseAdapter implements BaseRefNameAliasAdapter {
     getRefNameAliases(): Promise<{
         refName: string;

package/esm/RefNameAliasAdapter/RefNameAliasAdapter.js

@@ -1,4 +1,4 @@
-import { BaseAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { openLocation } from '@jbrowse/core/util/io';
 export default class RefNameAliasAdapter extends BaseAdapter {
     async getRefNameAliases() {

package/esm/RefNameAliasAdapter/configSchema.d.ts

@@ -1,7 +1,4 @@
 declare const RefNameAliasAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     location: {
         type: string;
         defaultValue: {
@@ -9,11 +6,6 @@ declare const RefNameAliasAdapter: import("@jbrowse/core/configuration/configura
             locationType: string;
         };
     };
-    /**
-     * #slot
-     * by default, the "ref names that match the fasta" are assumed to be in the
-     * first column (0), change this variable if needed
-     */
     refNameColumn: {
         type: string;
         defaultValue: number;

package/esm/RefNameAliasAdapter/configSchema.js

@@ -1,14 +1,6 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
-/**
- * #config RefNameAliasAdapter
- * can read "chromAliases" type files from UCSC or any tab separated file of
- * refName aliases
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const RefNameAliasAdapter = ConfigurationSchema('RefNameAliasAdapter', {
-    /**
-     * #slot
-     */
     location: {
         type: 'fileLocation',
         defaultValue: {
@@ -16,11 +8,6 @@ const RefNameAliasAdapter = ConfigurationSchema('RefNameAliasAdapter', {
             locationType: 'UriLocation',
         },
     },
-    /**
-     * #slot
-     * by default, the "ref names that match the fasta" are assumed to be in the
-     * first column (0), change this variable if needed
-     */
     refNameColumn: {
         type: 'number',
         defaultValue: 0,