@jbrowse/plugin-config 1.7.0 → 1.7.4

package/dist/FromConfigAdapter/FromConfigAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -35,13 +35,13 @@ var _rxjs = require("@jbrowse/core/util/rxjs");
 
 var _configuration = require("@jbrowse/core/configuration");
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
 function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
@@ -51,30 +51,30 @@ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Re
  *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
  */
 var FromConfigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-  (0, _inherits2["default"])(FromConfigAdapter, _BaseFeatureDataAdapt);
+  (0, _inherits2.default)(FromConfigAdapter, _BaseFeatureDataAdapt);
 
   var _super = _createSuper(FromConfigAdapter);
 
   function FromConfigAdapter(conf, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, FromConfigAdapter);
+    (0, _classCallCheck2.default)(this, FromConfigAdapter);
     _this = _super.call(this, conf, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "features", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "features", void 0);
     var feats = (0, _configuration.readConfObject)(conf, 'features');
     _this.features = FromConfigAdapter.makeFeatures(feats || []);
     return _this;
   }
 
-  (0, _createClass2["default"])(FromConfigAdapter, [{
+  (0, _createClass2.default)(FromConfigAdapter, [{
     key: "getRefNames",
     value: function () {
-      var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
-        return _regenerator["default"].wrap(function _callee$(_context) {
+      var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
-                return _context.abrupt("return", (0, _toConsumableArray2["default"])(this.features.keys()));
+                return _context.abrupt("return", (0, _toConsumableArray2.default)(this.features.keys()));
 
               case 1:
               case "end":
@@ -93,8 +93,8 @@ var FromConfigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "getRefNameAliases",
     value: function () {
-      var _getRefNameAliases = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+      var _getRefNameAliases = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -128,9 +128,9 @@ var FromConfigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
           start = region.start,
           end = region.end;
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(observer) {
+        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(observer) {
           var features, i, f;
-          return _regenerator["default"].wrap(function _callee3$(_context3) {
+          return _regenerator.default.wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
@@ -206,10 +206,10 @@ var FromConfigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "makeFeature",
     value: function makeFeature(data) {
-      return new _simpleFeature["default"](data);
+      return new _simpleFeature.default(data);
     }
   }]);
   return FromConfigAdapter;
 }(_BaseAdapter.BaseFeatureDataAdapter);
 
-exports["default"] = FromConfigAdapter;
+exports.default = FromConfigAdapter;

package/dist/FromConfigAdapter/FromConfigAdapter.test.js

@@ -12,9 +12,9 @@ var _FromConfigAdapter = _interopRequireDefault(require("./FromConfigAdapter"));
 
 var _configSchema = require("./configSchema");
 
-test('adapter can fetch features', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch features', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var features, adapter, result, featuresArray;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
@@ -29,7 +29,7 @@ test('adapter can fetch features', /*#__PURE__*/(0, _asyncToGenerator2["default"
             start: 50,
             end: 60
           }];
-          adapter = new _FromConfigAdapter["default"](_configSchema.configSchema.create({
+          adapter = new _FromConfigAdapter.default(_configSchema.configSchema.create({
             features: features
           }));
           result = adapter.getFeatures({
@@ -52,9 +52,9 @@ test('adapter can fetch features', /*#__PURE__*/(0, _asyncToGenerator2["default"
     }
   }, _callee);
 })));
-test('adapter can fetch features with subfeatures', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+test('adapter can fetch features with subfeatures', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
   var features, adapter, result, featuresArray;
-  return _regenerator["default"].wrap(function _callee2$(_context2) {
+  return _regenerator.default.wrap(function _callee2$(_context2) {
     while (1) {
       switch (_context2.prev = _context2.next) {
         case 0:
@@ -76,7 +76,7 @@ test('adapter can fetch features with subfeatures', /*#__PURE__*/(0, _asyncToGen
               name: 'Feature3'
             }]
           }];
-          adapter = new _FromConfigAdapter["default"](_configSchema.configSchema.create({
+          adapter = new _FromConfigAdapter.default(_configSchema.configSchema.create({
             features: features
           }));
           result = adapter.getFeatures({

package/dist/FromConfigAdapter/FromConfigRegionsAdapter.d.ts

@@ -1,23 +1,23 @@
-import { BaseAdapter, RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { ConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import { configSchema as FromConfigAdapterConfigSchema } from './configSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-/**
- * Adapter that just returns the features defined in its `features` configuration
- * key, like:
- *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
- */
-export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
-    private features;
-    constructor(config: ConfigurationModel<typeof FromConfigAdapterConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
-    getRegions(): Promise<{
-        refName: string;
-        start: number;
-        end: number;
-    }[]>;
-    freeResources(): void;
-}
+import { BaseAdapter, RegionsAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { ConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { configSchema as FromConfigAdapterConfigSchema } from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+/**
+ * Adapter that just returns the features defined in its `features` configuration
+ * key, like:
+ *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
+ */
+export default class FromConfigRegionsAdapter extends BaseAdapter implements RegionsAdapter {
+    private features;
+    constructor(config: ConfigurationModel<typeof FromConfigAdapterConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    /**
+     * Get refName, start, and end for all features after collapsing any overlaps
+     */
+    getRegions(): Promise<{
+        refName: string;
+        start: number;
+        end: number;
+    }[]>;
+    freeResources(): void;
+}

package/dist/FromConfigAdapter/FromConfigRegionsAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -33,13 +33,13 @@ var _configuration = require("@jbrowse/core/configuration");
 
 var _FromConfigAdapter = _interopRequireDefault(require("./FromConfigAdapter"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
 function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
@@ -49,18 +49,18 @@ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Re
  *   `"features": [ { "refName": "ctgA", "start":1, "end":20 }, ... ]`
  */
 var FromConfigRegionsAdapter = /*#__PURE__*/function (_BaseAdapter) {
-  (0, _inherits2["default"])(FromConfigRegionsAdapter, _BaseAdapter);
+  (0, _inherits2.default)(FromConfigRegionsAdapter, _BaseAdapter);
 
   var _super = _createSuper(FromConfigRegionsAdapter);
 
   function FromConfigRegionsAdapter(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, FromConfigRegionsAdapter);
+    (0, _classCallCheck2.default)(this, FromConfigRegionsAdapter);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "features", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "features", void 0);
     var features = (0, _configuration.readConfObject)(config, 'features');
-    _this.features = _FromConfigAdapter["default"].makeFeatures(features || []);
+    _this.features = _FromConfigAdapter.default.makeFeatures(features || []);
     return _this;
   }
   /**
@@ -68,13 +68,13 @@ var FromConfigRegionsAdapter = /*#__PURE__*/function (_BaseAdapter) {
    */
 
 
-  (0, _createClass2["default"])(FromConfigRegionsAdapter, [{
+  (0, _createClass2.default)(FromConfigRegionsAdapter, [{
     key: "getRegions",
     value: function () {
-      var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+      var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
         var regions, _iterator, _step, _step$value, refName, features, currentRegion, _iterator2, _step2, feature;
 
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -84,7 +84,7 @@ var FromConfigRegionsAdapter = /*#__PURE__*/function (_BaseAdapter) {
 
                 try {
                   for (_iterator.s(); !(_step = _iterator.n()).done;) {
-                    _step$value = (0, _slicedToArray2["default"])(_step.value, 2), refName = _step$value[0], features = _step$value[1];
+                    _step$value = (0, _slicedToArray2.default)(_step.value, 2), refName = _step$value[0], features = _step$value[1];
                     currentRegion = void 0;
                     _iterator2 = _createForOfIteratorHelper(features);
 
@@ -151,4 +151,4 @@ var FromConfigRegionsAdapter = /*#__PURE__*/function (_BaseAdapter) {
   return FromConfigRegionsAdapter;
 }(_BaseAdapter2.BaseAdapter);
 
-exports["default"] = FromConfigRegionsAdapter;
+exports.default = FromConfigRegionsAdapter;

package/dist/FromConfigAdapter/FromConfigRegionsAdapter.test.js

@@ -10,9 +10,9 @@ var _FromConfigRegionsAdapter = _interopRequireDefault(require("./FromConfigRegi
 
 var _configSchema = require("./configSchema");
 
-test('adapter can fetch regions 1', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch regions 1', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var features, adapter, result;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
@@ -32,7 +32,7 @@ test('adapter can fetch regions 1', /*#__PURE__*/(0, _asyncToGenerator2["default
             start: 50,
             end: 60
           }];
-          adapter = new _FromConfigRegionsAdapter["default"](_configSchema.regionsConfigSchema.create({
+          adapter = new _FromConfigRegionsAdapter.default(_configSchema.regionsConfigSchema.create({
             features: features
           }));
           _context.next = 4;
@@ -57,9 +57,9 @@ test('adapter can fetch regions 1', /*#__PURE__*/(0, _asyncToGenerator2["default
     }
   }, _callee);
 })));
-test('adapter can fetch regions 2', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+test('adapter can fetch regions 2', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
   var features, adapter, result;
-  return _regenerator["default"].wrap(function _callee2$(_context2) {
+  return _regenerator.default.wrap(function _callee2$(_context2) {
     while (1) {
       switch (_context2.prev = _context2.next) {
         case 0:
@@ -79,7 +79,7 @@ test('adapter can fetch regions 2', /*#__PURE__*/(0, _asyncToGenerator2["default
             start: 250,
             end: 400
           }];
-          adapter = new _FromConfigRegionsAdapter["default"](_configSchema.regionsConfigSchema.create({
+          adapter = new _FromConfigRegionsAdapter.default(_configSchema.regionsConfigSchema.create({
             features: features
           }));
           _context2.next = 4;
@@ -104,9 +104,9 @@ test('adapter can fetch regions 2', /*#__PURE__*/(0, _asyncToGenerator2["default
     }
   }, _callee2);
 })));
-test('adapter can fetch regions 3', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
+test('adapter can fetch regions 3', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
   var features, adapter, result;
-  return _regenerator["default"].wrap(function _callee3$(_context3) {
+  return _regenerator.default.wrap(function _callee3$(_context3) {
     while (1) {
       switch (_context3.prev = _context3.next) {
         case 0:
@@ -126,7 +126,7 @@ test('adapter can fetch regions 3', /*#__PURE__*/(0, _asyncToGenerator2["default
             start: 50,
             end: 60
           }];
-          adapter = new _FromConfigRegionsAdapter["default"](_configSchema.regionsConfigSchema.create({
+          adapter = new _FromConfigRegionsAdapter.default(_configSchema.regionsConfigSchema.create({
             features: features
           }));
           _context3.next = 4;
@@ -151,9 +151,9 @@ test('adapter can fetch regions 3', /*#__PURE__*/(0, _asyncToGenerator2["default
     }
   }, _callee3);
 })));
-test('adapter can fetch regions 4', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4() {
+test('adapter can fetch regions 4', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
   var features, adapter, result;
-  return _regenerator["default"].wrap(function _callee4$(_context4) {
+  return _regenerator.default.wrap(function _callee4$(_context4) {
     while (1) {
       switch (_context4.prev = _context4.next) {
         case 0:
@@ -173,7 +173,7 @@ test('adapter can fetch regions 4', /*#__PURE__*/(0, _asyncToGenerator2["default
             start: 50,
             end: 60
           }];
-          adapter = new _FromConfigRegionsAdapter["default"](_configSchema.regionsConfigSchema.create({
+          adapter = new _FromConfigRegionsAdapter.default(_configSchema.regionsConfigSchema.create({
             features: features
           }));
           _context4.next = 4;

package/dist/FromConfigAdapter/FromConfigSequenceAdapter.d.ts

@@ -1,25 +1,25 @@
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { NoAssemblyRegion } from '@jbrowse/core/util/types';
-import FromConfigAdapter from './FromConfigAdapter';
-export default class FromConfigSequenceAdapter extends FromConfigAdapter {
-    /**
-     * Fetch features for a certain region
-     * @param region - Region
-     * @returns Observable of Feature objects in the region
-     */
-    getFeatures(region: NoAssemblyRegion): import("rxjs").Observable<Feature>;
-    /**
-     * Get refName, start, and end for all features after collapsing any overlaps
-     */
-    getRegions(): Promise<{
-        refName: string;
-        start: number;
-        end: number;
-    }[]>;
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the forseeable future and can be purged
-     * from caches, etc
-     */
-    freeResources(): void;
-}
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { NoAssemblyRegion } from '@jbrowse/core/util/types';
+import FromConfigAdapter from './FromConfigAdapter';
+export default class FromConfigSequenceAdapter extends FromConfigAdapter {
+    /**
+     * Fetch features for a certain region
+     * @param region - Region
+     * @returns Observable of Feature objects in the region
+     */
+    getFeatures(region: NoAssemblyRegion): import("rxjs").Observable<Feature>;
+    /**
+     * Get refName, start, and end for all features after collapsing any overlaps
+     */
+    getRegions(): Promise<{
+        refName: string;
+        start: number;
+        end: number;
+    }[]>;
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources(): void;
+}

package/dist/FromConfigAdapter/FromConfigSequenceAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -35,7 +35,7 @@ var _operators = require("rxjs/operators");
 
 var _FromConfigAdapter2 = _interopRequireDefault(require("./FromConfigAdapter"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -43,23 +43,23 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
-  (0, _inherits2["default"])(FromConfigSequenceAdapter, _FromConfigAdapter);
+  (0, _inherits2.default)(FromConfigSequenceAdapter, _FromConfigAdapter);
 
   var _super = _createSuper(FromConfigSequenceAdapter);
 
   function FromConfigSequenceAdapter() {
-    (0, _classCallCheck2["default"])(this, FromConfigSequenceAdapter);
+    (0, _classCallCheck2.default)(this, FromConfigSequenceAdapter);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(FromConfigSequenceAdapter, [{
+  (0, _createClass2.default)(FromConfigSequenceAdapter, [{
     key: "getFeatures",
     value:
     /**
@@ -74,11 +74,11 @@ var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
       // xref: https://github.com/rollup/rollup/blob/master/CHANGELOG.md#bug-fixes-45
       // return ObservableCreate<Feature>(async observer => {
       //   const feats = await super.getFeatures(region).pipe(toArray()).toPromise()
-      var superGetFeatures = (0, _get2["default"])((0, _getPrototypeOf2["default"])(FromConfigSequenceAdapter.prototype), "getFeatures", this);
+      var superGetFeatures = (0, _get2.default)((0, _getPrototypeOf2.default)(FromConfigSequenceAdapter.prototype), "getFeatures", this);
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(observer) {
+        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(observer) {
           var feats, feat;
-          return _regenerator["default"].wrap(function _callee$(_context) {
+          return _regenerator.default.wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -88,7 +88,7 @@ var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
                 case 2:
                   feats = _context.sent;
                   feat = feats[0];
-                  observer.next(new _simpleFeature["default"](_objectSpread(_objectSpread({}, feat.toJSON()), {}, {
+                  observer.next(new _simpleFeature.default(_objectSpread(_objectSpread({}, feat.toJSON()), {}, {
                     uniqueId: "".concat(feat.id(), ":").concat(region.start, "-").concat(region.end),
                     end: region.end,
                     start: region.start,
@@ -116,10 +116,10 @@ var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
   }, {
     key: "getRegions",
     value: function () {
-      var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+      var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
         var regions, _iterator, _step, _step$value, refName, features, currentRegion, _iterator2, _step2, feature;
 
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -129,7 +129,7 @@ var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
 
                 try {
                   for (_iterator.s(); !(_step = _iterator.n()).done;) {
-                    _step$value = (0, _slicedToArray2["default"])(_step.value, 2), refName = _step$value[0], features = _step$value[1];
+                    _step$value = (0, _slicedToArray2.default)(_step.value, 2), refName = _step$value[0], features = _step$value[1];
                     currentRegion = void 0;
                     _iterator2 = _createForOfIteratorHelper(features);
 
@@ -196,6 +196,6 @@ var FromConfigSequenceAdapter = /*#__PURE__*/function (_FromConfigAdapter) {
     freeResources() {}
   }]);
   return FromConfigSequenceAdapter;
-}(_FromConfigAdapter2["default"]);
+}(_FromConfigAdapter2.default);
 
-exports["default"] = FromConfigSequenceAdapter;
+exports.default = FromConfigSequenceAdapter;

package/dist/FromConfigAdapter/FromConfigSequenceAdapter.test.js

@@ -12,9 +12,9 @@ var _FromConfigSequenceAdapter = _interopRequireDefault(require("./FromConfigSeq
 
 var _configSchema = require("./configSchema");
 
-test('adapter can fetch sequences when there is just one feature representing whole refseq', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch sequences when there is just one feature representing whole refseq', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var features, adapter, result, featuresArray, result2, featuresArray2;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
@@ -25,7 +25,7 @@ test('adapter can fetch sequences when there is just one feature representing wh
             end: 150,
             seq: 'ccaaaccgtcaattaaccggtatcttctcggaaacggcggttctctcctagatagcgatctgtggtctcaccatgcaatttaaacaggtgagtaaagattgctacaaatacgagactagctgtcaccagatgctgttcatctgttggctc'
           }];
-          adapter = new _FromConfigSequenceAdapter["default"](_configSchema.sequenceConfigSchema.create({
+          adapter = new _FromConfigSequenceAdapter.default(_configSchema.sequenceConfigSchema.create({
             features: features
           }));
           result = adapter.getFeatures({
@@ -60,9 +60,9 @@ test('adapter can fetch sequences when there is just one feature representing wh
     }
   }, _callee);
 })));
-test("adapter can fetch sequences when the config's sequence doesn't start at 0", /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+test("adapter can fetch sequences when the config's sequence doesn't start at 0", /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
   var features, adapter, result, featuresArray, result2, featuresArray2;
-  return _regenerator["default"].wrap(function _callee2$(_context2) {
+  return _regenerator.default.wrap(function _callee2$(_context2) {
     while (1) {
       switch (_context2.prev = _context2.next) {
         case 0:
@@ -73,7 +73,7 @@ test("adapter can fetch sequences when the config's sequence doesn't start at 0"
             end: 5150,
             seq: 'ccaaaccgtcaattaaccggtatcttctcggaaacggcggttctctcctagatagcgatctgtggtctcaccatgcaatttaaacaggtgagtaaagattgctacaaatacgagactagctgtcaccagatgctgttcatctgttggctc'
           }];
-          adapter = new _FromConfigSequenceAdapter["default"](_configSchema.sequenceConfigSchema.create({
+          adapter = new _FromConfigSequenceAdapter.default(_configSchema.sequenceConfigSchema.create({
             features: features
           }));
           result = adapter.getFeatures({

package/dist/FromConfigAdapter/configSchema.d.ts

@@ -1,3 +1,3 @@
-export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export declare const regionsConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export declare const sequenceConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare const regionsConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare const sequenceConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/FromConfigAdapter/index.d.ts

@@ -1,4 +1,4 @@
-export { default as AdapterClass } from './FromConfigAdapter';
-export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
-export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
-export { configSchema, regionsConfigSchema, sequenceConfigSchema, } from './configSchema';
+export { default as AdapterClass } from './FromConfigAdapter';
+export { default as RegionsAdapterClass } from './FromConfigRegionsAdapter';
+export { default as SequenceAdapterClass } from './FromConfigSequenceAdapter';
+export { configSchema, regionsConfigSchema, sequenceConfigSchema, } from './configSchema';

package/dist/FromConfigAdapter/index.js

@@ -8,19 +8,19 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "AdapterClass", {
   enumerable: true,
   get: function get() {
-    return _FromConfigAdapter["default"];
+    return _FromConfigAdapter.default;
   }
 });
 Object.defineProperty(exports, "RegionsAdapterClass", {
   enumerable: true,
   get: function get() {
-    return _FromConfigRegionsAdapter["default"];
+    return _FromConfigRegionsAdapter.default;
   }
 });
 Object.defineProperty(exports, "SequenceAdapterClass", {
   enumerable: true,
   get: function get() {
-    return _FromConfigSequenceAdapter["default"];
+    return _FromConfigSequenceAdapter.default;
   }
 });
 Object.defineProperty(exports, "configSchema", {

package/dist/RefNameAliasAdapter/RefNameAliasAdapter.d.ts

@@ -1,8 +1,8 @@
-import { BaseRefNameAliasAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
-export default class RefNameAliasAdapter extends BaseAdapter implements BaseRefNameAliasAdapter {
-    getRefNameAliases(): Promise<{
-        refName: string;
-        aliases: string[];
-    }[]>;
-    freeResources(): Promise<void>;
-}
+import { BaseRefNameAliasAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
+export default class RefNameAliasAdapter extends BaseAdapter implements BaseRefNameAliasAdapter {
+    getRefNameAliases(): Promise<{
+        refName: string;
+        aliases: string[];
+    }[]>;
+    freeResources(): Promise<void>;
+}