@jbrowse/plugin-circular-view 1.7.11 → 2.1.0

package/dist/CircularView/models/CircularView.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"CircularView.js","sourceRoot":"","sources":["../../../src/CircularView/models/CircularView.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AACA,mDAQwB;AACxB,oDAAqD;AACrD,6BAAkC;AAClC,6DAGoC;AAEpC,2CAI2B;AAC3B,qEAA0E;AAC1E,mCAAgE;AAEhE,iEAAgE;AAEhE,SAAwB,YAAY,CAAC,aAA4B;IAC/D,IAAM,SAAS,GAAG,EAAE,CAAA;IACpB,IAAM,QAAQ,GAAG,GAAG,CAAA;IACpB,IAAM,aAAa,GAAG,GAAG,CAAA;IACzB,OAAO,uBAAK,CAAC,OAAO,CAClB,sBAAa,EACb,uBAAK;SACF,KAAK,CAAC,cAAc,EAAE;QACrB,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,cAAc,CAAC;QACnC,aAAa,EAAE,CAAC,IAAI,CAAC,EAAE,GAAG,CAAC;QAC3B,OAAO,EAAE,OAAO;QAChB,MAAM,EAAE,uBAAK,CAAC,KAAK,CACjB,aAAa,CAAC,gBAAgB,CAAC,OAAO,EAAE,YAAY,CAAC,CACtD;QAED,wBAAwB,EAAE,KAAK;QAC/B,uBAAuB,EAAE,KAAK;QAC9B,iBAAiB,EAAE,IAAI;QACvB,iBAAiB,EAAE,KAAK;QAExB,MAAM,EAAE,uBAAK,CAAC,QAAQ,CACpB,uBAAK,CAAC,UAAU,CAAC,aAAa,EAAE,uBAAK,CAAC,MAAM,EAAE,UAAA,CAAC,IAAI,OAAA,CAAC,IAAI,SAAS,EAAd,CAAc,CAAC,EAClE,aAAa,CACd;QACD,eAAe,EAAE,EAAE;QACnB,SAAS,EAAE,EAAE;QACb,SAAS,EAAE,EAAE;QACb,eAAe,EAAE,GAAG;QACpB,eAAe,EAAE,CAAC;QAClB,iBAAiB,EAAE,EAAE;QACrB,gBAAgB,EAAE,uBAAK,CAAC,KAAK,CAAC,YAAM,CAAC;QACrC,OAAO,EAAE,CAAC;QACV,OAAO,EAAE,CAAC;QACV,iBAAiB,EAAE,cAAc;KAClC,CAAC;SACD,QAAQ,CAAC,cAAM,OAAA,CAAC;QACf,KAAK,EAAE,CAAC;KACT,CAAC,EAFc,CAEd,CAAC;SACF,KAAK,CAAC,UAAA,IAAI,IAAI,OAAA,CAAC;QACd,IAAI,YAAY;YACd,OAAO,IAAA,8BAAqB,EAAC,IAAI,CAAC,CAAA;QACpC,CAAC;QACD,IAAI,mBAAmB;YACrB,OAAO,IAAI,CAAC,YAAY,CAAC,MAAM,CAAC,uBAAc,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAA;QAClE,CAAC;QACD,IAAI,cAAc;YAChB,OAAO,IAAA,8CAAsB,EAC3B;gBACE,IAAI,CAAC,OAAO;gBACZ,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,KAAK;gBACzB,IAAI,CAAC,OAAO;gBACZ,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,MAAM;aAC3B,EACD,IAAI,CAAC,QAAQ,EACb,IAAI,CAAC,QAAQ,CACd,CAAA;QACH,CAAC;QACD,IAAI,eAAe;;YACjB,IAAI,QAAQ,GAAG,CAAC,CAAA;;gBAChB,KAAgB,IAAA,KAAA,SAAA,IAAI,CAAC,aAAa,CAAA,gBAAA,4BAAE;oBAA/B,IAAM,CAAC,WAAA;oBACV,QAAQ,IAAI,CAAC,CAAC,OAAO,CAAA;iBACtB;;;;;;;;;YACD,OAAO,CACL,QAAQ,GAAG,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,aAAa,CAAC,MAAM,CACrE,CAAA;QACH,CAAC;QACD,IAAI,QAAQ;YACV,OAAO,IAAI,CAAC,eAAe,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;QAC7C,CAAC;QACD,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAA;QACrC,CAAC;QACD,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,QAAQ,CAAA;QACtB,CAAC;QACD,IAAI,QAAQ;YACV,OAAO;gBACL,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,SAAS;gBAC9B,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,SAAS;aAC/B,CAAA;QACH,CAAC;QACD,IAAI,OAAO;;YACT,IAAI,KAAK,GAAG,CAAC,CAAA;;gBACb,KAAqB,IAAA,KAAA,SAAA,IAAI,CAAC,gBAAgB,CAAA,gBAAA,4BAAE;oBAAvC,IAAM,MAAM,WAAA;oBACf,KAAK,IAAI,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAA;iBACnC;;;;;;;;;YACD,OAAO,KAAK,CAAA;QACd,CAAC;QACD,IAAI,eAAe;YACjB,OAAO,IAAI,CAAC,iBAAiB;gBAC3B,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,eAAe;gBAC9D,CAAC,CAAC,OAAO,CAAA;QACb,CAAC;QACD,IAAI,UAAU;YACZ,IAAM,kBAAkB,GAAG,CAAC,GAAG,IAAI,CAAC,EAAE,GAAG,IAAI,CAAC,eAAe,CAAA;YAC7D,OAAO,IAAI,CAAC,OAAO,GAAG,kBAAkB,CAAA;QAC1C,CAAC;QACD,IAAI,UAAU;YACZ,wEAAwE;YACxE,IAAM,kBAAkB,GAAG,CAAC,GAAG,IAAI,CAAC,EAAE,GAAG,IAAI,CAAC,eAAe,CAAA;YAC7D,OAAO,IAAA,YAAK,EACV,IAAI,CAAC,OAAO,GAAG,kBAAkB,EACjC,YAAY,EACZ,IAAI,CAAC,UAAU,CAChB,CAAA;QACH,CAAC;QACD,IAAI,YAAY;YACd,OAAO,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,UAAU,CAAA;QACxC,CAAC;QACD,IAAI,YAAY;YACd,OAAO,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,UAAU,CAAA;QACxC,CAAC;QACD,IAAI,cAAc;YAChB,OAAO,IAAI,CAAC,UAAU,IAAI,YAAY,CAAA;QACxC,CAAC;QACD,IAAI,gBAAgB;YAClB,OAAO;gBACL,IAAI,CAAC,QAAQ,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS;gBACtC,IAAI,CAAC,QAAQ,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS;aACvC,CAAA;QACH,CAAC;QACD,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAA;QACjC,CAAC;QACD,IAAI,YAAY;YACd,OAAO,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAA;QACjC,CAAC;QACD,8CAA8C;QAC9C,qDAAqD;QACrD,IAAI,aAAa;YACf,8DAA8D;YAC9D,IAAM,OAAO,GAAU,EAAE,CAAA;YACzB,IAAI,CAAC,gBAAgB,CAAC,OAAO,CAAC,UAAA,MAAM;gBAClC,IAAM,OAAO,GAAG,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAA;gBACzC,IAAM,OAAO,GAAG,OAAO,GAAG,IAAI,CAAC,OAAO,CAAA;gBACtC,IAAI,OAAO,GAAG,IAAI,CAAC,eAAe,EAAE;oBAClC,0DAA0D;oBAC1D,IAAM,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;oBAC/C,IAAI,WAAW,IAAI,WAAW,CAAC,MAAM,EAAE;wBACrC,WAAW,CAAC,OAAO,CAAC,IAAI,cAAM,MAAM,EAAG,CAAA;wBACvC,WAAW,CAAC,OAAO,IAAI,OAAO,CAAA;qBAC/B;yBAAM;wBACL,OAAO,CAAC,IAAI,CAAC;4BACX,MAAM,EAAE,IAAI;4BACZ,OAAO,SAAA;4BACP,OAAO,EAAE,cAAM,MAAM,EAAG;yBACzB,CAAC,CAAA;qBACH;iBACF;qBAAM;oBACL,gCAAgC;oBAChC,OAAO,CAAC,IAAI,uBAAM,MAAM,KAAE,OAAO,SAAA,IAAG,CAAA;iBACrC;YACH,CAAC,CAAC,CAAA;YAEF,oCAAoC;YACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;gBAC1C,IAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAA;gBACpB,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;oBACtC,OAAO,CAAC,CAAC,MAAM,CAAA;oBACf,OAAO,CAAC,CAAC,CAAC,yBAAQ,CAAC,GAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAE,CAAA;iBACvC;aACF;YACD,OAAO,OAAO,CAAA;QAChB,CAAC;QAED,IAAI,aAAa;YACf,IAAM,aAAa,GAAa,EAAE,CAAA;YAClC,IAAI,CAAC,gBAAgB,CAAC,OAAO,CAAC,UAAA,eAAe;gBAC3C,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,eAAe,CAAC,YAAY,CAAC,EAAE;oBACzD,aAAa,CAAC,IAAI,CAAC,eAAe,CAAC,YAAY,CAAC,CAAA;iBACjD;YACH,CAAC,CAAC,CAAA;YACF,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package/dist/CircularView/models/slices.js

@@ -1,111 +1,97 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.Slice = void 0;
-exports.calculateStaticSlices = calculateStaticSlices;
-exports.sliceIsVisible = sliceIsVisible;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _util = require("@jbrowse/core/util");
-
-var _viewportVisibleRegion = require("./viewportVisibleRegion");
-
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
-
-function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
-
-function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
-
-var Slice = /*#__PURE__*/function () {
-  function Slice(view, region, currentRadianOffset, radianWidth) {
-    (0, _classCallCheck2.default)(this, Slice);
-    this.region = region;
-    this.radianWidth = radianWidth;
-    (0, _defineProperty2.default)(this, "key", void 0);
-    (0, _defineProperty2.default)(this, "offsetRadians", void 0);
-    (0, _defineProperty2.default)(this, "startRadians", void 0);
-    (0, _defineProperty2.default)(this, "endRadians", void 0);
-    (0, _defineProperty2.default)(this, "bpPerRadian", void 0);
-    (0, _defineProperty2.default)(this, "flipped", void 0);
-    var bpPerRadian = view.bpPerRadian;
-    this.key = (0, _util.assembleLocString)(region);
-    this.offsetRadians = currentRadianOffset;
-    this.bpPerRadian = bpPerRadian;
-    this.flipped = false;
-    this.startRadians = this.offsetRadians;
-    this.endRadians = region.widthBp / this.bpPerRadian + this.offsetRadians;
-    Object.freeze(this);
-  }
-
-  (0, _createClass2.default)(Slice, [{
-    key: "bpToXY",
-    value: function bpToXY(bp, radiusPx) {
-      var offsetBp;
-
-      if (this.region.elided) {
-        offsetBp = this.region.widthBp / 2;
-      } else if (this.flipped) {
-        offsetBp = this.region.end - bp;
-      } else {
-        offsetBp = bp - this.region.start;
-      }
-
-      var totalRadians = offsetBp / this.bpPerRadian + this.offsetRadians;
-      return (0, _util.polarToCartesian)(radiusPx, totalRadians);
+var __values = (this && this.__values) || function(o) {
+    var s = typeof Symbol === "function" && Symbol.iterator, m = s && o[s], i = 0;
+    if (m) return m.call(o);
+    if (o && typeof o.length === "number") return {
+        next: function () {
+            if (o && i >= o.length) o = void 0;
+            return { value: o && o[i++], done: !o };
+        }
+    };
+    throw new TypeError(s ? "Object is not iterable." : "Symbol.iterator is not defined.");
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
     }
-  }, {
-    key: "toJSON",
-    value: function toJSON() {
-      return (0, _util.objectFromEntries)(Object.entries(this));
+    return ar;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.sliceIsVisible = exports.calculateStaticSlices = exports.Slice = void 0;
+var util_1 = require("@jbrowse/core/util");
+var viewportVisibleRegion_1 = require("./viewportVisibleRegion");
+var Slice = /** @class */ (function () {
+    function Slice(view, region, currentRadianOffset, radianWidth) {
+        this.region = region;
+        this.radianWidth = radianWidth;
+        var bpPerRadian = view.bpPerRadian;
+        this.key = (0, util_1.assembleLocString)(region);
+        this.offsetRadians = currentRadianOffset;
+        this.bpPerRadian = bpPerRadian;
+        this.flipped = false;
+        this.startRadians = this.offsetRadians;
+        this.endRadians = region.widthBp / this.bpPerRadian + this.offsetRadians;
+        Object.freeze(this);
     }
-  }]);
-  return Slice;
-}(); // eslint-disable-next-line @typescript-eslint/no-explicit-any
-
-
+    Slice.prototype.bpToXY = function (bp, radiusPx) {
+        var offsetBp;
+        if (this.region.elided) {
+            offsetBp = this.region.widthBp / 2;
+        }
+        else if (this.flipped) {
+            offsetBp = this.region.end - bp;
+        }
+        else {
+            offsetBp = bp - this.region.start;
+        }
+        var totalRadians = offsetBp / this.bpPerRadian + this.offsetRadians;
+        return (0, util_1.polarToCartesian)(radiusPx, totalRadians);
+    };
+    Slice.prototype.toJSON = function () {
+        return Object.fromEntries(Object.entries(this));
+    };
+    return Slice;
+}());
 exports.Slice = Slice;
-
+// eslint-disable-next-line @typescript-eslint/no-explicit-any
 function calculateStaticSlices(self) {
-  var slices = [];
-  var currentRadianOffset = 0;
-
-  var _iterator = _createForOfIteratorHelper(self.elidedRegions),
-      _step;
-
-  try {
-    for (_iterator.s(); !(_step = _iterator.n()).done;) {
-      var _region = _step.value;
-
-      var _radianWidth = _region.widthBp / self.bpPerRadian + self.spacingPx / self.pxPerRadian;
-
-      slices.push(new Slice(self, _region, currentRadianOffset, _radianWidth));
-      currentRadianOffset += _radianWidth;
+    var e_1, _a;
+    var slices = [];
+    var currentRadianOffset = 0;
+    try {
+        for (var _b = __values(self.elidedRegions), _c = _b.next(); !_c.done; _c = _b.next()) {
+            var region = _c.value;
+            var radianWidth = region.widthBp / self.bpPerRadian + self.spacingPx / self.pxPerRadian;
+            slices.push(new Slice(self, region, currentRadianOffset, radianWidth));
+            currentRadianOffset += radianWidth;
+        }
     }
-  } catch (err) {
-    _iterator.e(err);
-  } finally {
-    _iterator.f();
-  }
-
-  return slices;
-} // eslint-disable-next-line @typescript-eslint/no-explicit-any
-
-
+    catch (e_1_1) { e_1 = { error: e_1_1 }; }
+    finally {
+        try {
+            if (_c && !_c.done && (_a = _b.return)) _a.call(_b);
+        }
+        finally { if (e_1) throw e_1.error; }
+    }
+    return slices;
+}
+exports.calculateStaticSlices = calculateStaticSlices;
+// eslint-disable-next-line @typescript-eslint/no-explicit-any
 function sliceIsVisible(self, slice) {
-  var _self$visibleSection$ = (0, _slicedToArray2.default)(self.visibleSection.theta, 2),
-      visibleThetaMin = _self$visibleSection$[0],
-      visibleThetaMax = _self$visibleSection$[1];
-
-  return (0, _viewportVisibleRegion.thetaRangesOverlap)(slice.offsetRadians + self.offsetRadians, slice.radianWidth, visibleThetaMin, visibleThetaMax - visibleThetaMin);
-}
+    var 
+    // rho: visibleRhoRange,
+    _a = __read(self.visibleSection.theta, 2), visibleThetaMin = _a[0], visibleThetaMax = _a[1];
+    return (0, viewportVisibleRegion_1.thetaRangesOverlap)(slice.offsetRadians + self.offsetRadians, slice.radianWidth, visibleThetaMin, visibleThetaMax - visibleThetaMin);
+}
+exports.sliceIsVisible = sliceIsVisible;
+//# sourceMappingURL=slices.js.map

package/dist/CircularView/models/slices.js.map

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