@jbrowse/plugin-comparative-adapters 2.6.1

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Files changed (178) hide show
  1. package/LICENSE +201 -0
  2. package/dist/ChainAdapter/ChainAdapter.d.ts +19 -0
  3. package/dist/ChainAdapter/ChainAdapter.js +22 -0
  4. package/dist/ChainAdapter/ChainAdapter.js.map +1 -0
  5. package/dist/ChainAdapter/configSchema.d.ts +39 -0
  6. package/dist/ChainAdapter/configSchema.js +45 -0
  7. package/dist/ChainAdapter/configSchema.js.map +1 -0
  8. package/dist/ChainAdapter/index.d.ts +3 -0
  9. package/dist/ChainAdapter/index.js +42 -0
  10. package/dist/ChainAdapter/index.js.map +1 -0
  11. package/dist/ChainAdapter/util.d.ts +16 -0
  12. package/dist/ChainAdapter/util.js +134 -0
  13. package/dist/ChainAdapter/util.js.map +1 -0
  14. package/dist/DeltaAdapter/DeltaAdapter.d.ts +20 -0
  15. package/dist/DeltaAdapter/DeltaAdapter.js +22 -0
  16. package/dist/DeltaAdapter/DeltaAdapter.js.map +1 -0
  17. package/dist/DeltaAdapter/configSchema.d.ts +39 -0
  18. package/dist/DeltaAdapter/configSchema.js +45 -0
  19. package/dist/DeltaAdapter/configSchema.js.map +1 -0
  20. package/dist/DeltaAdapter/index.d.ts +3 -0
  21. package/dist/DeltaAdapter/index.js +42 -0
  22. package/dist/DeltaAdapter/index.js.map +1 -0
  23. package/dist/DeltaAdapter/util.d.ts +17 -0
  24. package/dist/DeltaAdapter/util.js +152 -0
  25. package/dist/DeltaAdapter/util.js.map +1 -0
  26. package/dist/MCScanAnchorsAdapter/MCScanAnchorsAdapter.d.ts +33 -0
  27. package/dist/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js +96 -0
  28. package/dist/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js.map +1 -0
  29. package/dist/MCScanAnchorsAdapter/configSchema.d.ts +40 -0
  30. package/dist/MCScanAnchorsAdapter/configSchema.js +48 -0
  31. package/dist/MCScanAnchorsAdapter/configSchema.js.map +1 -0
  32. package/dist/MCScanAnchorsAdapter/index.d.ts +3 -0
  33. package/dist/MCScanAnchorsAdapter/index.js +42 -0
  34. package/dist/MCScanAnchorsAdapter/index.js.map +1 -0
  35. package/dist/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.d.ts +41 -0
  36. package/dist/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js +121 -0
  37. package/dist/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js.map +1 -0
  38. package/dist/MCScanSimpleAnchorsAdapter/configSchema.d.ts +40 -0
  39. package/dist/MCScanSimpleAnchorsAdapter/configSchema.js +48 -0
  40. package/dist/MCScanSimpleAnchorsAdapter/configSchema.js.map +1 -0
  41. package/dist/MCScanSimpleAnchorsAdapter/index.d.ts +3 -0
  42. package/dist/MCScanSimpleAnchorsAdapter/index.js +42 -0
  43. package/dist/MCScanSimpleAnchorsAdapter/index.js.map +1 -0
  44. package/dist/MashMapAdapter/MashMapAdapter.d.ts +5 -0
  45. package/dist/MashMapAdapter/MashMapAdapter.js +42 -0
  46. package/dist/MashMapAdapter/MashMapAdapter.js.map +1 -0
  47. package/dist/MashMapAdapter/configSchema.d.ts +37 -0
  48. package/dist/MashMapAdapter/configSchema.js +45 -0
  49. package/dist/MashMapAdapter/configSchema.js.map +1 -0
  50. package/dist/MashMapAdapter/index.d.ts +3 -0
  51. package/dist/MashMapAdapter/index.js +42 -0
  52. package/dist/MashMapAdapter/index.js.map +1 -0
  53. package/dist/PAFAdapter/PAFAdapter.d.ts +20 -0
  54. package/dist/PAFAdapter/PAFAdapter.js +152 -0
  55. package/dist/PAFAdapter/PAFAdapter.js.map +1 -0
  56. package/dist/PAFAdapter/SyntenyFeature.d.ts +4 -0
  57. package/dist/PAFAdapter/SyntenyFeature.js +17 -0
  58. package/dist/PAFAdapter/SyntenyFeature.js.map +1 -0
  59. package/dist/PAFAdapter/configSchema.d.ts +37 -0
  60. package/dist/PAFAdapter/configSchema.js +45 -0
  61. package/dist/PAFAdapter/configSchema.js.map +1 -0
  62. package/dist/PAFAdapter/index.d.ts +3 -0
  63. package/dist/PAFAdapter/index.js +42 -0
  64. package/dist/PAFAdapter/index.js.map +1 -0
  65. package/dist/PAFAdapter/util.d.ts +20 -0
  66. package/dist/PAFAdapter/util.js +134 -0
  67. package/dist/PAFAdapter/util.js.map +1 -0
  68. package/dist/index.d.ts +6 -0
  69. package/dist/index.js +51 -0
  70. package/dist/index.js.map +1 -0
  71. package/dist/util.d.ts +16 -0
  72. package/dist/util.js +57 -0
  73. package/dist/util.js.map +1 -0
  74. package/esm/ChainAdapter/ChainAdapter.d.ts +19 -0
  75. package/esm/ChainAdapter/ChainAdapter.js +16 -0
  76. package/esm/ChainAdapter/ChainAdapter.js.map +1 -0
  77. package/esm/ChainAdapter/configSchema.d.ts +39 -0
  78. package/esm/ChainAdapter/configSchema.js +43 -0
  79. package/esm/ChainAdapter/configSchema.js.map +1 -0
  80. package/esm/ChainAdapter/index.d.ts +3 -0
  81. package/esm/ChainAdapter/index.js +14 -0
  82. package/esm/ChainAdapter/index.js.map +1 -0
  83. package/esm/ChainAdapter/util.d.ts +16 -0
  84. package/esm/ChainAdapter/util.js +130 -0
  85. package/esm/ChainAdapter/util.js.map +1 -0
  86. package/esm/DeltaAdapter/DeltaAdapter.d.ts +20 -0
  87. package/esm/DeltaAdapter/DeltaAdapter.js +16 -0
  88. package/esm/DeltaAdapter/DeltaAdapter.js.map +1 -0
  89. package/esm/DeltaAdapter/configSchema.d.ts +39 -0
  90. package/esm/DeltaAdapter/configSchema.js +43 -0
  91. package/esm/DeltaAdapter/configSchema.js.map +1 -0
  92. package/esm/DeltaAdapter/index.d.ts +3 -0
  93. package/esm/DeltaAdapter/index.js +14 -0
  94. package/esm/DeltaAdapter/index.js.map +1 -0
  95. package/esm/DeltaAdapter/util.d.ts +17 -0
  96. package/esm/DeltaAdapter/util.js +148 -0
  97. package/esm/DeltaAdapter/util.js.map +1 -0
  98. package/esm/MCScanAnchorsAdapter/MCScanAnchorsAdapter.d.ts +33 -0
  99. package/esm/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js +94 -0
  100. package/esm/MCScanAnchorsAdapter/MCScanAnchorsAdapter.js.map +1 -0
  101. package/esm/MCScanAnchorsAdapter/configSchema.d.ts +40 -0
  102. package/esm/MCScanAnchorsAdapter/configSchema.js +46 -0
  103. package/esm/MCScanAnchorsAdapter/configSchema.js.map +1 -0
  104. package/esm/MCScanAnchorsAdapter/index.d.ts +3 -0
  105. package/esm/MCScanAnchorsAdapter/index.js +14 -0
  106. package/esm/MCScanAnchorsAdapter/index.js.map +1 -0
  107. package/esm/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.d.ts +41 -0
  108. package/esm/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js +116 -0
  109. package/esm/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.js.map +1 -0
  110. package/esm/MCScanSimpleAnchorsAdapter/configSchema.d.ts +40 -0
  111. package/esm/MCScanSimpleAnchorsAdapter/configSchema.js +46 -0
  112. package/esm/MCScanSimpleAnchorsAdapter/configSchema.js.map +1 -0
  113. package/esm/MCScanSimpleAnchorsAdapter/index.d.ts +3 -0
  114. package/esm/MCScanSimpleAnchorsAdapter/index.js +14 -0
  115. package/esm/MCScanSimpleAnchorsAdapter/index.js.map +1 -0
  116. package/esm/MashMapAdapter/MashMapAdapter.d.ts +5 -0
  117. package/esm/MashMapAdapter/MashMapAdapter.js +36 -0
  118. package/esm/MashMapAdapter/MashMapAdapter.js.map +1 -0
  119. package/esm/MashMapAdapter/configSchema.d.ts +37 -0
  120. package/esm/MashMapAdapter/configSchema.js +43 -0
  121. package/esm/MashMapAdapter/configSchema.js.map +1 -0
  122. package/esm/MashMapAdapter/index.d.ts +3 -0
  123. package/esm/MashMapAdapter/index.js +14 -0
  124. package/esm/MashMapAdapter/index.js.map +1 -0
  125. package/esm/PAFAdapter/PAFAdapter.d.ts +20 -0
  126. package/esm/PAFAdapter/PAFAdapter.js +147 -0
  127. package/esm/PAFAdapter/PAFAdapter.js.map +1 -0
  128. package/esm/PAFAdapter/SyntenyFeature.d.ts +4 -0
  129. package/esm/PAFAdapter/SyntenyFeature.js +14 -0
  130. package/esm/PAFAdapter/SyntenyFeature.js.map +1 -0
  131. package/esm/PAFAdapter/configSchema.d.ts +37 -0
  132. package/esm/PAFAdapter/configSchema.js +43 -0
  133. package/esm/PAFAdapter/configSchema.js.map +1 -0
  134. package/esm/PAFAdapter/index.d.ts +3 -0
  135. package/esm/PAFAdapter/index.js +14 -0
  136. package/esm/PAFAdapter/index.js.map +1 -0
  137. package/esm/PAFAdapter/util.d.ts +20 -0
  138. package/esm/PAFAdapter/util.js +127 -0
  139. package/esm/PAFAdapter/util.js.map +1 -0
  140. package/esm/index.d.ts +6 -0
  141. package/esm/index.js +45 -0
  142. package/esm/index.js.map +1 -0
  143. package/esm/util.d.ts +16 -0
  144. package/esm/util.js +49 -0
  145. package/esm/util.js.map +1 -0
  146. package/package.json +63 -0
  147. package/src/ChainAdapter/ChainAdapter.ts +18 -0
  148. package/src/ChainAdapter/configSchema.ts +50 -0
  149. package/src/ChainAdapter/index.ts +18 -0
  150. package/src/ChainAdapter/util.ts +170 -0
  151. package/src/DeltaAdapter/DeltaAdapter.ts +18 -0
  152. package/src/DeltaAdapter/configSchema.ts +50 -0
  153. package/src/DeltaAdapter/index.ts +18 -0
  154. package/src/DeltaAdapter/util.ts +149 -0
  155. package/src/MCScanAnchorsAdapter/MCScanAnchorsAdapter.test.ts +45 -0
  156. package/src/MCScanAnchorsAdapter/MCScanAnchorsAdapter.ts +134 -0
  157. package/src/MCScanAnchorsAdapter/configSchema.ts +52 -0
  158. package/src/MCScanAnchorsAdapter/index.ts +20 -0
  159. package/src/MCScanAnchorsAdapter/test_data/grape.bed.gz +0 -0
  160. package/src/MCScanAnchorsAdapter/test_data/grape.peach.anchors.gz +0 -0
  161. package/src/MCScanAnchorsAdapter/test_data/peach.bed.gz +0 -0
  162. package/src/MCScanSimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.ts +157 -0
  163. package/src/MCScanSimpleAnchorsAdapter/configSchema.ts +52 -0
  164. package/src/MCScanSimpleAnchorsAdapter/index.ts +19 -0
  165. package/src/MashMapAdapter/MashMapAdapter.ts +40 -0
  166. package/src/MashMapAdapter/configSchema.ts +51 -0
  167. package/src/MashMapAdapter/index.ts +18 -0
  168. package/src/PAFAdapter/PAFAdapter.test.ts +37 -0
  169. package/src/PAFAdapter/PAFAdapter.ts +181 -0
  170. package/src/PAFAdapter/SyntenyFeature.ts +15 -0
  171. package/src/PAFAdapter/configSchema.ts +50 -0
  172. package/src/PAFAdapter/index.ts +18 -0
  173. package/src/PAFAdapter/test_data/grape.peach.anchors +14966 -0
  174. package/src/PAFAdapter/test_data/peach_grape.paf +30 -0
  175. package/src/PAFAdapter/util.test.ts +7 -0
  176. package/src/PAFAdapter/util.ts +176 -0
  177. package/src/index.ts +62 -0
  178. package/src/util.ts +66 -0

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