@jbrowse/plugin-comparative-adapters 2.6.1

package/src/PAFAdapter/configSchema.ts

@@ -0,0 +1,50 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration'
+
+/**
+ * #config PAFAdapter
+ */
+function x() {} // eslint-disable-line @typescript-eslint/no-unused-vars
+
+const PAFAdapter = ConfigurationSchema(
+  'PAFAdapter',
+  {
+    /**
+     * #slot
+     */
+    assemblyNames: {
+      type: 'stringArray',
+      defaultValue: [],
+      description:
+        'Array of assembly names to use for this file. The target assembly name is the first value in the array, query assembly name is the second',
+    },
+    /**
+     * #slot
+     */
+    targetAssembly: {
+      type: 'string',
+      defaultValue: '',
+      description: 'Alternative to assemblyNames: the target assembly name',
+    },
+    /**
+     * #slot
+     */
+    queryAssembly: {
+      type: 'string',
+      defaultValue: '',
+      description: 'Alternative to assemblyNames: the query assembly name',
+    },
+    /**
+     * #slot
+     */
+    pafLocation: {
+      type: 'fileLocation',
+      defaultValue: {
+        uri: '/path/to/file.paf',
+        locationType: 'UriLocation',
+      },
+    },
+  },
+  { explicitlyTyped: true },
+)
+
+export default PAFAdapter

package/src/PAFAdapter/index.ts

@@ -0,0 +1,18 @@
+import PluginManager from '@jbrowse/core/PluginManager'
+import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType'
+import configSchema from './configSchema'
+
+export default (pluginManager: PluginManager) => {
+  pluginManager.addAdapterType(
+    () =>
+      new AdapterType({
+        name: 'PAFAdapter',
+        displayName: 'PAF adapter',
+        configSchema,
+        adapterMetadata: {
+          hiddenFromGUI: true,
+        },
+        getAdapterClass: () => import('./PAFAdapter').then(r => r.default),
+      }),
+  )
+}