@jbrowse/plugin-alignments 2.4.0 → 2.4.1

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Files changed (112) hide show
  1. package/dist/BamAdapter/BamAdapter.js +2 -2
  2. package/dist/BamAdapter/BamAdapter.js.map +1 -1
  3. package/dist/BamAdapter/BamSlightlyLazyFeature.js +2 -2
  4. package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
  5. package/dist/CramAdapter/CramAdapter.js +2 -2
  6. package/dist/CramAdapter/CramAdapter.js.map +1 -1
  7. package/dist/CramAdapter/CramSlightlyLazyFeature.js +2 -2
  8. package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
  9. package/dist/CramAdapter/util.js +10 -10
  10. package/dist/CramAdapter/util.js.map +1 -1
  11. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
  12. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
  13. package/dist/LinearAlignmentsDisplay/models/model.d.ts +1 -3
  14. package/dist/LinearAlignmentsDisplay/models/model.js +3 -4
  15. package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -1
  16. package/dist/LinearPileupDisplay/index.d.ts +2 -3
  17. package/dist/LinearPileupDisplay/index.js +4 -2
  18. package/dist/LinearPileupDisplay/index.js.map +1 -1
  19. package/dist/LinearPileupDisplay/model.d.ts +7 -9
  20. package/dist/LinearPileupDisplay/model.js +4 -4
  21. package/dist/LinearPileupDisplay/model.js.map +1 -1
  22. package/dist/LinearReadArcsDisplay/model.d.ts +2 -2
  23. package/dist/LinearReadCloudDisplay/model.d.ts +2 -2
  24. package/dist/LinearSNPCoverageDisplay/models/model.d.ts +2 -2
  25. package/dist/MismatchParser/index.js +4 -6
  26. package/dist/MismatchParser/index.js.map +1 -1
  27. package/dist/NestedFrequencyTable.js +3 -13
  28. package/dist/NestedFrequencyTable.js.map +1 -1
  29. package/dist/PileupRPC/rpcMethods.d.ts +3 -4
  30. package/dist/PileupRPC/rpcMethods.js +6 -6
  31. package/dist/PileupRPC/rpcMethods.js.map +1 -1
  32. package/dist/PileupRenderer/PileupRenderer.d.ts +6 -4
  33. package/dist/PileupRenderer/PileupRenderer.js +30 -34
  34. package/dist/PileupRenderer/PileupRenderer.js.map +1 -1
  35. package/dist/PileupRenderer/components/PileupRendering.js +2 -2
  36. package/dist/PileupRenderer/components/PileupRendering.js.map +1 -1
  37. package/dist/PileupRenderer/configSchema.js +1 -1
  38. package/dist/PileupRenderer/configSchema.js.map +1 -1
  39. package/dist/PileupRenderer/sortUtil.js +5 -4
  40. package/dist/PileupRenderer/sortUtil.js.map +1 -1
  41. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
  42. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
  43. package/dist/index.d.ts +3 -5
  44. package/dist/index.js +6 -6
  45. package/dist/index.js.map +1 -1
  46. package/esm/BamAdapter/BamAdapter.js +2 -2
  47. package/esm/BamAdapter/BamAdapter.js.map +1 -1
  48. package/esm/BamAdapter/BamSlightlyLazyFeature.js +2 -2
  49. package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
  50. package/esm/CramAdapter/CramAdapter.js +2 -2
  51. package/esm/CramAdapter/CramAdapter.js.map +1 -1
  52. package/esm/CramAdapter/CramSlightlyLazyFeature.js +2 -2
  53. package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
  54. package/esm/CramAdapter/util.js +10 -10
  55. package/esm/CramAdapter/util.js.map +1 -1
  56. package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
  57. package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
  58. package/esm/LinearAlignmentsDisplay/models/model.d.ts +1 -3
  59. package/esm/LinearAlignmentsDisplay/models/model.js +3 -4
  60. package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -1
  61. package/esm/LinearPileupDisplay/index.d.ts +2 -3
  62. package/esm/LinearPileupDisplay/index.js +2 -1
  63. package/esm/LinearPileupDisplay/index.js.map +1 -1
  64. package/esm/LinearPileupDisplay/model.d.ts +7 -9
  65. package/esm/LinearPileupDisplay/model.js +4 -4
  66. package/esm/LinearPileupDisplay/model.js.map +1 -1
  67. package/esm/LinearReadArcsDisplay/model.d.ts +2 -2
  68. package/esm/LinearReadCloudDisplay/model.d.ts +2 -2
  69. package/esm/LinearSNPCoverageDisplay/models/model.d.ts +2 -2
  70. package/esm/MismatchParser/index.js +4 -6
  71. package/esm/MismatchParser/index.js.map +1 -1
  72. package/esm/NestedFrequencyTable.js +3 -13
  73. package/esm/NestedFrequencyTable.js.map +1 -1
  74. package/esm/PileupRPC/rpcMethods.d.ts +3 -4
  75. package/esm/PileupRPC/rpcMethods.js +3 -4
  76. package/esm/PileupRPC/rpcMethods.js.map +1 -1
  77. package/esm/PileupRenderer/PileupRenderer.d.ts +6 -4
  78. package/esm/PileupRenderer/PileupRenderer.js +30 -34
  79. package/esm/PileupRenderer/PileupRenderer.js.map +1 -1
  80. package/esm/PileupRenderer/components/PileupRendering.js +2 -2
  81. package/esm/PileupRenderer/components/PileupRendering.js.map +1 -1
  82. package/esm/PileupRenderer/configSchema.js +1 -1
  83. package/esm/PileupRenderer/configSchema.js.map +1 -1
  84. package/esm/PileupRenderer/sortUtil.js +5 -4
  85. package/esm/PileupRenderer/sortUtil.js.map +1 -1
  86. package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
  87. package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
  88. package/esm/index.d.ts +3 -5
  89. package/esm/index.js +3 -3
  90. package/esm/index.js.map +1 -1
  91. package/package.json +2 -2
  92. package/src/AlignmentsFeatureDetail/index.test.tsx +1 -1
  93. package/src/BamAdapter/BamAdapter.ts +2 -2
  94. package/src/BamAdapter/BamSlightlyLazyFeature.ts +2 -2
  95. package/src/CramAdapter/CramAdapter.ts +2 -2
  96. package/src/CramAdapter/CramSlightlyLazyFeature.ts +2 -2
  97. package/src/CramAdapter/util.ts +10 -10
  98. package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +2 -2
  99. package/src/LinearAlignmentsDisplay/models/configSchema.test.ts +1 -1
  100. package/src/LinearAlignmentsDisplay/models/model.tsx +3 -4
  101. package/src/LinearPileupDisplay/index.ts +2 -4
  102. package/src/LinearPileupDisplay/model.ts +4 -4
  103. package/src/LinearSNPCoverageDisplay/models/configSchema.test.ts +1 -1
  104. package/src/MismatchParser/index.ts +3 -5
  105. package/src/NestedFrequencyTable.ts +3 -11
  106. package/src/PileupRPC/rpcMethods.ts +3 -9
  107. package/src/PileupRenderer/PileupRenderer.ts +47 -61
  108. package/src/PileupRenderer/components/PileupRendering.tsx +2 -2
  109. package/src/PileupRenderer/configSchema.ts +1 -1
  110. package/src/PileupRenderer/sortUtil.ts +5 -4
  111. package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +14 -13
  112. package/src/index.ts +5 -10
package/src/index.ts CHANGED
@@ -14,12 +14,7 @@ import AlignmentsTrackF from './AlignmentsTrack'
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  import AlignmentsFeatureWidgetF from './AlignmentsFeatureDetail'
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  import PileupRPCMethodsF from './PileupRPC'
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  import GuessAlignmentsTypesF from './GuessAlignmentsTypes'
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- import LinearPileupDisplayF, {
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- linearPileupDisplayStateModelFactory,
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- linearPileupDisplayConfigSchemaFactory,
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- } from './LinearPileupDisplay'
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- import { LinearPileupDisplayModel } from './LinearPileupDisplay/model'
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- import * as MismatchParser from './MismatchParser'
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+ import LinearPileupDisplayF from './LinearPileupDisplay'
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  export default class AlignmentsPlugin extends Plugin {
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  name = 'AlignmentsPlugin'
@@ -46,8 +41,8 @@ export default class AlignmentsPlugin extends Plugin {
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  }
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42
 
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  export {
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- linearPileupDisplayConfigSchemaFactory,
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  linearPileupDisplayStateModelFactory,
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- MismatchParser,
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- }
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- export type { LinearPileupDisplayModel }
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+ linearPileupDisplayConfigSchemaFactory,
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+ } from './LinearPileupDisplay'
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+ export { type LinearPileupDisplayModel } from './LinearPileupDisplay/model'
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+ export * as MismatchParser from './MismatchParser'