@jbrowse/plugin-circular-view 1.7.11 → 2.1.0

package/dist/CircularView/models/slices.test.js

@@ -1,83 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _slices2 = require("./slices");
-
-test('one slice', function () {
-  var view = {
-    elidedRegions: [{
-      refName: 'toast',
-      start: 0,
-      end: 10000,
-      widthBp: 10000
-    }],
-    spacingPx: 5,
-    radiusPx: 1000,
-    totalBp: 10000,
-    bpPerRadian: 10000 / (2 * Math.PI),
-    pxPerRadian: 1000
-  };
-  var slices = (0, _slices2.calculateStaticSlices)(view); // console.log(slices)
-
-  expect(slices.length).toBe(1);
-
-  var _slices = (0, _slicedToArray2.default)(slices, 1),
-      slice = _slices[0]; // expect(slices).toMatchSnapshot()
-
-
-  expect(slice).toMatchSnapshot();
-});
-test('two slices', function () {
-  var view = {
-    elidedRegions: [{
-      refName: 'toast',
-      start: 0,
-      end: 10000,
-      widthBp: 10000
-    }, {
-      refName: 'teest',
-      start: 0,
-      end: 10000,
-      widthBp: 10000
-    }],
-    spacingPx: 5,
-    radiusPx: 1000,
-    pxPerRadian: 1000,
-    totalBp: 20000,
-    bpPerRadian: 20000 / (2 * Math.PI)
-  };
-  var slices = (0, _slices2.calculateStaticSlices)(view); // console.log(slices)
-
-  expect(slices.length).toBe(2);
-  expect(slices).toMatchSnapshot();
-});
-test('volvox', function () {
-  var totalBp = 50001 + 6079;
-  var view = {
-    elidedRegions: [{
-      refName: 'ctgA',
-      start: 0,
-      end: 50001,
-      assemblyName: 'volvox',
-      widthBp: 50001
-    }, {
-      refName: 'ctgB',
-      start: 0,
-      end: 6079,
-      assemblyName: 'volvox',
-      widthBp: 6079
-    }],
-    spacingPx: 5,
-    radiusPx: 1000,
-    pxPerRadian: 1000,
-    totalBp: totalBp,
-    bpPerRadian: totalBp / (2 * Math.PI)
-  };
-  var slices = (0, _slices2.calculateStaticSlices)(view); // console.log(slices)
-
-  expect(slices.length).toBe(2);
-  expect(slices).toMatchSnapshot();
-});

package/dist/CircularView/models/viewportVisibleRegion.test.js

@@ -1,130 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _viewportVisibleRegion = require("./viewportVisibleRegion");
-
-describe('viewportVisibleSection', function () {
-  // test('circle contained in viewport', () => {
-  //   const result = viewportVisibleSection([0, 1, 0, 1], [0.5, 0.5], 0.3)
-  //   expect(result).toEqual({ rho: [0, 0.3], theta: [0, 2 * Math.PI] })
-  // })
-  // test('viewport completely inside circle', () => {
-  //   const result = viewportVisibleSection([0, 1, 0, 1], [0.5, 0.5], 20)
-  //   expect(result.theta).toEqual([0, 2 * Math.PI])
-  //   expect(result.rho[0]).toEqual(0)
-  //   expect(result.rho[1]).toBeCloseTo(0.7071)
-  // })
-  // test('viewport on left half of circle', () => {
-  //   const result = viewportVisibleSection([200, 500, 0, 1000], [500, 500], 20)
-  //   expect(result).toEqual({
-  //     rho: [0, 20],
-  //     theta: [Math.PI / 2, 1.5 * Math.PI],
-  //   })
-  // })
-  // test('viewport on right half of circle', () => {
-  //   const result = viewportVisibleSection([200, 500, 0, 1000], [200, 500], 20)
-  //   expect(result).toEqual({
-  //     rho: [0, 20],
-  //     theta: [1.5 * Math.PI, 2.5 * Math.PI],
-  //   })
-  // })
-  // test('viewport corner in circle', () => {
-  //   const { theta, rho } = viewportVisibleSection(
-  //     [200, 500, 0, 700],
-  //     [199, 701],
-  //     100,
-  //   )
-  //   expect(rho).toEqual([1.4142135623730951, 100])
-  //   expect(theta[0]).toBeCloseTo(1.5 * Math.PI, 1)
-  //   expect(theta[1]).toBeCloseTo(2 * Math.PI, 1)
-  // })
-  // test('viewport on center right', () => {
-  //   const { theta, rho } = viewportVisibleSection(
-  //     [1102, 2153, 880, 1280],
-  //     [1068.8119697255406, 1068.8119697255406],
-  //     1048.8119697255406,
-  //   )
-  //   expect(theta[1]).toBeGreaterThan(2 * Math.PI)
-  //   expect(theta[1]).toBeLessThan(2.5 * Math.PI)
-  //   expect(theta[0]).toBeGreaterThan(1.5 * Math.PI)
-  //   expect(theta[0]).toBeLessThan(2 * Math.PI)
-  // })
-  // test('viewport on center right 2', () => {
-  //   const { theta, rho } = viewportVisibleSection(
-  //     [1816, 2937, 1074, 1474],
-  //     [1468.6015446723616, 1468.6015446723616],
-  //     1448.6015446723616,
-  //   )
-  //   expect(theta[1]).toBeGreaterThan(2 * Math.PI)
-  //   expect(theta[1]).toBeLessThan(2.5 * Math.PI)
-  //   expect(theta[0]).toBeGreaterThan(1.5 * Math.PI)
-  //   expect(theta[0]).toBeLessThan(2 * Math.PI)
-  // })
-  // test('viewport on lower center', () => {
-  //   const { theta, rho } = viewportVisibleSection(
-  //     [259, 1350, 1176, 1576],
-  //     [787.7952717090081, 787.7952717090081],
-  //     767.7952717090081,
-  //   )
-  //   expect(theta[1]).toBeGreaterThan(Math.PI / 2)
-  //   expect(theta[1]).toBeLessThan(Math.PI)
-  //   expect(theta[0]).toBeGreaterThan(0)
-  //   expect(theta[0]).toBeLessThan(Math.PI / 2)
-  // })
-  // test('viewport on upper center', () => {
-  //   const { theta, rho } = viewportVisibleSection(
-  //     [286, 1377, 0, 400],
-  //     [787.7952717090081, 787.7952717090081],
-  //     767.7952717090081,
-  //   )
-  //   expect(theta[1]).toBeGreaterThan(1.5 * Math.PI)
-  //   expect(theta[1]).toBeLessThan(2 * Math.PI)
-  //   expect(theta[0]).toBeGreaterThan(Math.PI)
-  //   expect(theta[0]).toBeLessThan(1.5 * Math.PI)
-  // })
-  test('viewport on upper center 2', function () {
-    // [180.48708681644143, 359.3411680673888] [4.6042679453532855, 541.6042679453533]
-    // see '~/Desktop/Screen Shot 2019-06-28 at 3.01.22 PM.png'
-    var _viewportVisibleSecti = (0, _viewportVisibleRegion.viewportVisibleSection)([0, 962, 157, 557], [561.6042679453533, 561.6042679453533], 541.6042679453533),
-        theta = _viewportVisibleSecti.theta;
-
-    expect(theta[1]).toBeGreaterThan(1.75 * Math.PI);
-    expect(theta[1]).toBeLessThan(2 * Math.PI);
-    expect(theta[0]).toBeGreaterThan(Math.PI);
-    expect(theta[0]).toBeLessThan(1.1 * Math.PI);
-  });
-});
-describe('cartesian to polar', function () {
-  ;
-  [[[-1, -1], [1.414, 180 + 45]], [[-1, 1], [1.414, 90 + 45]], [[1, 1], [1.414, 45]], [[1, -1], [1.414, 360 - 45]], [[0, 1], [1, 90]], [[0, -1], [1, 270]], [[-1, 0], [1, 180]], [[1, 0], [1, 0]]].forEach(function (testCase) {
-    var _testCase = (0, _slicedToArray2.default)(testCase, 2),
-        input = _testCase[0],
-        output = _testCase[1];
-
-    test("".concat(input, " -> ").concat(output), function () {
-      var result = _viewportVisibleRegion.cartesianToPolar.apply(void 0, (0, _toConsumableArray2.default)(input));
-
-      expect(result[0]).toBeCloseTo(output[0]);
-      expect(result[1] * 180 / Math.PI).toBeCloseTo(output[1]);
-    });
-  });
-});
-describe('theta overlap testing', function () {
-  ;
-  [[[0, 2 * Math.PI, 0, 2 * Math.PI], true], [[6.1, Math.PI / 2, 0, Math.PI / 2], true], [[6.1, Math.PI / 2, 0, 0.1], true], [[6.1, 0.1, 6.12, 0.05], true], [[-12, 0.1, -12.05, 0.05], false], [[-12, 0.1, -12.05, 0.06], true]].forEach(function (testCase) {
-    var _testCase2 = (0, _slicedToArray2.default)(testCase, 2),
-        input = _testCase2[0],
-        output = _testCase2[1];
-
-    test("".concat(input, " -> ").concat(output), function () {
-      var result = _viewportVisibleRegion.thetaRangesOverlap.apply(void 0, (0, _toConsumableArray2.default)(input));
-
-      expect(result).toBe(output);
-    });
-  });
-});