@jbrowse/plugin-config 1.7.0 → 1.7.4

package/dist/RefNameAliasAdapter/RefNameAliasAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -29,26 +29,26 @@ var _io = require("@jbrowse/core/util/io");
 
 var _configuration = require("@jbrowse/core/configuration");
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var RefNameAliasAdapter = /*#__PURE__*/function (_BaseAdapter) {
-  (0, _inherits2["default"])(RefNameAliasAdapter, _BaseAdapter);
+  (0, _inherits2.default)(RefNameAliasAdapter, _BaseAdapter);
 
   var _super = _createSuper(RefNameAliasAdapter);
 
   function RefNameAliasAdapter() {
-    (0, _classCallCheck2["default"])(this, RefNameAliasAdapter);
+    (0, _classCallCheck2.default)(this, RefNameAliasAdapter);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(RefNameAliasAdapter, [{
+  (0, _createClass2.default)(RefNameAliasAdapter, [{
     key: "getRefNameAliases",
     value: function () {
-      var _getRefNameAliases = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+      var _getRefNameAliases = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
         var loc, results, refColumn;
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -74,7 +74,7 @@ var RefNameAliasAdapter = /*#__PURE__*/function (_BaseAdapter) {
                   var aliases = row.split('\t');
 
                   var _aliases$splice = aliases.splice(refColumn, 1),
-                      _aliases$splice2 = (0, _slicedToArray2["default"])(_aliases$splice, 1),
+                      _aliases$splice2 = (0, _slicedToArray2.default)(_aliases$splice, 1),
                       refName = _aliases$splice2[0];
 
                   return {
@@ -100,8 +100,8 @@ var RefNameAliasAdapter = /*#__PURE__*/function (_BaseAdapter) {
   }, {
     key: "freeResources",
     value: function () {
-      var _freeResources = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+      var _freeResources = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -122,4 +122,4 @@ var RefNameAliasAdapter = /*#__PURE__*/function (_BaseAdapter) {
   return RefNameAliasAdapter;
 }(_BaseAdapter2.BaseAdapter);
 
-exports["default"] = RefNameAliasAdapter;
+exports.default = RefNameAliasAdapter;

package/dist/RefNameAliasAdapter/RefNameAliasAdapter.test.js

@@ -10,13 +10,13 @@ var _RefNameAliasAdapter = _interopRequireDefault(require("./RefNameAliasAdapter
 
 var _configSchema = _interopRequireDefault(require("./configSchema"));
 
-test('adapter can fetch a simple alias file', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch a simple alias file', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var adapter, result;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          adapter = new _RefNameAliasAdapter["default"](_configSchema["default"].create({
+          adapter = new _RefNameAliasAdapter.default(_configSchema.default.create({
             location: {
               localPath: require.resolve('./test_data/simple_alias.txt'),
               locationType: 'LocalPathLocation'

package/dist/RefNameAliasAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/RefNameAliasAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -23,4 +23,4 @@ var _default = (0, _configuration.ConfigurationSchema)('RefNameAliasAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/RefNameAliasAdapter/index.d.ts

@@ -1,2 +1,2 @@
-export { default as AdapterClass } from './RefNameAliasAdapter';
-export { default as configSchema } from './configSchema';
+export { default as AdapterClass } from './RefNameAliasAdapter';
+export { default as configSchema } from './configSchema';

package/dist/RefNameAliasAdapter/index.js

@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "AdapterClass", {
   enumerable: true,
   get: function get() {
-    return _RefNameAliasAdapter["default"];
+    return _RefNameAliasAdapter.default;
   }
 });
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/index.d.ts

@@ -1,12 +1,12 @@
-/// <reference types="react" />
-import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
-declare const ConfigurationEditorComponent: import("react").LazyExoticComponent<({ model }: {
-    model: any;
-}) => JSX.Element>;
-export default class extends Plugin {
-    name: string;
-    install(pluginManager: PluginManager): void;
-}
-export { default as JsonEditor } from './ConfigurationEditorWidget/components/JsonEditor';
-export { ConfigurationEditorComponent as ConfigurationEditor };
+/// <reference types="react" />
+import Plugin from '@jbrowse/core/Plugin';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const ConfigurationEditorComponent: import("react").LazyExoticComponent<({ model }: {
+    model: any;
+}) => JSX.Element>;
+export default class extends Plugin {
+    name: string;
+    install(pluginManager: PluginManager): void;
+}
+export { default as JsonEditor } from './ConfigurationEditorWidget/components/JsonEditor';
+export { ConfigurationEditorComponent as ConfigurationEditor };

package/dist/index.js

@@ -9,10 +9,10 @@ exports.ConfigurationEditor = void 0;
 Object.defineProperty(exports, "JsonEditor", {
   enumerable: true,
   get: function get() {
-    return _JsonEditor["default"];
+    return _JsonEditor.default;
   }
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 
@@ -46,13 +46,13 @@ var _RefNameAliasAdapter = require("./RefNameAliasAdapter");
 
 var _JsonEditor = _interopRequireDefault(require("./ConfigurationEditorWidget/components/JsonEditor"));
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var ConfigurationEditorComponent = /*#__PURE__*/(0, _react.lazy)(function () {
   return Promise.resolve().then(function () {
@@ -62,29 +62,29 @@ var ConfigurationEditorComponent = /*#__PURE__*/(0, _react.lazy)(function () {
 exports.ConfigurationEditor = ConfigurationEditorComponent;
 
 var _default = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(_default, _Plugin);
+  (0, _inherits2.default)(_default, _Plugin);
 
   var _super = _createSuper(_default);
 
   function _default() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, _default);
+    (0, _classCallCheck2.default)(this, _default);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'ConfigurationPlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'ConfigurationPlugin');
     return _this;
   }
 
-  (0, _createClass2["default"])(_default, [{
+  (0, _createClass2.default)(_default, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'FromConfigAdapter',
           configSchema: _FromConfigAdapter.configSchema,
           AdapterClass: _FromConfigAdapter.AdapterClass,
@@ -97,7 +97,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'FromConfigRegionsAdapter',
           configSchema: _FromConfigAdapter.regionsConfigSchema,
           AdapterClass: _FromConfigAdapter.RegionsAdapterClass,
@@ -110,7 +110,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'FromConfigSequenceAdapter',
           configSchema: _FromConfigAdapter.sequenceConfigSchema,
           AdapterClass: _FromConfigAdapter.SequenceAdapterClass,
@@ -123,7 +123,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'RefNameAliasAdapter',
           configSchema: _RefNameAliasAdapter.configSchema,
           AdapterClass: _RefNameAliasAdapter.AdapterClass,
@@ -136,7 +136,7 @@ var _default = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addWidgetType(function () {
-        return new _WidgetType["default"]({
+        return new _WidgetType.default({
           name: 'ConfigurationEditorWidget',
           HeadingComponent: _ConfigurationEditorWidget.HeadingComponent,
           configSchema: _ConfigurationEditorWidget.configSchema,
@@ -147,6 +147,6 @@ var _default = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return _default;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/index.test.js

@@ -13,14 +13,14 @@ describe('Config editing', function () {
   beforeAll(function () {
     var originalConsoleWarn = console.warn;
     console.warn = jest.fn();
-    pluginManager = new _PluginManager["default"]([new _["default"]()]);
+    pluginManager = new _PluginManager.default([new _.default()]);
     pluginManager.createPluggableElements();
     pluginManager.configure();
     console.warn = originalConsoleWarn;
   });
   it("won't add if already added", function () {
     expect(function () {
-      return pluginManager.addPlugin(new _["default"]());
+      return pluginManager.addPlugin(new _.default());
     }).toThrow(/JBrowse already configured, cannot add plugins/);
   });
   it('adds config editor widget', function () {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-config",
-  "version": "1.7.0",
+  "version": "1.7.4",
   "description": "JBrowse 2 config utilities",
   "keywords": [
     "jbrowse",
@@ -29,11 +29,12 @@
     "prepack": "yarn build; yarn useDist",
     "postpack": "yarn useSrc",
     "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js"
+    "useSrc": "node ../../scripts/useSrc.js",
+    "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
+    "@babel/runtime": "^7.17.9",
     "@material-ui/icons": "^4.9.1",
-    "generic-filehandle": "^2.2.2",
     "pluralize": "^8.0.0",
     "react-color": "^2.19.3",
     "react-simple-code-editor": "0.9.3",
@@ -52,5 +53,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
+  "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
 }

package/dist/ConfigurationEditorWidget/components/ConfigurationEditor.test.d.ts

@@ -1 +0,0 @@
-export {};

package/dist/index.test.d.ts

@@ -1 +0,0 @@
-export {};