@jbrowse/plugin-circular-view 2.17.0 → 3.0.0

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Files changed (83) hide show
  1. package/dist/BaseChordDisplay/components/BaseChordDisplay.d.ts +1 -2
  2. package/dist/BaseChordDisplay/components/BaseChordDisplay.js +8 -7
  3. package/dist/BaseChordDisplay/components/DisplayError.d.ts +1 -2
  4. package/dist/BaseChordDisplay/components/DisplayError.js +2 -11
  5. package/dist/BaseChordDisplay/components/Loading.d.ts +1 -2
  6. package/dist/BaseChordDisplay/components/Loading.js +4 -34
  7. package/dist/BaseChordDisplay/{models/configSchema.d.ts → configSchema.d.ts} +0 -3
  8. package/dist/BaseChordDisplay/{models/configSchema.js → configSchema.js} +1 -10
  9. package/dist/BaseChordDisplay/index.d.ts +2 -2
  10. package/dist/BaseChordDisplay/index.js +2 -2
  11. package/{esm/BaseChordDisplay/models → dist/BaseChordDisplay}/model.d.ts +12 -54
  12. package/dist/BaseChordDisplay/{models/model.js → model.js} +31 -94
  13. package/dist/BaseChordDisplay/renderReaction.d.ts +27 -0
  14. package/dist/BaseChordDisplay/{models/renderReaction.js → renderReaction.js} +5 -13
  15. package/dist/CircularView/components/CircularView.d.ts +2 -3
  16. package/dist/CircularView/components/CircularView.js +22 -31
  17. package/dist/CircularView/components/Controls.d.ts +2 -3
  18. package/dist/CircularView/components/Controls.js +33 -70
  19. package/dist/CircularView/components/ExportSvgDialog.d.ts +2 -3
  20. package/dist/CircularView/components/ExportSvgDialog.js +32 -67
  21. package/dist/CircularView/components/ImportForm.d.ts +2 -3
  22. package/dist/CircularView/components/ImportForm.js +12 -42
  23. package/dist/CircularView/components/Ruler.d.ts +3 -4
  24. package/dist/CircularView/components/Ruler.js +18 -37
  25. package/dist/CircularView/index.d.ts +1 -1
  26. package/dist/CircularView/index.js +18 -8
  27. package/dist/CircularView/{models/model.d.ts → model.d.ts} +9 -158
  28. package/dist/CircularView/{models/model.js → model.js} +25 -224
  29. package/dist/CircularView/{models/slices.d.ts → slices.d.ts} +1 -1
  30. package/dist/CircularView/svgcomponents/SVGBackground.d.ts +1 -2
  31. package/dist/CircularView/svgcomponents/SVGBackground.js +3 -6
  32. package/dist/CircularView/svgcomponents/SVGCircularView.d.ts +1 -1
  33. package/dist/CircularView/svgcomponents/SVGCircularView.js +5 -17
  34. package/dist/CircularView/{models/viewportVisibleRegion.js → viewportVisibleRegion.js} +0 -70
  35. package/dist/LaunchCircularView/index.d.ts +1 -1
  36. package/dist/LaunchCircularView/index.js +1 -3
  37. package/dist/index.d.ts +3 -3
  38. package/dist/index.js +5 -7
  39. package/esm/BaseChordDisplay/components/BaseChordDisplay.d.ts +1 -2
  40. package/esm/BaseChordDisplay/components/BaseChordDisplay.js +8 -7
  41. package/esm/BaseChordDisplay/components/DisplayError.d.ts +1 -2
  42. package/esm/BaseChordDisplay/components/DisplayError.js +2 -8
  43. package/esm/BaseChordDisplay/components/Loading.d.ts +1 -2
  44. package/esm/BaseChordDisplay/components/Loading.js +4 -11
  45. package/esm/BaseChordDisplay/{models/configSchema.d.ts → configSchema.d.ts} +0 -3
  46. package/esm/BaseChordDisplay/{models/configSchema.js → configSchema.js} +1 -10
  47. package/esm/BaseChordDisplay/index.d.ts +2 -2
  48. package/esm/BaseChordDisplay/index.js +2 -2
  49. package/{dist/BaseChordDisplay/models → esm/BaseChordDisplay}/model.d.ts +12 -54
  50. package/esm/BaseChordDisplay/{models/model.js → model.js} +32 -92
  51. package/esm/BaseChordDisplay/renderReaction.d.ts +27 -0
  52. package/esm/BaseChordDisplay/{models/renderReaction.js → renderReaction.js} +5 -10
  53. package/esm/CircularView/components/CircularView.d.ts +2 -3
  54. package/esm/CircularView/components/CircularView.js +22 -31
  55. package/esm/CircularView/components/Controls.d.ts +2 -3
  56. package/esm/CircularView/components/Controls.js +33 -47
  57. package/esm/CircularView/components/ExportSvgDialog.d.ts +2 -3
  58. package/esm/CircularView/components/ExportSvgDialog.js +32 -44
  59. package/esm/CircularView/components/ImportForm.d.ts +2 -3
  60. package/esm/CircularView/components/ImportForm.js +12 -19
  61. package/esm/CircularView/components/Ruler.d.ts +3 -4
  62. package/esm/CircularView/components/Ruler.js +19 -35
  63. package/esm/CircularView/index.d.ts +1 -1
  64. package/esm/CircularView/index.js +1 -1
  65. package/esm/CircularView/{models/model.d.ts → model.d.ts} +9 -158
  66. package/esm/CircularView/{models/model.js → model.js} +9 -218
  67. package/esm/CircularView/{models/slices.d.ts → slices.d.ts} +1 -1
  68. package/esm/CircularView/{models/slices.js → slices.js} +1 -1
  69. package/esm/CircularView/svgcomponents/SVGBackground.d.ts +1 -2
  70. package/esm/CircularView/svgcomponents/SVGBackground.js +3 -3
  71. package/esm/CircularView/svgcomponents/SVGCircularView.d.ts +1 -1
  72. package/esm/CircularView/svgcomponents/SVGCircularView.js +5 -17
  73. package/esm/CircularView/{models/viewportVisibleRegion.js → viewportVisibleRegion.js} +0 -70
  74. package/esm/LaunchCircularView/index.d.ts +1 -1
  75. package/esm/LaunchCircularView/index.js +1 -3
  76. package/esm/index.d.ts +3 -3
  77. package/esm/index.js +3 -5
  78. package/package.json +2 -3
  79. package/dist/BaseChordDisplay/models/renderReaction.d.ts +0 -45
  80. package/esm/BaseChordDisplay/models/renderReaction.d.ts +0 -45
  81. /package/dist/CircularView/{models/slices.js → slices.js} +0 -0
  82. /package/dist/CircularView/{models/viewportVisibleRegion.d.ts → viewportVisibleRegion.d.ts} +0 -0
  83. /package/esm/CircularView/{models/viewportVisibleRegion.d.ts → viewportVisibleRegion.d.ts} +0 -0
@@ -1,2 +1,2 @@
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- import PluginManager from '@jbrowse/core/PluginManager';
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+ import type PluginManager from '@jbrowse/core/PluginManager';
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  export default function LaunchCircularViewF(pluginManager: PluginManager): void;
@@ -1,8 +1,6 @@
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  import { when } from 'mobx';
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  export default function LaunchCircularViewF(pluginManager) {
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- pluginManager.addToExtensionPoint('LaunchView-CircularView',
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- // @ts-expect-error
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- async ({ session, assembly, tracks = [], }) => {
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+ pluginManager.addToExtensionPoint('LaunchView-CircularView', async ({ session, assembly, tracks = [], }) => {
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  const { assemblyManager } = session;
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  const view = session.addView('CircularView', {});
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  await when(() => view.initialized);
package/esm/index.d.ts CHANGED
@@ -1,9 +1,9 @@
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- import PluginManager from '@jbrowse/core/PluginManager';
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  import Plugin from '@jbrowse/core/Plugin';
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+ import type PluginManager from '@jbrowse/core/PluginManager';
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  export default class CircularViewPlugin extends Plugin {
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  name: string;
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  install(pluginManager: PluginManager): void;
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  configure(pluginManager: PluginManager): void;
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  }
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- export { baseChordDisplayConfig, BaseChordDisplayModel, BaseChordDisplayComponent, } from './BaseChordDisplay';
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- export { type CircularViewModel, type CircularViewStateModel, } from './CircularView/models/model';
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+ export { BaseChordDisplayComponent, BaseChordDisplayModel, baseChordDisplayConfig, } from './BaseChordDisplay';
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+ export { type CircularViewModel, type CircularViewStateModel, } from './CircularView/model';
package/esm/index.js CHANGED
@@ -1,10 +1,8 @@
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- import { isAbstractMenuManager } from '@jbrowse/core/util';
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  import Plugin from '@jbrowse/core/Plugin';
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- // locals
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+ import { isAbstractMenuManager } from '@jbrowse/core/util';
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+ import DataUsageIcon from '@mui/icons-material/DataUsage';
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  import CircularViewF from './CircularView';
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  import LaunchCircularViewF from './LaunchCircularView';
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- // icons
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- import DataUsageIcon from '@mui/icons-material/DataUsage';
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  export default class CircularViewPlugin extends Plugin {
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  constructor() {
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  super(...arguments);
@@ -26,4 +24,4 @@ export default class CircularViewPlugin extends Plugin {
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  }
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  }
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  }
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- export { baseChordDisplayConfig, BaseChordDisplayModel, BaseChordDisplayComponent, } from './BaseChordDisplay';
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+ export { BaseChordDisplayComponent, BaseChordDisplayModel, baseChordDisplayConfig, } from './BaseChordDisplay';
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/plugin-circular-view",
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- "version": "2.17.0",
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+ "version": "3.0.0",
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  "description": "JBrowse 2 circular view",
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  "keywords": [
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  "jbrowse",
@@ -38,7 +38,6 @@
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  "dependencies": {
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  "@mui/icons-material": "^6.0.0",
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  "@types/file-saver": "^2.0.0",
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- "clone": "^2.1.2",
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  "file-saver": "^2.0.0"
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  },
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  "peerDependencies": {
@@ -57,5 +56,5 @@
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  "distModule": "esm/index.js",
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  "srcModule": "src/index.ts",
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  "module": "esm/index.js",
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- "gitHead": "eed30b5e671f8f7823652d7cecc51aa89226de46"
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+ "gitHead": "2c6897f1fa732b1db5b094d1dca197e333e95319"
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  }
@@ -1,45 +0,0 @@
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- export declare function renderReactionData(self: any): {
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- rendererType: any;
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- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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- renderProps: any;
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- renderArgs: {
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- assemblyName: string;
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- adapterConfig: any;
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- rendererType: any;
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- regions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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- blockDefinitions: any;
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- sessionId: string;
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- timeout: number;
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- };
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- };
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- export declare function renderReactionEffect(props: any, signal: AbortSignal | undefined, self: any): Promise<{
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- message: any;
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- html?: undefined;
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- data?: undefined;
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- reactElement?: undefined;
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- renderingComponent?: undefined;
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- } | {
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- html: any;
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- data: any;
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- reactElement: any;
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- renderingComponent: any;
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- message?: undefined;
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- }>;
@@ -1,45 +0,0 @@
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- export declare function renderReactionData(self: any): {
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- rendererType: any;
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- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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- renderProps: any;
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- renderArgs: {
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- assemblyName: string;
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- adapterConfig: any;
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- rendererType: any;
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- regions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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- blockDefinitions: any;
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- sessionId: string;
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- timeout: number;
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- };
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- };
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- export declare function renderReactionEffect(props: any, signal: AbortSignal | undefined, self: any): Promise<{
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- message: any;
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- html?: undefined;
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- data?: undefined;
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- reactElement?: undefined;
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- renderingComponent?: undefined;
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- } | {
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- html: any;
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- data: any;
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- reactElement: any;
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- renderingComponent: any;
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- message?: undefined;
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- }>;