@jbrowse/plugin-circular-view 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (83) hide show
  1. package/dist/BaseChordDisplay/components/BaseChordDisplay.d.ts +1 -2
  2. package/dist/BaseChordDisplay/components/BaseChordDisplay.js +8 -7
  3. package/dist/BaseChordDisplay/components/DisplayError.d.ts +1 -2
  4. package/dist/BaseChordDisplay/components/DisplayError.js +2 -11
  5. package/dist/BaseChordDisplay/components/Loading.d.ts +1 -2
  6. package/dist/BaseChordDisplay/components/Loading.js +4 -34
  7. package/dist/BaseChordDisplay/{models/configSchema.d.ts → configSchema.d.ts} +0 -3
  8. package/dist/BaseChordDisplay/{models/configSchema.js → configSchema.js} +1 -10
  9. package/dist/BaseChordDisplay/index.d.ts +2 -2
  10. package/dist/BaseChordDisplay/index.js +2 -2
  11. package/{esm/BaseChordDisplay/models → dist/BaseChordDisplay}/model.d.ts +12 -54
  12. package/dist/BaseChordDisplay/{models/model.js → model.js} +31 -94
  13. package/dist/BaseChordDisplay/renderReaction.d.ts +27 -0
  14. package/dist/BaseChordDisplay/{models/renderReaction.js → renderReaction.js} +5 -13
  15. package/dist/CircularView/components/CircularView.d.ts +2 -3
  16. package/dist/CircularView/components/CircularView.js +22 -31
  17. package/dist/CircularView/components/Controls.d.ts +2 -3
  18. package/dist/CircularView/components/Controls.js +33 -70
  19. package/dist/CircularView/components/ExportSvgDialog.d.ts +2 -3
  20. package/dist/CircularView/components/ExportSvgDialog.js +32 -67
  21. package/dist/CircularView/components/ImportForm.d.ts +2 -3
  22. package/dist/CircularView/components/ImportForm.js +12 -42
  23. package/dist/CircularView/components/Ruler.d.ts +3 -4
  24. package/dist/CircularView/components/Ruler.js +18 -37
  25. package/dist/CircularView/index.d.ts +1 -1
  26. package/dist/CircularView/index.js +18 -8
  27. package/dist/CircularView/{models/model.d.ts → model.d.ts} +9 -158
  28. package/dist/CircularView/{models/model.js → model.js} +25 -224
  29. package/dist/CircularView/{models/slices.d.ts → slices.d.ts} +1 -1
  30. package/dist/CircularView/svgcomponents/SVGBackground.d.ts +1 -2
  31. package/dist/CircularView/svgcomponents/SVGBackground.js +3 -6
  32. package/dist/CircularView/svgcomponents/SVGCircularView.d.ts +1 -1
  33. package/dist/CircularView/svgcomponents/SVGCircularView.js +5 -17
  34. package/dist/CircularView/{models/viewportVisibleRegion.js → viewportVisibleRegion.js} +0 -70
  35. package/dist/LaunchCircularView/index.d.ts +1 -1
  36. package/dist/LaunchCircularView/index.js +1 -3
  37. package/dist/index.d.ts +3 -3
  38. package/dist/index.js +5 -7
  39. package/esm/BaseChordDisplay/components/BaseChordDisplay.d.ts +1 -2
  40. package/esm/BaseChordDisplay/components/BaseChordDisplay.js +8 -7
  41. package/esm/BaseChordDisplay/components/DisplayError.d.ts +1 -2
  42. package/esm/BaseChordDisplay/components/DisplayError.js +2 -8
  43. package/esm/BaseChordDisplay/components/Loading.d.ts +1 -2
  44. package/esm/BaseChordDisplay/components/Loading.js +4 -11
  45. package/esm/BaseChordDisplay/{models/configSchema.d.ts → configSchema.d.ts} +0 -3
  46. package/esm/BaseChordDisplay/{models/configSchema.js → configSchema.js} +1 -10
  47. package/esm/BaseChordDisplay/index.d.ts +2 -2
  48. package/esm/BaseChordDisplay/index.js +2 -2
  49. package/{dist/BaseChordDisplay/models → esm/BaseChordDisplay}/model.d.ts +12 -54
  50. package/esm/BaseChordDisplay/{models/model.js → model.js} +32 -92
  51. package/esm/BaseChordDisplay/renderReaction.d.ts +27 -0
  52. package/esm/BaseChordDisplay/{models/renderReaction.js → renderReaction.js} +5 -10
  53. package/esm/CircularView/components/CircularView.d.ts +2 -3
  54. package/esm/CircularView/components/CircularView.js +22 -31
  55. package/esm/CircularView/components/Controls.d.ts +2 -3
  56. package/esm/CircularView/components/Controls.js +33 -47
  57. package/esm/CircularView/components/ExportSvgDialog.d.ts +2 -3
  58. package/esm/CircularView/components/ExportSvgDialog.js +32 -44
  59. package/esm/CircularView/components/ImportForm.d.ts +2 -3
  60. package/esm/CircularView/components/ImportForm.js +12 -19
  61. package/esm/CircularView/components/Ruler.d.ts +3 -4
  62. package/esm/CircularView/components/Ruler.js +19 -35
  63. package/esm/CircularView/index.d.ts +1 -1
  64. package/esm/CircularView/index.js +1 -1
  65. package/esm/CircularView/{models/model.d.ts → model.d.ts} +9 -158
  66. package/esm/CircularView/{models/model.js → model.js} +9 -218
  67. package/esm/CircularView/{models/slices.d.ts → slices.d.ts} +1 -1
  68. package/esm/CircularView/{models/slices.js → slices.js} +1 -1
  69. package/esm/CircularView/svgcomponents/SVGBackground.d.ts +1 -2
  70. package/esm/CircularView/svgcomponents/SVGBackground.js +3 -3
  71. package/esm/CircularView/svgcomponents/SVGCircularView.d.ts +1 -1
  72. package/esm/CircularView/svgcomponents/SVGCircularView.js +5 -17
  73. package/esm/CircularView/{models/viewportVisibleRegion.js → viewportVisibleRegion.js} +0 -70
  74. package/esm/LaunchCircularView/index.d.ts +1 -1
  75. package/esm/LaunchCircularView/index.js +1 -3
  76. package/esm/index.d.ts +3 -3
  77. package/esm/index.js +3 -5
  78. package/package.json +2 -3
  79. package/dist/BaseChordDisplay/models/renderReaction.d.ts +0 -45
  80. package/esm/BaseChordDisplay/models/renderReaction.d.ts +0 -45
  81. /package/dist/CircularView/{models/slices.js → slices.js} +0 -0
  82. /package/dist/CircularView/{models/viewportVisibleRegion.d.ts → viewportVisibleRegion.d.ts} +0 -0
  83. /package/esm/CircularView/{models/viewportVisibleRegion.d.ts → viewportVisibleRegion.d.ts} +0 -0
@@ -1,10 +1,11 @@
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- import React from 'react';
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- import PluginManager from '@jbrowse/core/PluginManager';
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- import { SnapshotOrInstance, Instance } from 'mobx-state-tree';
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- import { Region } from '@jbrowse/core/util/types/mst';
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- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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- import { MenuItem } from '@jbrowse/core/ui';
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- import { SliceRegion } from './slices';
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+ import type React from 'react';
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+ import type { SliceRegion } from './slices';
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+ import type PluginManager from '@jbrowse/core/PluginManager';
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+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
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+ import type { MenuItem } from '@jbrowse/core/ui';
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+ import type { Region as IRegion } from '@jbrowse/core/util/types';
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+ import type { Region } from '@jbrowse/core/util/types/mst';
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+ import type { Instance, SnapshotOrInstance } from 'mobx-state-tree';
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  export interface ExportSvgOptions {
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  rasterizeLayers?: boolean;
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  filename?: string;
@@ -13,11 +14,6 @@ export interface ExportSvgOptions {
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  }>;
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  themeName?: string;
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  }
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- /**
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- * #stateModel CircularView
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- * extends
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- * - [BaseViewModel](../baseviewmodel)
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- */
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  declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -32,16 +28,7 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  lockedFitToWindow: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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  disableImportForm: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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  height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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- displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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- refName: import("mobx-state-tree").ISimpleType<string>;
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- start: import("mobx-state-tree").ISimpleType<number>;
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- end: import("mobx-state-tree").ISimpleType<number>;
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- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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- } & {
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- assemblyName: import("mobx-state-tree").ISimpleType<string>;
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- }, {
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- setRefName(newRefName: string): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<IRegion[], IRegion[], IRegion[]>, [undefined]>;
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  scrollX: import("mobx-state-tree").IType<number | undefined, number, number>;
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  scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
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  minimumRadiusPx: import("mobx-state-tree").IType<number | undefined, number, number>;
@@ -63,192 +50,56 @@ declare function stateModelFactory(pluginManager: PluginManager): import("mobx-s
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  volatileWidth: number | undefined;
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  error: unknown;
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  } & {
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- /**
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- * #getter
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- */
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  readonly width: number;
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- /**
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- * #getter
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- */
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  readonly visibleSection: {
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  rho: [number, number];
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  theta: [number, number];
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  };
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- /**
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- * #getter
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- */
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  readonly circumferencePx: number;
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- /**
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- * #getter
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- */
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  readonly radiusPx: number;
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- /**
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- * #getter
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- */
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  readonly bpPerRadian: number;
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- /**
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- * #getter
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- */
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  readonly pxPerRadian: number;
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- /**
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- * #getter
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- */
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  readonly centerXY: [number, number];
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- /**
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- * #getter
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- */
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  readonly totalBp: number;
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- /**
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- * #getter
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- */
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  readonly maximumRadiusPx: number;
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- /**
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- * #getter
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- */
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  readonly maxBpPerPx: number;
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- /**
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- * #getter
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- */
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  readonly minBpPerPx: number;
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- /**
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- * #getter
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- */
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  readonly atMaxBpPerPx: boolean;
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- /**
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- * #getter
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- */
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  readonly atMinBpPerPx: boolean;
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- /**
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- * #getter
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- */
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  readonly tooSmallToLock: boolean;
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- /**
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- * #getter
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- */
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  readonly figureDimensions: [number, number];
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- /**
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- * #getter
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- */
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  readonly figureWidth: number;
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- /**
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- * #getter
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- */
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  readonly figureHeight: number;
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- /**
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- * #getter
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- * this is displayedRegions, post-processed to elide regions that are too
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- * small to see reasonably
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- */
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  readonly elidedRegions: SliceRegion[];
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- /**
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- * #getter
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- */
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  readonly assemblyNames: string[];
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- /**
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- * #getter
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- */
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  readonly initialized: boolean;
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  } & {
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- /**
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- * #getter
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- */
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  readonly staticSlices: import("./slices").Slice[];
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  } & {
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- /**
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- * #getter
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- */
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  readonly visibleStaticSlices: import("./slices").Slice[];
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  } & {
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- /**
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- * #action
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- */
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  setWidth(newWidth: number): number;
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- /**
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- * #action
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- */
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  setHeight(newHeight: number): number;
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- /**
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- * #action
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- */
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  resizeHeight(distance: number): number;
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- /**
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- * #action
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- */
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  resizeWidth(distance: number): number;
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- /**
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- * #action
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- */
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  rotateClockwiseButton(): void;
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- /**
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- * #action
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- */
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  rotateCounterClockwiseButton(): void;
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- /**
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- * #action
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- */
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  rotateClockwise(distance?: number): void;
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- /**
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- * #action
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- */
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  rotateCounterClockwise(distance?: number): void;
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- /**
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- * #action
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- */
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  zoomInButton(): void;
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- /**
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- * #action
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- */
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  zoomOutButton(): void;
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- /**
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- * #action
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- */
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  setBpPerPx(newVal: number): void;
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- /**
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- * #action
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- */
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  setModelViewWhenAdjust(secondCondition: boolean): void;
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- /**
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- * #action
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- */
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  setDisplayedRegions(regions: SnapshotOrInstance<typeof Region>[]): void;
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- /**
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- * #action
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- */
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  activateTrackSelector(): import("@jbrowse/core/util").Widget;
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- /**
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- * #action
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- */
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  toggleTrack(trackId: string): boolean;
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- /**
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- * #action
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- */
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  setError(error: unknown): void;
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- /**
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- * #action
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- */
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  showTrack(trackId: string, initialSnapshot?: {}): void;
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- /**
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- * #action
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- */
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  addTrackConf(configuration: AnyConfigurationModel, initialSnapshot?: {}): void;
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- /**
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- * #action
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- */
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  hideTrack(trackId: string): number;
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- /**
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- * #action
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- */
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  toggleFitToWindowLock(): boolean;
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- /**
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- * #action
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- * creates an svg export and save using FileSaver
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- */
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  exportSvg(opts?: ExportSvgOptions): Promise<void>;
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  } & {
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- /**
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- * #method
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- * return the view menu items
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- */
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  menuItems(): MenuItem[];
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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  export type CircularViewStateModel = ReturnType<typeof stateModelFactory>;