npm - @jbrowse/plugin-alignments - Versions diffs - 2.4.0 → 2.4.1 - Mend

@jbrowse/plugin-alignments 2.4.0 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (112) hide show

package/dist/BamAdapter/BamAdapter.js +2 -2
package/dist/BamAdapter/BamAdapter.js.map +1 -1
package/dist/BamAdapter/BamSlightlyLazyFeature.js +2 -2
package/dist/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
package/dist/CramAdapter/CramAdapter.js +2 -2
package/dist/CramAdapter/CramAdapter.js.map +1 -1
package/dist/CramAdapter/CramSlightlyLazyFeature.js +2 -2
package/dist/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
package/dist/CramAdapter/util.js +10 -10
package/dist/CramAdapter/util.js.map +1 -1
package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
package/dist/LinearAlignmentsDisplay/models/model.d.ts +1 -3
package/dist/LinearAlignmentsDisplay/models/model.js +3 -4
package/dist/LinearAlignmentsDisplay/models/model.js.map +1 -1
package/dist/LinearPileupDisplay/index.d.ts +2 -3
package/dist/LinearPileupDisplay/index.js +4 -2
package/dist/LinearPileupDisplay/index.js.map +1 -1
package/dist/LinearPileupDisplay/model.d.ts +7 -9
package/dist/LinearPileupDisplay/model.js +4 -4
package/dist/LinearPileupDisplay/model.js.map +1 -1
package/dist/LinearReadArcsDisplay/model.d.ts +2 -2
package/dist/LinearReadCloudDisplay/model.d.ts +2 -2
package/dist/LinearSNPCoverageDisplay/models/model.d.ts +2 -2
package/dist/MismatchParser/index.js +4 -6
package/dist/MismatchParser/index.js.map +1 -1
package/dist/NestedFrequencyTable.js +3 -13
package/dist/NestedFrequencyTable.js.map +1 -1
package/dist/PileupRPC/rpcMethods.d.ts +3 -4
package/dist/PileupRPC/rpcMethods.js +6 -6
package/dist/PileupRPC/rpcMethods.js.map +1 -1
package/dist/PileupRenderer/PileupRenderer.d.ts +6 -4
package/dist/PileupRenderer/PileupRenderer.js +30 -34
package/dist/PileupRenderer/PileupRenderer.js.map +1 -1
package/dist/PileupRenderer/components/PileupRendering.js +2 -2
package/dist/PileupRenderer/components/PileupRendering.js.map +1 -1
package/dist/PileupRenderer/configSchema.js +1 -1
package/dist/PileupRenderer/configSchema.js.map +1 -1
package/dist/PileupRenderer/sortUtil.js +5 -4
package/dist/PileupRenderer/sortUtil.js.map +1 -1
package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
package/dist/index.d.ts +3 -5
package/dist/index.js +6 -6
package/dist/index.js.map +1 -1
package/esm/BamAdapter/BamAdapter.js +2 -2
package/esm/BamAdapter/BamAdapter.js.map +1 -1
package/esm/BamAdapter/BamSlightlyLazyFeature.js +2 -2
package/esm/BamAdapter/BamSlightlyLazyFeature.js.map +1 -1
package/esm/CramAdapter/CramAdapter.js +2 -2
package/esm/CramAdapter/CramAdapter.js.map +1 -1
package/esm/CramAdapter/CramSlightlyLazyFeature.js +2 -2
package/esm/CramAdapter/CramSlightlyLazyFeature.js.map +1 -1
package/esm/CramAdapter/util.js +10 -10
package/esm/CramAdapter/util.js.map +1 -1
package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +2 -2
package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map +1 -1
package/esm/LinearAlignmentsDisplay/models/model.d.ts +1 -3
package/esm/LinearAlignmentsDisplay/models/model.js +3 -4
package/esm/LinearAlignmentsDisplay/models/model.js.map +1 -1
package/esm/LinearPileupDisplay/index.d.ts +2 -3
package/esm/LinearPileupDisplay/index.js +2 -1
package/esm/LinearPileupDisplay/index.js.map +1 -1
package/esm/LinearPileupDisplay/model.d.ts +7 -9
package/esm/LinearPileupDisplay/model.js +4 -4
package/esm/LinearPileupDisplay/model.js.map +1 -1
package/esm/LinearReadArcsDisplay/model.d.ts +2 -2
package/esm/LinearReadCloudDisplay/model.d.ts +2 -2
package/esm/LinearSNPCoverageDisplay/models/model.d.ts +2 -2
package/esm/MismatchParser/index.js +4 -6
package/esm/MismatchParser/index.js.map +1 -1
package/esm/NestedFrequencyTable.js +3 -13
package/esm/NestedFrequencyTable.js.map +1 -1
package/esm/PileupRPC/rpcMethods.d.ts +3 -4
package/esm/PileupRPC/rpcMethods.js +3 -4
package/esm/PileupRPC/rpcMethods.js.map +1 -1
package/esm/PileupRenderer/PileupRenderer.d.ts +6 -4
package/esm/PileupRenderer/PileupRenderer.js +30 -34
package/esm/PileupRenderer/PileupRenderer.js.map +1 -1
package/esm/PileupRenderer/components/PileupRendering.js +2 -2
package/esm/PileupRenderer/components/PileupRendering.js.map +1 -1
package/esm/PileupRenderer/configSchema.js +1 -1
package/esm/PileupRenderer/configSchema.js.map +1 -1
package/esm/PileupRenderer/sortUtil.js +5 -4
package/esm/PileupRenderer/sortUtil.js.map +1 -1
package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js +10 -7
package/esm/SNPCoverageRenderer/SNPCoverageRenderer.js.map +1 -1
package/esm/index.d.ts +3 -5
package/esm/index.js +3 -3
package/esm/index.js.map +1 -1
package/package.json +2 -2
package/src/AlignmentsFeatureDetail/index.test.tsx +1 -1
package/src/BamAdapter/BamAdapter.ts +2 -2
package/src/BamAdapter/BamSlightlyLazyFeature.ts +2 -2
package/src/CramAdapter/CramAdapter.ts +2 -2
package/src/CramAdapter/CramSlightlyLazyFeature.ts +2 -2
package/src/CramAdapter/util.ts +10 -10
package/src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx +2 -2
package/src/LinearAlignmentsDisplay/models/configSchema.test.ts +1 -1
package/src/LinearAlignmentsDisplay/models/model.tsx +3 -4
package/src/LinearPileupDisplay/index.ts +2 -4
package/src/LinearPileupDisplay/model.ts +4 -4
package/src/LinearSNPCoverageDisplay/models/configSchema.test.ts +1 -1
package/src/MismatchParser/index.ts +3 -5
package/src/NestedFrequencyTable.ts +3 -11
package/src/PileupRPC/rpcMethods.ts +3 -9
package/src/PileupRenderer/PileupRenderer.ts +47 -61
package/src/PileupRenderer/components/PileupRendering.tsx +2 -2
package/src/PileupRenderer/configSchema.ts +1 -1
package/src/PileupRenderer/sortUtil.ts +5 -4
package/src/SNPCoverageRenderer/SNPCoverageRenderer.ts +14 -13
package/src/index.ts +5 -10

package/dist/PileupRenderer/components/PileupRendering.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"PileupRendering.js","sourceRoot":"","sources":["../../../src/PileupRenderer/components/PileupRendering.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA0D;AAE1D,yCAAoD;AACpD,6CAA6C;AAC7C,2CAAqC;AAGrC,4EAA4E;AAC5E,gBAAgB;AAChB,MAAM,aAAa,GAAG,GAAG,CAAA;AACzB,SAAS,eAAe,CAAC,KAUxB;IACC,MAAM,EACJ,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,MAAM,EACN,OAAO,EACP,OAAO,EACP,QAAQ,EACR,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,kBAAkB,EAAE,GAClE,YAAY,CAAA;IAEd,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;IACxB,MAAM,sBAAsB,GAAG,IAAA,cAAM,EAAoB,IAAI,CAAC,CAAA;IAC9D,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,wBAAwB,EAAE,2BAA2B,CAAC,GAC3D,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACjB,IAAA,iBAAS,EAAC,GAAG,EAAE;;QACb,MAAM,MAAM,GAAG,sBAAsB,CAAC,OAAO,CAAA;QAC7C,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACnC,IAAI,CAAC,GAAG,EAAE;YACR,OAAM;SACP;QACD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAA;QAChD,MAAM,YAAY,GAAG,iBAAiB;YACpC,CAAC,CAAC,MAAA,YAAY,CAAC,cAAc,6DAAG,QAAQ,EAAE,iBAAiB,CAAC;YAC5D,CAAC,CAAC,SAAS,CAAA;QACb,IAAI,YAAY,EAAE;YAChB,MAAM,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,GAAG,YAAY,CAAA;YACvD,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,eAAQ,EAAC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACpE,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAA;YAC/C,GAAG,CAAC,WAAW,GAAG,SAAS,CAAA;YAC3B,GAAG,CAAC,UAAU,GAAG,EAAE,CAAA;YACnB,GAAG,CAAC,QAAQ,GAAG,OAAO,CAAA;YACtB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,SAAS,CAAA;YAC3B,GAAG,CAAC,UAAU,CACZ,MAAM,GAAG,CAAC,EACV,OAAO,GAAG,CAAC,EACX,OAAO,GAAG,MAAM,GAAG,CAAC,EACpB,UAAU,GAAG,CAAC,CACf,CAAA;YACD,GAAG,CAAC,SAAS,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,EAAE,UAAU,CAAC,CAAA;SAC7D;QACD,MAAM,kBAAkB,GAAG,mBAAmB,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,EAAE,EAAE,CAAA,CAAA;QAC1E,MAAM,eAAe,GAAG,kBAAkB;YACxC,CAAC,CAAC,MAAA,YAAY,CAAC,cAAc,6DAAG,QAAQ,EAAE,kBAAkB,CAAC;YAC7D,CAAC,CAAC,SAAS,CAAA;QACb,IAAI,eAAe,EAAE;YACnB,MAAM,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,GAAG,eAAe,CAAA;YAC1D,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,eAAQ,EAAC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACpE,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAA;YAC/C,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;YACvB,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,EAAE,UAAU,CAAC,CAAA;SAC5D;IACH,CAAC,EAAE;QACD,OAAO;QACP,MAAM;QACN,QAAQ;QACR,iBAAiB;QACjB,YAAY;QACZ,mBAAmB;QACnB,kBAAkB;KACnB,CAAC,CAAA;IAEF,SAAS,WAAW,CAAC,KAAuB;QAC1C,cAAc,CAAC,IAAI,CAAC,CAAA;QACpB,2BAA2B,CAAC,KAAK,CAAC,CAAA;QAClC,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,SAAS,YAAY,CAAC,KAAuB;QAC3C,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,UAAU,CAAC,KAAuB;QACzC,gBAAgB,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QACnC,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB;QAC1C,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,SAAS,SAAS,CAAC,KAAuB;QACxC,cAAc,CAAC,KAAK,CAAC,CAAA;QACrB,gBAAgB,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;IACpC,CAAC;IAED,SAAS,OAAO,CAAC,KAAuB;QACtC,IAAI,CAAC,wBAAwB,EAAE;YAC7B,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,CAAA;SACjC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,KAAuB;QAC3C,gBAAgB,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QACnC,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,aAAa,CAAC,KAAuB;QAC5C,gBAAgB,CAAC,aAAa,EAAE,KAAK,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,SAAS,CAAC,KAAuB;QACxC,IAAI,WAAW,EAAE;YACf,2BAA2B,CAAC,IAAI,CAAC,CAAA;SAClC;QACD,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,MAAM,MAAM,GAAG,sBAAsB,CAAC,OAAO,CAAA;QAC7C,IAAI,MAAM,EAAE;YACV,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAA;YACpD,OAAO,GAAG,IAAI,CAAA;YACd,OAAO,GAAG,GAAG,CAAA;SACd;QACD,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,OAAO,CAAA;QACjC,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,OAAO,CAAA;QACjC,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,GAAG,OAAO,GAAG,EAAE,CAAA;QAE5C,MAAM,gBAAgB,GAAG,YAAY,CAAC,qBAAqB,CACzD,QAAQ,EACR,QAAQ,EACR,OAAO,CACR,CAAA;QAED,IAAI,WAAW,EAAE;YACf,WAAW,CAAC,KAAK,EAAE,gBAAgB,CAAC,CAAA;SACrC;IACH,CAAC;IAED,SAAS,gBAAgB,CAAC,WAAmB,EAAE,KAAuB;QACpE,~~aAAa~~;~~QACb~~,0DAA0D;QAC1D,MAAM,cAAc,GAAG,KAAK,CAAC,YAAY,WAAW,EAAE,CAAC,CAAA;QACvD,~~aAAa~~;~~QACb~~,0DAA0D;QAC1D,MAAM,aAAa,GAAG,KAAK,CAAC,KAAK,WAAW,EAAE,CAAC,CAAA;QAC/C,IAAI,cAAc,IAAI,mBAAmB,EAAE;YACzC,cAAc,CAAC,KAAK,EAAE,mBAAmB,CAAC,CAAA;SAC3C;aAAM,IAAI,aAAa,EAAE;YACxB,aAAa,CAAC,KAAK,EAAE,mBAAmB,CAAC,CAAA;SAC1C;IACH,CAAC;IAED,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IACpC,oEAAoE;IACpE,OAAO,CACL,uCACE,SAAS,EAAC,iBAAiB,iBACd,UACX,QAAQ,IAAI,OAAO;YACjB,CAAC,CAAC,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,IAAI,KAAI,EAAE,GAAG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,KAAI,EAAE,GAAG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,GAAG,KAAI,EAAE,EAAE;YACtE,CAAC,CAAC,QACN,EAAE,EACF,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE;QAE3D,8BAAC,sBAAiB,OACZ,KAAK,EACT,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAChD;QACF,yDACc,uBAAuB,EACnC,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,MAAM,GAAG,aAAa,EAC9B,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,EAChD,SAAS,EAAC,wBAAwB,EAClC,GAAG,EAAE,sBAAsB,EAC3B,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,EACxC,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,UAAU,EAAE,KAAK,CAAC,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,EACtC,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,EACxC,SAAS,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EACpC,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EACtC,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAChC,aAAa,EAAE,KAAK,CAAC,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EAC5C,OAAO,EAAE,GAAG,EAAE,GAAE,CAAC,EACjB,MAAM,EAAE,GAAG,EAAE,GAAE,CAAC,GAChB,CACE,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,eAAe,CAAC,CAAA"}
1	+ {"version":3,"file":"PileupRendering.js","sourceRoot":"","sources":["../../../src/PileupRenderer/components/PileupRendering.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA0D;AAE1D,yCAAoD;AACpD,6CAA6C;AAC7C,2CAAqC;AAGrC,4EAA4E;AAC5E,gBAAgB;AAChB,MAAM,aAAa,GAAG,GAAG,CAAA;AACzB,SAAS,eAAe,CAAC,KAUxB;IACC,MAAM,EACJ,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,MAAM,EACN,OAAO,EACP,OAAO,EACP,QAAQ,EACR,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,iBAAiB,EAAE,mBAAmB,EAAE,kBAAkB,EAAE,GAClE,YAAY,CAAA;IAEd,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;IACxB,MAAM,sBAAsB,GAAG,IAAA,cAAM,EAAoB,IAAI,CAAC,CAAA;IAC9D,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,wBAAwB,EAAE,2BAA2B,CAAC,GAC3D,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACjB,IAAA,iBAAS,EAAC,GAAG,EAAE;;QACb,MAAM,MAAM,GAAG,sBAAsB,CAAC,OAAO,CAAA;QAC7C,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACnC,IAAI,CAAC,GAAG,EAAE;YACR,OAAM;SACP;QACD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,CAAA;QAChD,MAAM,YAAY,GAAG,iBAAiB;YACpC,CAAC,CAAC,MAAA,YAAY,CAAC,cAAc,6DAAG,QAAQ,EAAE,iBAAiB,CAAC;YAC5D,CAAC,CAAC,SAAS,CAAA;QACb,IAAI,YAAY,EAAE;YAChB,MAAM,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,GAAG,YAAY,CAAA;YACvD,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,eAAQ,EAAC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACpE,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAA;YAC/C,GAAG,CAAC,WAAW,GAAG,SAAS,CAAA;YAC3B,GAAG,CAAC,UAAU,GAAG,EAAE,CAAA;YACnB,GAAG,CAAC,QAAQ,GAAG,OAAO,CAAA;YACtB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,SAAS,CAAA;YAC3B,GAAG,CAAC,UAAU,CACZ,MAAM,GAAG,CAAC,EACV,OAAO,GAAG,CAAC,EACX,OAAO,GAAG,MAAM,GAAG,CAAC,EACpB,UAAU,GAAG,CAAC,CACf,CAAA;YACD,GAAG,CAAC,SAAS,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,EAAE,UAAU,CAAC,CAAA;SAC7D;QACD,MAAM,kBAAkB,GAAG,mBAAmB,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,EAAE,EAAE,CAAA,CAAA;QAC1E,MAAM,eAAe,GAAG,kBAAkB;YACxC,CAAC,CAAC,MAAA,YAAY,CAAC,cAAc,6DAAG,QAAQ,EAAE,kBAAkB,CAAC;YAC7D,CAAC,CAAC,SAAS,CAAA;QACb,IAAI,eAAe,EAAE;YACnB,MAAM,CAAC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,GAAG,eAAe,CAAA;YAC1D,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,eAAQ,EAAC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACpE,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAA;YAC/C,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;YACvB,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,EAAE,UAAU,CAAC,CAAA;SAC5D;IACH,CAAC,EAAE;QACD,OAAO;QACP,MAAM;QACN,QAAQ;QACR,iBAAiB;QACjB,YAAY;QACZ,mBAAmB;QACnB,kBAAkB;KACnB,CAAC,CAAA;IAEF,SAAS,WAAW,CAAC,KAAuB;QAC1C,cAAc,CAAC,IAAI,CAAC,CAAA;QACpB,2BAA2B,CAAC,KAAK,CAAC,CAAA;QAClC,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,SAAS,YAAY,CAAC,KAAuB;QAC3C,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,UAAU,CAAC,KAAuB;QACzC,gBAAgB,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QACnC,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB;QAC1C,gBAAgB,CAAC,WAAW,EAAE,KAAK,CAAC,CAAA;IACtC,CAAC;IAED,SAAS,SAAS,CAAC,KAAuB;QACxC,cAAc,CAAC,KAAK,CAAC,CAAA;QACrB,gBAAgB,CAAC,SAAS,EAAE,KAAK,CAAC,CAAA;IACpC,CAAC;IAED,SAAS,OAAO,CAAC,KAAuB;QACtC,IAAI,CAAC,wBAAwB,EAAE;YAC7B,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,CAAA;SACjC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,KAAuB;QAC3C,gBAAgB,CAAC,UAAU,EAAE,KAAK,CAAC,CAAA;QACnC,gBAAgB,CAAC,YAAY,EAAE,KAAK,CAAC,CAAA;IACvC,CAAC;IAED,SAAS,aAAa,CAAC,KAAuB;QAC5C,gBAAgB,CAAC,aAAa,EAAE,KAAK,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,SAAS,CAAC,KAAuB;QACxC,IAAI,WAAW,EAAE;YACf,2BAA2B,CAAC,IAAI,CAAC,CAAA;SAClC;QACD,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,MAAM,MAAM,GAAG,sBAAsB,CAAC,OAAO,CAAA;QAC7C,IAAI,MAAM,EAAE;YACV,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAA;YACpD,OAAO,GAAG,IAAI,CAAA;YACd,OAAO,GAAG,GAAG,CAAA;SACd;QACD,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,OAAO,CAAA;QACjC,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,OAAO,CAAA;QACjC,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,GAAG,OAAO,GAAG,EAAE,CAAA;QAE5C,MAAM,gBAAgB,GAAG,YAAY,CAAC,qBAAqB,CACzD,QAAQ,EACR,QAAQ,EACR,OAAO,CACR,CAAA;QAED,IAAI,WAAW,EAAE;YACf,WAAW,CAAC,KAAK,EAAE,gBAAgB,CAAC,CAAA;SACrC;IACH,CAAC;IAED,SAAS,gBAAgB,CAAC,WAAmB,EAAE,KAAuB;QACpE,mBAAmB;QACnB,0DAA0D;QAC1D,MAAM,cAAc,GAAG,KAAK,CAAC,YAAY,WAAW,EAAE,CAAC,CAAA;QACvD,mBAAmB;QACnB,0DAA0D;QAC1D,MAAM,aAAa,GAAG,KAAK,CAAC,KAAK,WAAW,EAAE,CAAC,CAAA;QAC/C,IAAI,cAAc,IAAI,mBAAmB,EAAE;YACzC,cAAc,CAAC,KAAK,EAAE,mBAAmB,CAAC,CAAA;SAC3C;aAAM,IAAI,aAAa,EAAE;YACxB,aAAa,CAAC,KAAK,EAAE,mBAAmB,CAAC,CAAA;SAC1C;IACH,CAAC;IAED,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IACpC,oEAAoE;IACpE,OAAO,CACL,uCACE,SAAS,EAAC,iBAAiB,iBACd,UACX,QAAQ,IAAI,OAAO;YACjB,CAAC,CAAC,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,IAAI,KAAI,EAAE,GAAG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,KAAI,EAAE,GAAG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,GAAG,KAAI,EAAE,EAAE;YACtE,CAAC,CAAC,QACN,EAAE,EACF,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE;QAE3D,8BAAC,sBAAiB,OACZ,KAAK,EACT,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,GAChD;QACF,yDACc,uBAAuB,EACnC,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,MAAM,GAAG,aAAa,EAC9B,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,EAChD,SAAS,EAAC,wBAAwB,EAClC,GAAG,EAAE,sBAAsB,EAC3B,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,EACxC,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,UAAU,EAAE,KAAK,CAAC,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,EACtC,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,EACxC,SAAS,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EACpC,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,WAAW,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,EACtC,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAChC,aAAa,EAAE,KAAK,CAAC,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,EAC5C,OAAO,EAAE,GAAG,EAAE,GAAE,CAAC,EACjB,MAAM,EAAE,GAAG,EAAE,GAAE,CAAC,GAChB,CACE,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,eAAe,CAAC,CAAA"}

package/dist/PileupRenderer/configSchema.js CHANGED Viewed

@@ -45,7 +45,7 @@ const PileupRenderer = (0, configuration_1.ConfigurationSchema)('PileupRenderer'
     minSubfeatureWidth: {
         type: 'number',
         description: 'the minimum width in px for a pileup mismatch feature. use for increasing/decreasing mismatch marker widths when zoomed out, e.g. 0 or 1',
-        defaultValue: 0.7,
+        defaultValue: 1,
     },
     /**
      * #slot

package/dist/PileupRenderer/configSchema.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/PileupRenderer/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,qDAAuC;AAEvC;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,cAAc,GAAG,IAAA,mCAAmB,EACxC,gBAAgB,EAChB;IACE;;;OAGG;IACH,KAAK,EAAE;QACL,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,iDAAiD;QAC9D,YAAY,EAAE,MAAM;QACpB,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;IAED;;OAEG;IACH,eAAe,EAAE;QACf,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,iBAAiB,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;QAC/D,YAAY,EAAE,IAAI;QAClB,WAAW,EACT,oIAAoI;KACvI;IACD;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,aAAa,EAAE;YACtC,QAAQ;YACR,SAAS;YACT,UAAU;SACX,CAAC;QACF,WAAW,EAAE,2BAA2B;QACxC,YAAY,EAAE,QAAQ;KACvB;IACD;;OAEG;IACH,kBAAkB,EAAE;QAClB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,0IAA0I;QAC5I,YAAY,EAAE,~~GAAG~~;~~KAClB~~;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,qDAAqD;QAClE,YAAY,EAAE,IAAI;KACnB;IACD;;OAEG;IACH,eAAe,EAAE;QACf,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,oDAAoD;QACjE,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,kDAAkD;QAC/D,YAAY,EAAE,CAAC;QACf,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,iCAAiC;QAC9C,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,4BAA4B,EAAE;QAC5B,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,kEAAkE;QACpE,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,KAAK;QACnB,WAAW,EAAE,6BAA6B;KAC3C;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACD,kBAAe,cAAc,CAAA"}
1	+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/PileupRenderer/configSchema.ts"],"names":[],"mappings":";;AAAA,+DAAiE;AACjE,qDAAuC;AAEvC;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,cAAc,GAAG,IAAA,mCAAmB,EACxC,gBAAgB,EAChB;IACE;;;OAGG;IACH,KAAK,EAAE;QACL,IAAI,EAAE,OAAO;QACb,WAAW,EAAE,iDAAiD;QAC9D,YAAY,EAAE,MAAM;QACpB,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;IAED;;OAEG;IACH,eAAe,EAAE;QACf,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,iBAAiB,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;QAC/D,YAAY,EAAE,IAAI;QAClB,WAAW,EACT,oIAAoI;KACvI;IACD;;OAEG;IACH,WAAW,EAAE;QACX,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,aAAa,EAAE;YACtC,QAAQ;YACR,SAAS;YACT,UAAU;SACX,CAAC;QACF,WAAW,EAAE,2BAA2B;QACxC,YAAY,EAAE,QAAQ;KACvB;IACD;;OAEG;IACH,kBAAkB,EAAE;QAClB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,0IAA0I;QAC5I,YAAY,EAAE,CAAC;KAChB;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,qDAAqD;QAClE,YAAY,EAAE,IAAI;KACnB;IACD;;OAEG;IACH,eAAe,EAAE;QACf,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,oDAAoD;QACjE,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,kDAAkD;QAC/D,YAAY,EAAE,CAAC;QACf,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,iCAAiC;QAC9C,YAAY,EAAE,KAAK;KACpB;IACD;;OAEG;IACH,4BAA4B,EAAE;QAC5B,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,kEAAkE;QACpE,YAAY,EAAE,EAAE;KACjB;IACD;;OAEG;IACH,aAAa,EAAE;QACb,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,KAAK;QACnB,WAAW,EAAE,6BAA6B;KAC3C;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA;AACD,kBAAe,cAAc,CAAA"}

package/dist/PileupRenderer/sortUtil.js CHANGED Viewed

@@ -62,7 +62,7 @@ const sortFeature = (features, sortedBy) => {
                 const acode = bMismatch && bMismatch.base.toUpperCase();
                 const bcode = aMismatch && aMismatch.base.toUpperCase();
                 if (acode === bcode && acode === '*') {
-                    // @ts-ignore
+                    // @ts-expect-error
                     return aMismatch.length - bMismatch.length;
                 }
                 return ((acode ? acode.charCodeAt(0) : 0) - (bcode ? bcode.charCodeAt(0) : 0));
@@ -75,9 +75,10 @@ const sortFeature = (features, sortedBy) => {
             break;
         }
     }
-    const sortedMap = new Map(featuresInCenterLine
-        .concat(featuresOutsideCenter)
-        .map(feature => [feature.id(), feature]));
+    const sortedMap = new Map([...featuresInCenterLine, ...featuresOutsideCenter].map(feature => [
+        feature.id(),
+        feature,
+    ]));
     return sortedMap;
 };
 exports.sortFeature = sortFeature;

package/dist/PileupRenderer/sortUtil.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"sortUtil.js","sourceRoot":"","sources":["../../src/PileupRenderer/sortUtil.ts"],"names":[],"mappings":";;;AAAA,6CAA4D;AAQrD,MAAM,WAAW,GAAG,CACzB,QAA8B,EAC9B,QAAoB,EACpB,EAAE;IACF,MAAM,YAAY,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAA;IAClD,MAAM,oBAAoB,GAAc,EAAE,CAAA;IAC1C,MAAM,qBAAqB,GAAc,EAAE,CAAA;IAC3C,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,QAAQ,CAAA;IAE9B,mFAAmF;IACnF,YAAY,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE;QAChC,MAAM,OAAO,GAAG,UAAU,CAAA;QAC1B,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QAClC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;QAC9B,IAAI,IAAA,qBAAc,EAAC,GAAG,GAAG,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE;YAC5C,oBAAoB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;SACtC;aAAM;YACL,qBAAqB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;SACvC;IACH,CAAC,CAAC,CAAA;IAEF,MAAM,MAAM,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;IACxE,QAAQ,IAAI,EAAE;QACZ,KAAK,gBAAgB,CAAC,CAAC;YACrB,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAA;YACpE,MAAK;SACN;QAED,KAAK,KAAK,CAAC,CAAC;YACV,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAa,CAAA;YAClC,MAAM,MAAM,GAAG,CAAC,CAAU,EAAE,CAAS,EAAE,EAAE;gBACvC,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YAC7C,CAAC,CAAA;YACD,MAAM,QAAQ,GACZ,oBAAoB,CAAC,CAAC,CAAC;gBACvB,OAAO,MAAM,CAAC,oBAAoB,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,KAAK,QAAQ,CAAA;YAC1D,IAAI,QAAQ,EAAE;gBACZ,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACjC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAC7C,CAAA;aACF;iBAAM;gBACL,oBAAoB,CAAC,IAAI,CACvB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,CACxD,CAAA;aACF;YACD,MAAK;SACN;QAED,iEAAiE;QACjE,KAAK,WAAW,CAAC,CAAC;YAChB,MAAM,aAAa,GAAyB,EAAE,CAAA;YAC9C,oBAAoB,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;gBACrC,MAAM,UAAU,GAAe,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;gBACxD,UAAU,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE;oBAC5B,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;oBAClC,MAAM,MAAM,GAAG,KAAK,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAA;oBACzC,MAAM,SAAS,GACb,QAAQ,CAAC,IAAI,KAAK,WAAW,IAAI,QAAQ,CAAC,IAAI,KAAK,UAAU,CAAA;oBAC/D,MAAM,GAAG,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAA;oBAC3C,IAAI,GAAG,IAAI,MAAM,IAAI,GAAG,GAAG,MAAM,GAAG,GAAG,EAAE;wBACvC,aAAa,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,EAAE,EAAE,EAAE,QAAQ,CAAC,CAAC,CAAA;qBAC7C;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEF,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,aAAa,CAAC,CAAA;YACtC,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gBACjC,MAAM,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;gBACrC,MAAM,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;gBACrC,MAAM,KAAK,GAAG,SAAS,IAAI,SAAS,CAAC,IAAI,CAAC,WAAW,EAAE,CAAA;gBACvD,MAAM,KAAK,GAAG,SAAS,IAAI,SAAS,CAAC,IAAI,CAAC,WAAW,EAAE,CAAA;gBACvD,IAAI,KAAK,KAAK,KAAK,IAAI,KAAK,KAAK,GAAG,EAAE;oBACpC,~~aAAa~~;~~oBACb~~,OAAO,SAAS,CAAC,MAAM,GAAG,SAAS,CAAC,MAAM,CAAA;iBAC3C;gBACD,OAAO,CACL,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CACtE,CAAA;YACH,CAAC,CAAC,CAAA;YAEF,MAAK;SACN;QAED,+CAA+C;QAC/C,KAAK,aAAa,CAAC,CAAC;YAClB,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACjC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC5C,CAAA;YACD,MAAK;SACN;KACF;IAED,MAAM,SAAS,GAAG,IAAI,GAAG,CACvB,oBAAoB~~;SACjB~~,~~MAAM~~,~~CAAC~~,qBAAqB,CAAC~~;SAC7B~~,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,~~CAAC,~~OAAO,CAAC,EAAE,EAAE,~~EAAE,~~OAAO,CAAC,~~CAAC~~,~~CAC3C,~~CAAA;IAED,OAAO,SAAS,CAAA;AAClB,CAAC,CAAA;~~AAnGY~~,QAAA,WAAW,~~eAmGvB~~"}
1	+ {"version":3,"file":"sortUtil.js","sourceRoot":"","sources":["../../src/PileupRenderer/sortUtil.ts"],"names":[],"mappings":";;;AAAA,6CAA4D;AAQrD,MAAM,WAAW,GAAG,CACzB,QAA8B,EAC9B,QAAoB,EACpB,EAAE;IACF,MAAM,YAAY,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAA;IAClD,MAAM,oBAAoB,GAAc,EAAE,CAAA;IAC1C,MAAM,qBAAqB,GAAc,EAAE,CAAA;IAC3C,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,QAAQ,CAAA;IAE9B,mFAAmF;IACnF,YAAY,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE;QAChC,MAAM,OAAO,GAAG,UAAU,CAAA;QAC1B,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QAClC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;QAC9B,IAAI,IAAA,qBAAc,EAAC,GAAG,GAAG,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE;YAC5C,oBAAoB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;SACtC;aAAM;YACL,qBAAqB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;SACvC;IACH,CAAC,CAAC,CAAA;IAEF,MAAM,MAAM,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,KAAK,CAAA;IACxE,QAAQ,IAAI,EAAE;QACZ,KAAK,gBAAgB,CAAC,CAAC;YACrB,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAA;YACpE,MAAK;SACN;QAED,KAAK,KAAK,CAAC,CAAC;YACV,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAa,CAAA;YAClC,MAAM,MAAM,GAAG,CAAC,CAAU,EAAE,CAAS,EAAE,EAAE;gBACvC,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;YAC7C,CAAC,CAAA;YACD,MAAM,QAAQ,GACZ,oBAAoB,CAAC,CAAC,CAAC;gBACvB,OAAO,MAAM,CAAC,oBAAoB,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,KAAK,QAAQ,CAAA;YAC1D,IAAI,QAAQ,EAAE;gBACZ,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACjC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAC7C,CAAA;aACF;iBAAM;gBACL,oBAAoB,CAAC,IAAI,CACvB,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,CACxD,CAAA;aACF;YACD,MAAK;SACN;QAED,iEAAiE;QACjE,KAAK,WAAW,CAAC,CAAC;YAChB,MAAM,aAAa,GAAyB,EAAE,CAAA;YAC9C,oBAAoB,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;gBACrC,MAAM,UAAU,GAAe,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;gBACxD,UAAU,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE;oBAC5B,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;oBAClC,MAAM,MAAM,GAAG,KAAK,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAA;oBACzC,MAAM,SAAS,GACb,QAAQ,CAAC,IAAI,KAAK,WAAW,IAAI,QAAQ,CAAC,IAAI,KAAK,UAAU,CAAA;oBAC/D,MAAM,GAAG,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAA;oBAC3C,IAAI,GAAG,IAAI,MAAM,IAAI,GAAG,GAAG,MAAM,GAAG,GAAG,EAAE;wBACvC,aAAa,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,EAAE,EAAE,EAAE,QAAQ,CAAC,CAAC,CAAA;qBAC7C;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEF,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,aAAa,CAAC,CAAA;YACtC,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gBACjC,MAAM,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;gBACrC,MAAM,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAA;gBACrC,MAAM,KAAK,GAAG,SAAS,IAAI,SAAS,CAAC,IAAI,CAAC,WAAW,EAAE,CAAA;gBACvD,MAAM,KAAK,GAAG,SAAS,IAAI,SAAS,CAAC,IAAI,CAAC,WAAW,EAAE,CAAA;gBACvD,IAAI,KAAK,KAAK,KAAK,IAAI,KAAK,KAAK,GAAG,EAAE;oBACpC,mBAAmB;oBACnB,OAAO,SAAS,CAAC,MAAM,GAAG,SAAS,CAAC,MAAM,CAAA;iBAC3C;gBACD,OAAO,CACL,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CACtE,CAAA;YACH,CAAC,CAAC,CAAA;YAEF,MAAK;SACN;QAED,+CAA+C;QAC/C,KAAK,aAAa,CAAC,CAAC;YAClB,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACjC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC5C,CAAA;YACD,MAAK;SACN;KACF;IAED,MAAM,SAAS,GAAG,IAAI,GAAG,CACvB,CAAC,GAAG,oBAAoB,EAAE,GAAG,qBAAqB,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC;QACjE,OAAO,CAAC,EAAE,EAAE;QACZ,OAAO;KACR,CAAC,CACH,CAAA;IAED,OAAO,SAAS,CAAA;AAClB,CAAC,CAAA;AApGY,QAAA,WAAW,eAoGvB"}

package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js CHANGED Viewed

@@ -4,6 +4,7 @@ const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
+const fudgeFactor = 0.6;
 class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
     // note: the snps are drawn on linear scale even if the data is drawn in log
     // scape hence the two different scales being used
@@ -30,6 +31,7 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
             scaleType: 'linear',
         });
         const originY = (0, plugin_wiggle_1.getOrigin)(scaleOpts.scaleType);
+        const originLinear = (0, plugin_wiggle_1.getOrigin)('linear');
         const indicatorThreshold = (0, configuration_1.readConfObject)(cfg, 'indicatorThreshold');
         const drawInterbaseCounts = (0, configuration_1.readConfObject)(cfg, 'drawInterbaseCounts');
         const drawArcs = (0, configuration_1.readConfObject)(cfg, 'drawArcs');
@@ -37,8 +39,9 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
         // get the y coordinate that we are plotting at, this can be log scale
         const toY = (n) => height - (viewScale(n) || 0) + offset;
         const toHeight = (n) => toY(originY) - toY(n);
-        const indicatorToY = (n) => height - (indicatorViewScale(n) || 0) + offset;
-        const indicatorToHeight = (n) => indicatorToY((0, plugin_wiggle_1.getOrigin)('linear')) - indicatorToY(n);
+        // used specifically for indicator
+        const toY2 = (n) => height - (indicatorViewScale(n) || 0) + offset;
+        const toHeight2 = (n) => toY2(originLinear) - toY2(n);
         const { bases } = theme.palette;
         const colorForBase = {
             A: bases.A.main,
@@ -51,7 +54,6 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
             hardclip: 'red',
             meth: 'red',
             unmeth: 'blue',
-            ref: 'lightgrey',
         };
         const feats = [...features.values()];
         const coverage = feats.filter(f => f.get('type') !== 'skip');
@@ -62,7 +64,7 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
         for (let i = 0; i < coverage.length; i++) {
             const feature = coverage[i];
             const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
-            const w = rightPx - leftPx + 0.3;
+            const w = rightPx - leftPx + fudgeFactor;
             const score = feature.get('score');
             ctx.fillRect(leftPx, toY(score), w, toHeight(score));
         }
@@ -83,7 +85,7 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
             const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
             const score = feature.get('score');
             const snpinfo = feature.get('snpinfo');
-            const w = Math.max(rightPx - leftPx + 0.3, 1);
+            const w = Math.max(rightPx - leftPx + fudgeFactor, 1);
             const totalScore = snpinfo.total;
             const keys = Object.keys(snpinfo.cov).sort();
             let curr = 0;
@@ -96,7 +98,7 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
                         '#888';
                 const height = toHeight(score);
                 const bottom = toY(score) + height;
-                ctx.fillRect(leftPx, bottom - ((total + curr) / score) * height, w, (total / score) * height);
+                ctx.fillRect(Math.round(leftPx), bottom - ((total + curr) / score) * height, w, (total / score) * height);
                 curr += total;
             }
             const interbaseEvents = Object.keys(snpinfo.noncov);
@@ -106,8 +108,9 @@ class SNPCoverageRenderer extends plugin_wiggle_1.WiggleBaseRenderer {
                 for (let i = 0; i < interbaseEvents.length; i++) {
                     const base = interbaseEvents[i];
                     const { total } = snpinfo.noncov[base];
+                    const r = 0.6;
                     ctx.fillStyle = colorForBase[base];
-                    ctx.fillRect(leftPx - 0.6 + extraHorizontallyFlippedOffset, indicatorHeight + indicatorToHeight(curr), 1.2, indicatorToHeight(total));
+                    ctx.fillRect(leftPx - r + extraHorizontallyFlippedOffset, indicatorHeight + toHeight2(curr), r * 2, toHeight2(total));
                     curr += total;
                 }
             }

package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SNPCoverageRenderer.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/SNPCoverageRenderer.ts"],"names":[],"mappings":";;AAAA,yCAAqD;AACrD,6CAAqE;AACrE,+DAA4D;AAE5D,0DAM+B;AA2B/B,MAAqB,mBAAoB,SAAQ,kCAAkB;IACjE,4EAA4E;IAC5E,kDAAkD;IAClD,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EACJ,QAAQ,EACR,OAAO,EACP,OAAO,EACP,mBAAmB,EACnB,kBAAkB,GAAG,EAAE,EACvB,SAAS,EACT,MAAM,EAAE,gBAAgB,EACxB,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,GAAG,EACX,KAAK,GACN,GAAG,KAAK,CAAA;QACT,MAAM,KAAK,GAAG,IAAA,uBAAkB,EAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,MAAM,GAAG,sCAAsB,CAAA;QACrC,MAAM,MAAM,GAAG,gBAAgB,GAAG,MAAM,GAAG,CAAC,CAAA;QAE5C,MAAM,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;QAC5B,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,MAAM,IAAI,GAAG,EAAE,GAAG,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,EAAE,CAAA;QACjD,MAAM,SAAS,GAAG,IAAA,wBAAQ,EAAC,IAAI,CAAC,CAAA;QAEhC,mEAAmE;QACnE,MAAM,kBAAkB,GAAG,IAAA,wBAAQ,EAAC;YAClC,GAAG,IAAI;YACP,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,CAAC;YACtB,SAAS,EAAE,QAAQ;SACpB,CAAC,CAAA;QACF,MAAM,OAAO,GAAG,IAAA,yBAAS,EAAC,SAAS,CAAC,SAAS,CAAC,CAAA;~~QAE9C~~,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,oBAAoB,CAAC,CAAA;QACpE,MAAM,mBAAmB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,qBAAqB,CAAC,CAAA;QACtE,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,UAAU,CAAC,CAAA;QAChD,MAAM,cAAc,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,gBAAgB,CAAC,CAAA;QAE5D,sEAAsE;QACtE,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,MAAM,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QAChE,MAAM,QAAQ,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;~~QAErD~~,MAAM,~~YAAY~~,GAAG,CAAC,CAAS,EAAE,EAAE,~~CACjC~~,MAAM,GAAG,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;~~QAChD~~,MAAM,~~iBAAiB~~,GAAG,CAAC,CAAS,EAAE,EAAE,~~CACtC~~,~~YAAY~~,CAAC,~~IAAA~~,~~yBAAS,EAAC,QAAQ,~~CAAC,~~CAAC,~~GAAG,~~YAAY~~,CAAC,CAAC,CAAC,CAAA;~~QAErD~~,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;QAC/B,MAAM,YAAY,GAA8B;YAC9C,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,KAAK,EAAE,WAAW;YAClB,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,MAAM;YAChB,QAAQ,EAAE,KAAK;YACf,IAAI,EAAE,KAAK;YACX,MAAM,EAAE,MAAM;~~YACd~~,~~GAAG,EAAE,WAAW;SACjB,~~CAAA;QAED,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAA;QACpC,MAAM,QAAQ,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAC5D,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAEzD,wEAAwE;QACxE,+CAA+C;QAC/C,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,KAAK,CAAA;QAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACjE,MAAM,CAAC,GAAG,OAAO,GAAG,MAAM,GAAG,~~GAAG~~,CAAA;~~YAChC~~,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;SACrD;QAED,0EAA0E;QAC1E,2EAA2E;QAC3E,0EAA0E;QAC1E,0EAA0E;QAC1E,wEAAwE;QACxE,IAAI,SAAS,GAAG,CAAC,CAAA;QAEjB,wEAAwE;QACxE,+DAA+D;QAC/D,MAAM,8BAA8B,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;QAExE,yEAAyE;QACzE,yEAAyE;QACzE,oCAAoC;QAEpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAEjE,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAY,CAAA;YACjD,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,MAAM,GAAG,~~GAAG~~,EAAE,CAAC,CAAC,CAAA;~~YAC7C~~,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAA;YAChC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAA;YAE5C,IAAI,IAAI,GAAG,CAAC,CAAA;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACpC,MAAM,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpB,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;gBACnC,GAAG,CAAC,SAAS;oBACX,YAAY,CAAC,IAAI,CAAC;wBAClB,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;wBAC5C,MAAM,CAAA;gBAER,MAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;gBAC9B,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,MAAM,CAAA;gBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,~~EACN~~,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,KAAK,CAAC,GAAG,MAAM,EAC1C,CAAC,EACD,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,MAAM,CACzB,CAAA;gBACD,IAAI,IAAI,KAAK,CAAA;aACd;YAED,MAAM,eAAe,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;YACnD,MAAM,eAAe,GAAG,GAAG,CAAA;YAC3B,IAAI,mBAAmB,EAAE;gBACvB,IAAI,IAAI,GAAG,CAAC,CAAA;gBACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,GAAG,~~GAAG~~,GAAG,8BAA8B,~~EAC7C~~,eAAe,GAAG,~~iBAAiB~~,CAAC,IAAI,CAAC,~~EACzC~~,GAAG,~~EACH~~,~~iBAAiB~~,CAAC,KAAK,CAAC,~~CACzB~~,CAAA;oBACD,IAAI,IAAI,KAAK,CAAA;iBACd;aACF;YAED,IAAI,cAAc,EAAE;gBAClB,IAAI,KAAK,GAAG,CAAC,CAAA;gBACb,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,IAAI,OAAO,GAAG,EAAE,CAAA;gBAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,KAAK,IAAI,KAAK,CAAA;oBACd,IAAI,KAAK,GAAG,GAAG,EAAE;wBACf,GAAG,GAAG,KAAK,CAAA;wBACX,OAAO,GAAG,IAAI,CAAA;qBACf;iBACF;gBAED,mEAAmE;gBACnE,8DAA8D;gBAC9D,MAAM,wBAAwB,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,EAAE,SAAS,CAAC,CAAA;gBAChE,IACE,KAAK,GAAG,wBAAwB,GAAG,kBAAkB;oBACrD,wBAAwB,GAAG,CAAC,EAC5B;oBACA,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,OAAO,CAAC,CAAA;oBACrC,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,MAAM,CAAC,GAAG,MAAM,GAAG,8BAA8B,CAAA;oBACjD,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;oBAC9B,GAAG,CAAC,IAAI,EAAE,CAAA;iBACX;aACF;YACD,SAAS,GAAG,UAAU,CAAA;SACvB;QAED,IAAI,QAAQ,EAAE;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACrC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBAClB,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,IAAA,eAAQ,EAC5B,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EACd,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,EACZ,MAAM,EACN,OAAO,CACR,CAAA;gBAED,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,MAAM,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAW,CAAA;gBACrC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,IAAI,CAAW,CAAA;gBAChC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,OAAO,GAAG,uBAAuB,CAAA;gBAEvC,IAAI,EAAE,KAAK,GAAG,EAAE;oBACd,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,EAAE,KAAK,GAAG,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,EAAE;oBACpB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM;oBACL,GAAG,CAAC,WAAW,GAAG,OAAO,CAAA;iBAC1B;gBAED,GAAG,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAA;gBAC5C,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBACrC,GAAG,CAAC,aAAa,CAAC,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBAChE,GAAG,CAAC,MAAM,EAAE,CAAA;aACb;SACF;QAED,IAAI,mBAAmB,EAAE;YACvB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBAC1B,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACxC,GAAG,CAAC,MAAM,EAAE,CAAA;YACd,CAAC,CAAC,CAAA;SACH;IACH,CAAC;CACF;~~AAvOD~~,~~sCAuOC~~"}
1	+ {"version":3,"file":"SNPCoverageRenderer.js","sourceRoot":"","sources":["../../src/SNPCoverageRenderer/SNPCoverageRenderer.ts"],"names":[],"mappings":";;AAAA,yCAAqD;AACrD,6CAAqE;AACrE,+DAA4D;AAE5D,0DAM+B;AA2B/B,MAAM,WAAW,GAAG,GAAG,CAAA;AAEvB,MAAqB,mBAAoB,SAAQ,kCAAkB;IACjE,4EAA4E;IAC5E,kDAAkD;IAClD,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EACJ,QAAQ,EACR,OAAO,EACP,OAAO,EACP,mBAAmB,EACnB,kBAAkB,GAAG,EAAE,EACvB,SAAS,EACT,MAAM,EAAE,gBAAgB,EACxB,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,GAAG,EACX,KAAK,GACN,GAAG,KAAK,CAAA;QACT,MAAM,KAAK,GAAG,IAAA,uBAAkB,EAAC,WAAW,CAAC,CAAA;QAC7C,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,MAAM,GAAG,sCAAsB,CAAA;QACrC,MAAM,MAAM,GAAG,gBAAgB,GAAG,MAAM,GAAG,CAAC,CAAA;QAE5C,MAAM,EAAE,MAAM,EAAE,GAAG,SAAS,CAAA;QAC5B,IAAI,CAAC,MAAM,EAAE;YACX,OAAM;SACP;QACD,MAAM,IAAI,GAAG,EAAE,GAAG,SAAS,EAAE,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,CAAC,EAAE,CAAA;QACjD,MAAM,SAAS,GAAG,IAAA,wBAAQ,EAAC,IAAI,CAAC,CAAA;QAEhC,mEAAmE;QACnE,MAAM,kBAAkB,GAAG,IAAA,wBAAQ,EAAC;YAClC,GAAG,IAAI;YACP,KAAK,EAAE,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,CAAC;YACtB,SAAS,EAAE,QAAQ;SACpB,CAAC,CAAA;QACF,MAAM,OAAO,GAAG,IAAA,yBAAS,EAAC,SAAS,CAAC,SAAS,CAAC,CAAA;QAC9C,MAAM,YAAY,GAAG,IAAA,yBAAS,EAAC,QAAQ,CAAC,CAAA;QAExC,MAAM,kBAAkB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,oBAAoB,CAAC,CAAA;QACpE,MAAM,mBAAmB,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,qBAAqB,CAAC,CAAA;QACtE,MAAM,QAAQ,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,UAAU,CAAC,CAAA;QAChD,MAAM,cAAc,GAAG,IAAA,8BAAc,EAAC,GAAG,EAAE,gBAAgB,CAAC,CAAA;QAE5D,sEAAsE;QACtE,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,MAAM,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QAChE,MAAM,QAAQ,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;QACrD,kCAAkC;QAClC,MAAM,IAAI,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,MAAM,GAAG,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,MAAM,CAAA;QAC1E,MAAM,SAAS,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QAE7D,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;QAC/B,MAAM,YAAY,GAA8B;YAC9C,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI;YACf,KAAK,EAAE,WAAW;YAClB,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,MAAM;YAChB,QAAQ,EAAE,KAAK;YACf,IAAI,EAAE,KAAK;YACX,MAAM,EAAE,MAAM;SACf,CAAA;QAED,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAA;QACpC,MAAM,QAAQ,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAC5D,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,CAAC,CAAA;QAEzD,wEAAwE;QACxE,+CAA+C;QAC/C,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,KAAK,CAAA;QAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YACjE,MAAM,CAAC,GAAG,OAAO,GAAG,MAAM,GAAG,WAAW,CAAA;YACxC,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,GAAG,CAAC,QAAQ,CAAC,MAAM,EAAE,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;SACrD;QAED,0EAA0E;QAC1E,2EAA2E;QAC3E,0EAA0E;QAC1E,0EAA0E;QAC1E,wEAAwE;QACxE,IAAI,SAAS,GAAG,CAAC,CAAA;QAEjB,wEAAwE;QACxE,+DAA+D;QAC/D,MAAM,8BAA8B,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;QAExE,yEAAyE;QACzE,yEAAyE;QACzE,oCAAoC;QAEpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;YAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAA,oBAAa,EAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAEjE,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,OAAO,CAAW,CAAA;YAC5C,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,CAAC,SAAS,CAAY,CAAA;YACjD,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,MAAM,GAAG,WAAW,EAAE,CAAC,CAAC,CAAA;YACrD,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAA;YAChC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAA;YAE5C,IAAI,IAAI,GAAG,CAAC,CAAA;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACpC,MAAM,IAAI,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpB,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;gBACnC,GAAG,CAAC,SAAS;oBACX,YAAY,CAAC,IAAI,CAAC;wBAClB,kBAAkB,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;wBAC5C,MAAM,CAAA;gBAER,MAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;gBAC9B,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,MAAM,CAAA;gBAClC,GAAG,CAAC,QAAQ,CACV,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,EAClB,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,KAAK,CAAC,GAAG,MAAM,EAC1C,CAAC,EACD,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,MAAM,CACzB,CAAA;gBACD,IAAI,IAAI,KAAK,CAAA;aACd;YAED,MAAM,eAAe,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;YACnD,MAAM,eAAe,GAAG,GAAG,CAAA;YAC3B,IAAI,mBAAmB,EAAE;gBACvB,IAAI,IAAI,GAAG,CAAC,CAAA;gBACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,MAAM,CAAC,GAAG,GAAG,CAAA;oBACb,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;oBAClC,GAAG,CAAC,QAAQ,CACV,MAAM,GAAG,CAAC,GAAG,8BAA8B,EAC3C,eAAe,GAAG,SAAS,CAAC,IAAI,CAAC,EACjC,CAAC,GAAG,CAAC,EACL,SAAS,CAAC,KAAK,CAAC,CACjB,CAAA;oBACD,IAAI,IAAI,KAAK,CAAA;iBACd;aACF;YAED,IAAI,cAAc,EAAE;gBAClB,IAAI,KAAK,GAAG,CAAC,CAAA;gBACb,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,IAAI,OAAO,GAAG,EAAE,CAAA;gBAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;oBAC/C,MAAM,IAAI,GAAG,eAAe,CAAC,CAAC,CAAC,CAAA;oBAC/B,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACtC,KAAK,IAAI,KAAK,CAAA;oBACd,IAAI,KAAK,GAAG,GAAG,EAAE;wBACf,GAAG,GAAG,KAAK,CAAA;wBACX,OAAO,GAAG,IAAI,CAAA;qBACf;iBACF;gBAED,mEAAmE;gBACnE,8DAA8D;gBAC9D,MAAM,wBAAwB,GAAG,IAAI,CAAC,GAAG,CAAC,UAAU,EAAE,SAAS,CAAC,CAAA;gBAChE,IACE,KAAK,GAAG,wBAAwB,GAAG,kBAAkB;oBACrD,wBAAwB,GAAG,CAAC,EAC5B;oBACA,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,OAAO,CAAC,CAAA;oBACrC,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,MAAM,CAAC,GAAG,MAAM,GAAG,8BAA8B,CAAA;oBACjD,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAA;oBACtB,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,eAAe,CAAC,CAAA;oBAC9B,GAAG,CAAC,IAAI,EAAE,CAAA;iBACX;aACF;YACD,SAAS,GAAG,UAAU,CAAA;SACvB;QAED,IAAI,QAAQ,EAAE;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACrC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBAClB,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,IAAA,eAAQ,EAC5B,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,EACd,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,EACZ,MAAM,EACN,OAAO,CACR,CAAA;gBAED,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,MAAM,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAW,CAAA;gBACrC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,IAAI,CAAW,CAAA;gBAChC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,GAAG,GAAG,uBAAuB,CAAA;gBACnC,MAAM,OAAO,GAAG,uBAAuB,CAAA;gBAEvC,IAAI,EAAE,KAAK,GAAG,EAAE;oBACd,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,EAAE,KAAK,GAAG,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,EAAE;oBACpB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE;oBACrB,GAAG,CAAC,WAAW,GAAG,GAAG,CAAA;iBACtB;qBAAM;oBACL,GAAG,CAAC,WAAW,GAAG,OAAO,CAAA;iBAC1B;gBAED,GAAG,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAA;gBAC5C,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBACrC,GAAG,CAAC,aAAa,CAAC,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,CAAC,CAAC,CAAA;gBAChE,GAAG,CAAC,MAAM,EAAE,CAAA;aACb;SACF;QAED,IAAI,mBAAmB,EAAE;YACvB,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;YACjB,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;YACzC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBAC1B,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACpC,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBACxC,GAAG,CAAC,MAAM,EAAE,CAAA;YACd,CAAC,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAtOD,sCAsOC"}

package/dist/index.d.ts CHANGED Viewed

@@ -1,11 +1,9 @@
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
-import { linearPileupDisplayStateModelFactory, linearPileupDisplayConfigSchemaFactory } from './LinearPileupDisplay';
-import { LinearPileupDisplayModel } from './LinearPileupDisplay/model';
-import * as MismatchParser from './MismatchParser';
 export default class AlignmentsPlugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;
 }
-export { linearPileupDisplayConfigSchemaFactory, linearPileupDisplayStateModelFactory, MismatchParser, };
-export type { LinearPileupDisplayModel };
+export { linearPileupDisplayStateModelFactory, linearPileupDisplayConfigSchemaFactory, } from './LinearPileupDisplay';
+export { type LinearPileupDisplayModel } from './LinearPileupDisplay/model';
+export * as MismatchParser from './MismatchParser';

package/dist/index.js CHANGED Viewed

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.MismatchParser = exports.linearPileupDisplayStateModelFactory = exports.linearPileupDisplayConfigSchemaFactory = void 0;
+exports.MismatchParser = exports.linearPileupDisplayConfigSchemaFactory = exports.linearPileupDisplayStateModelFactory = void 0;
 const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
 const CramAdapter_1 = __importDefault(require("./CramAdapter"));
 const BamAdapter_1 = __importDefault(require("./BamAdapter"));
@@ -42,11 +42,7 @@ const AlignmentsTrack_1 = __importDefault(require("./AlignmentsTrack"));
 const AlignmentsFeatureDetail_1 = __importDefault(require("./AlignmentsFeatureDetail"));
 const PileupRPC_1 = __importDefault(require("./PileupRPC"));
 const GuessAlignmentsTypes_1 = __importDefault(require("./GuessAlignmentsTypes"));
-const LinearPileupDisplay_1 = __importStar(require("./LinearPileupDisplay"));
-Object.defineProperty(exports, "linearPileupDisplayStateModelFactory", { enumerable: true, get: function () { return LinearPileupDisplay_1.linearPileupDisplayStateModelFactory; } });
-Object.defineProperty(exports, "linearPileupDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearPileupDisplay_1.linearPileupDisplayConfigSchemaFactory; } });
-const MismatchParser = __importStar(require("./MismatchParser"));
-exports.MismatchParser = MismatchParser;
+const LinearPileupDisplay_1 = __importDefault(require("./LinearPileupDisplay"));
 class AlignmentsPlugin extends Plugin_1.default {
     constructor() {
         super(...arguments);
@@ -74,4 +70,8 @@ class AlignmentsPlugin extends Plugin_1.default {
     }
 }
 exports.default = AlignmentsPlugin;
+var LinearPileupDisplay_2 = require("./LinearPileupDisplay");
+Object.defineProperty(exports, "linearPileupDisplayStateModelFactory", { enumerable: true, get: function () { return LinearPileupDisplay_2.linearPileupDisplayStateModelFactory; } });
+Object.defineProperty(exports, "linearPileupDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearPileupDisplay_2.linearPileupDisplayConfigSchemaFactory; } });
+exports.MismatchParser = __importStar(require("./MismatchParser"));
 //# sourceMappingURL=index.js.map

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,gEAAuC;AACvC,8DAAuC;AACvC,0EAAkD;AAClD,8EAAsD;AACtD,gFAAwD;AACxD,sEAA8C;AAC9C,wFAAgE;AAChE,0FAAkE;AAClE,oFAA4D;AAC5D,sFAA8D;AAC9D,wEAAgD;AAChD,wFAAgE;AAChE,4DAA2C;AAC3C,kFAA0D;AAC1D,~~6EAG8B~~;~~AA8B5B~~,~~qHAhCA,0DAAoC,OAgCA;AADpC,uHA9BA,4DAAsC,OA8BA;AA3BxC,iEAAkD;AA6BhD,wCAAc;AA3BhB,~~MAAqB,gBAAiB,SAAQ,gBAAM;IAApD;;QACE,SAAI,GAAG,kBAAkB,CAAA;IAqB3B,CAAC;IAnBC,OAAO,CAAC,aAA4B;QAClC,CAAC;QAAA;YACC,oBAAY;YACZ,qBAAW;YACX,6BAAoB;YACpB,kCAAyB;YACzB,yBAAgB;YAChB,4BAAmB;YACnB,0BAAiB;YACjB,wBAAe;YACf,mBAAiB;YACjB,6BAAoB;YACpB,+BAAsB;YACtB,gCAAuB;YACvB,iCAAwB;YACxB,iCAAwB;YACxB,8BAAqB;SACtB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAA;IAC9B,CAAC;CACF;AAtBD,mCAsBC"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,gEAAuC;AACvC,8DAAuC;AACvC,0EAAkD;AAClD,8EAAsD;AACtD,gFAAwD;AACxD,sEAA8C;AAC9C,wFAAgE;AAChE,0FAAkE;AAClE,oFAA4D;AAC5D,sFAA8D;AAC9D,wEAAgD;AAChD,wFAAgE;AAChE,4DAA2C;AAC3C,kFAA0D;AAC1D,gFAAwD;AAExD,MAAqB,gBAAiB,SAAQ,gBAAM;IAApD;;QACE,SAAI,GAAG,kBAAkB,CAAA;IAqB3B,CAAC;IAnBC,OAAO,CAAC,aAA4B;QAClC,CAAC;QAAA;YACC,oBAAY;YACZ,qBAAW;YACX,6BAAoB;YACpB,kCAAyB;YACzB,yBAAgB;YAChB,4BAAmB;YACnB,0BAAiB;YACjB,wBAAe;YACf,mBAAiB;YACjB,6BAAoB;YACpB,+BAAsB;YACtB,gCAAuB;YACvB,iCAAwB;YACxB,iCAAwB;YACxB,8BAAqB;SACtB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAA;IAC9B,CAAC;CACF;AAtBD,mCAsBC;AAED,6DAG8B;AAF5B,2IAAA,oCAAoC,OAAA;AACpC,6IAAA,sCAAsC,OAAA;AAGxC,mEAAkD"}

package/esm/BamAdapter/BamAdapter.js CHANGED Viewed

@@ -116,7 +116,7 @@ export default class BamAdapter extends BaseFeatureDataAdapter {
             const trimEnd = Math.min(end - chunkStart, chunkEnd - chunkStart);
             const trimLength = trimEnd - trimStart;
             const chunkSeq = chunk.get('seq') || chunk.get('residues');
-            sequence += chunkSeq.substr(trimStart, trimLength);
+            sequence += chunkSeq.slice(trimStart, trimStart + trimLength);
         });
         if (sequence.length !== end - start) {
             throw new Error(`sequence fetch failed: fetching ${refName}:${(start - 1).toLocaleString()}-${end.toLocaleString()} returned ${sequence.length.toLocaleString()} bases, but should have returned ${(end - start).toLocaleString()}`);
@@ -159,7 +159,7 @@ export default class BamAdapter extends BaseFeatureDataAdapter {
     async estimateRegionsStats(regions, opts) {
         const { bam } = await this.configure();
         // this is a method to avoid calling on htsget adapters
-        // @ts-ignore
+        // @ts-expect-error
         if (bam.index.filehandle !== '?') {
             const bytes = await bytesForRegions(regions, bam);
             const fetchSizeLimit = this.getConf('fetchSizeLimit');

package/esm/BamAdapter/BamAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"BamAdapter.js","sourceRoot":"","sources":["../../src/BamAdapter/BamAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAA;AACnC,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,eAAe,EAAE,YAAY,EAAW,MAAM,oBAAoB,CAAA;AAC3E,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,SAAS;AACT,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AAOrC,MAAM,CAAC,OAAO,OAAO,UAAW,SAAQ,sBAAsB;IAS5D,iEAAiE;IACjE,oEAAoE;IAC1D,KAAK,CAAC,YAAY;QAC1B,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACpD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QACtD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,SAAS,KAAK,KAAK,CAAA;QAC/B,MAAM,GAAG,GAAG,IAAI,OAAO,CAAC;YACtB,aAAa,EAAE,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC;YAC5C,aAAa,EAAE,GAAG,CAAC,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAC3D,aAAa,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAE5D,8DAA8D;YAC9D,gEAAgE;YAChE,mEAAmE;YACnE,cAAc,EAAE,QAAQ;YACxB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,QAAQ;SAC1B,CAAC,CAAA;QAEF,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QACrD,IAAI,aAAa,IAAI,IAAI,CAAC,aAAa,EAAE;YACvC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAAA;YAC/D,OAAO;gBACL,GAAG;gBACH,eAAe,EAAE,WAAqC;aACvD,CAAA;SACF;aAAM;YACL,OAAO,EAAE,GAAG,EAAE,CAAA;SACf;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,aAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,IAAI,CAAC,SAAS,GAAG,MAAM,YAAY,CACjC,mBAAmB,EACnB,cAAc,EACd,KAAK,IAAI,EAAE;YACT,MAAM,SAAS,GAAG,MAAM,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;YAE3C,oDAAoD;YACpD,+CAA+C;YAC/C,MAAM,QAAQ,GAAa,EAAE,CAAA;YAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;YAC3C,SAAS;iBACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;iBAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;gBACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;oBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;wBACrB,uBAAuB;wBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;wBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;wBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;qBAC1B;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEJ,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;QAC/B,CAAC,CACF,CAAA;QACD,OAAO,IAAI,CAAC,SAAS,CAAA;IACvB,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAe,EAAE,KAAa,EAAE,GAAW;QAChE,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,WAAW,GAAG,eAAe,CAAA;QACnC,IAAI,CAAC,WAAW,EAAE;YAChB,OAAO,SAAS,CAAA;SACjB;QACD,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QAED,MAAM,QAAQ,GAAG,WAAW,CAAC,WAAW,CAAC;YACvC,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC,CAAA;QAEF,MAAM,SAAS,GAAG,MAAM,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAEhE,IAAI,QAAQ,GAAG,EAAE,CAAA;QACjB,SAAS;aACN,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,OAAO,CAAC,KAAK,CAAC,EAAE;YACf,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,QAAQ,IAAI,QAAQ,CAAC,~~MAAM~~,CAAC,SAAS,EAAE,UAAU,CAAC,CAAA;~~QACpD~~,CAAC,CAAC,CAAA;QAEJ,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAOC;QAED,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QACvD,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YACtC,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACtB,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,GAAG,CAAC,kBAAkB,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;YAEvE,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;gBAC5B,IAAI,GAAuB,CAAA;gBAC3B,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACrB,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CACvB,eAAe,IAAI,OAAO,EAC1B,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,EACnB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAClB,CAAA;iBACF;gBAED,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,IACE,CAAC,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAC,EAClE;oBACA,SAAQ;iBACT;gBAED,IAAI,SAAS,EAAE;oBACb,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACrC,IAAI,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAC,EAAE;wBAChE,SAAQ;qBACT;iBACF;gBAED,IAAI,QAAQ,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,QAAQ,EAAE;oBAC/C,SAAQ;iBACT;gBAED,QAAQ,CAAC,IAAI,CAAC,IAAI,sBAAsB,CAAC,MAAM,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAA;aAC7D;YACD,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,uDAAuD;QACvD,~~aAAa~~;~~QACb~~,IAAI,GAAG,CAAC,KAAK,CAAC,UAAU,KAAK,GAAG,EAAE;YAChC,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,OAAO,EAAE,GAAG,CAAC,CAAA;YACjD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;YACrD,OAAO,EAAE,KAAK,EAAE,cAAc,EAAE,CAAA;SACjC;aAAM;YACL,OAAO,KAAK,CAAC,oBAAoB,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;SACjD;IACH,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,2DAA2D;IAC3D,WAAW,CAAC,KAAa;;QACvB,OAAO,MAAA,IAAI,CAAC,SAAS,0CAAE,QAAQ,CAAC,KAAK,CAAC,CAAA;IACxC,CAAC;CACF"}
1	+ {"version":3,"file":"BamAdapter.js","sourceRoot":"","sources":["../../src/BamAdapter/BamAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAA;AACnC,OAAO,EACL,sBAAsB,GAEvB,MAAM,yCAAyC,CAAA;AAEhD,OAAO,EAAE,eAAe,EAAE,YAAY,EAAW,MAAM,oBAAoB,CAAA;AAC3E,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,SAAS;AACT,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AAOrC,MAAM,CAAC,OAAO,OAAO,UAAW,SAAQ,sBAAsB;IAS5D,iEAAiE;IACjE,oEAAoE;IAC1D,KAAK,CAAC,YAAY;QAC1B,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,CAAA;QAC/C,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAA;QACpD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC,CAAA;QACtD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,GAAG,GAAG,SAAS,KAAK,KAAK,CAAA;QAC/B,MAAM,GAAG,GAAG,IAAI,OAAO,CAAC;YACtB,aAAa,EAAE,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC;YAC5C,aAAa,EAAE,GAAG,CAAC,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAC3D,aAAa,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,YAAY,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;YAE5D,8DAA8D;YAC9D,gEAAgE;YAChE,mEAAmE;YACnE,cAAc,EAAE,QAAQ;YACxB,cAAc,EAAE,QAAQ;YACxB,eAAe,EAAE,QAAQ;SAC1B,CAAC,CAAA;QAEF,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QACrD,IAAI,aAAa,IAAI,IAAI,CAAC,aAAa,EAAE;YACvC,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,aAAa,CAAC,CAAA;YAC/D,OAAO;gBACL,GAAG;gBACH,eAAe,EAAE,WAAqC;aACvD,CAAA;SACF;aAAM;YACL,OAAO,EAAE,GAAG,EAAE,CAAA;SACf;IACH,CAAC;IAES,KAAK,CAAC,SAAS;QACvB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,OAAO,GAAG,CAAC,aAAa,CAAC,IAAI,CAAC,CAAA;IAChC,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,IAAI,CAAC,SAAS,GAAG,MAAM,YAAY,CACjC,mBAAmB,EACnB,cAAc,EACd,KAAK,IAAI,EAAE;YACT,MAAM,SAAS,GAAG,MAAM,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;YAE3C,oDAAoD;YACpD,+CAA+C;YAC/C,MAAM,QAAQ,GAAa,EAAE,CAAA;YAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;YAC3C,SAAS;iBACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;iBAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;gBACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;oBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;wBACrB,uBAAuB;wBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;wBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;wBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;qBAC1B;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAA;YAEJ,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;QAC/B,CAAC,CACF,CAAA;QACD,OAAO,IAAI,CAAC,SAAS,CAAA;IACvB,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,IAAkB;QAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC3C,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,OAAe,EAAE,KAAa,EAAE,GAAW;QAChE,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,WAAW,GAAG,eAAe,CAAA;QACnC,IAAI,CAAC,WAAW,EAAE;YAChB,OAAO,SAAS,CAAA;SACjB;QACD,IAAI,CAAC,OAAO,EAAE;YACZ,OAAO,SAAS,CAAA;SACjB;QAED,MAAM,QAAQ,GAAG,WAAW,CAAC,WAAW,CAAC;YACvC,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC,CAAA;QAEF,MAAM,SAAS,GAAG,MAAM,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAEhE,IAAI,QAAQ,GAAG,EAAE,CAAA;QACjB,SAAS;aACN,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,OAAO,CAAC,KAAK,CAAC,EAAE;YACf,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,QAAQ,IAAI,QAAQ,CAAC,KAAK,CAAC,SAAS,EAAE,SAAS,GAAG,UAAU,CAAC,CAAA;QAC/D,CAAC,CAAC,CAAA;QAEJ,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAOC;QAED,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QACvD,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;YACtC,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACtB,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,GAAG,CAAC,kBAAkB,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;YAEvE,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE;gBAC5B,IAAI,GAAuB,CAAA;gBAC3B,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACrB,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CACvB,eAAe,IAAI,OAAO,EAC1B,MAAM,CAAC,GAAG,CAAC,OAAO,CAAC,EACnB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAClB,CAAA;iBACF;gBAED,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,IACE,CAAC,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAC,EAClE;oBACA,SAAQ;iBACT;gBAED,IAAI,SAAS,EAAE;oBACb,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACrC,IAAI,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAC,EAAE;wBAChE,SAAQ;qBACT;iBACF;gBAED,IAAI,QAAQ,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,QAAQ,EAAE;oBAC/C,SAAQ;iBACT;gBAED,QAAQ,CAAC,IAAI,CAAC,IAAI,sBAAsB,CAAC,MAAM,EAAE,IAAI,EAAE,GAAG,CAAC,CAAC,CAAA;aAC7D;YACD,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,EAAE,GAAG,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,uDAAuD;QACvD,mBAAmB;QACnB,IAAI,GAAG,CAAC,KAAK,CAAC,UAAU,KAAK,GAAG,EAAE;YAChC,MAAM,KAAK,GAAG,MAAM,eAAe,CAAC,OAAO,EAAE,GAAG,CAAC,CAAA;YACjD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;YACrD,OAAO,EAAE,KAAK,EAAE,cAAc,EAAE,CAAA;SACjC;aAAM;YACL,OAAO,KAAK,CAAC,oBAAoB,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;SACjD;IACH,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,2DAA2D;IAC3D,WAAW,CAAC,KAAa;;QACvB,OAAO,MAAA,IAAI,CAAC,SAAS,0CAAE,QAAQ,CAAC,KAAK,CAAC,CAAA;IACxC,CAAC;CACF"}

package/esm/BamAdapter/BamSlightlyLazyFeature.js CHANGED Viewed

@@ -63,9 +63,9 @@ export default class BamSlightlyLazyFeature {
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     get(field) {
         const methodName = `_get_${field}`;
-        // @ts-ignore
+        // @ts-expect-error
         if (this[methodName]) {
-            // @ts-ignore
+            // @ts-expect-error
             return this[methodName]();
         }
         return this.record.get(field);

package/esm/BamAdapter/BamSlightlyLazyFeature.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"BamSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/BamAdapter/BamSlightlyLazyFeature.ts"],"names":[],"mappings":"AAOA,SAAS;AACT,OAAO,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAA;AAG1D,MAAM,CAAC,OAAO,OAAO,sBAAsB;IACzC,wEAAwE;IACxE,iFAAiF;IACjF,YACU,MAAiB,EACjB,OAAmB,EACnB,GAAY;QAFZ,WAAM,GAAN,MAAM,CAAW;QACjB,YAAO,GAAP,OAAO,CAAY;QACnB,QAAG,GAAH,GAAG,CAAS;IACnB,CAAC;IAEJ,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IACrE,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IACpD,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,CAC5B,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAA;IAC9B,CAAC;IAED,GAAG,KAAI,CAAC;IAER,IAAI;QACF,MAAM,UAAU,GAAG,MAAM,CAAC,mBAAmB,CAC3C,sBAAsB,CAAC,SAAS,CACjC,CAAA;QAED,OAAO;YACL,GAAG,IAAI,GAAG,CACR,UAAU;iBACP,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;gBACxB,IAAI,KAAK,iBAAiB;gBAC1B,IAAI,KAAK,WAAW,CACvB;iBACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;iBAClD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAC/B;SACF,CAAA;IACH,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAA;IACjD,CAAC;IAED,8DAA8D;IAC9D,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,~~aAAa~~;~~QACb~~,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,~~aAAa~~;~~YACb~~,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC/B,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAA;IACvD,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,OAAO,aAAa,CAClB,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EACjB,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EACd,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EACf,IAAI,CAAC,GAAG,EACR,IAAI,CAAC,OAAO,EAAE,CACf,CAAA;IACH,CAAC;IAED,YAAY;QACV,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAA;QACrC,OAAO,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;IAC3C,CAAC;CACF"}
1	+ {"version":3,"file":"BamSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/BamAdapter/BamSlightlyLazyFeature.ts"],"names":[],"mappings":"AAOA,SAAS;AACT,OAAO,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAA;AAG1D,MAAM,CAAC,OAAO,OAAO,sBAAsB;IACzC,wEAAwE;IACxE,iFAAiF;IACjF,YACU,MAAiB,EACjB,OAAmB,EACnB,GAAY;QAFZ,WAAM,GAAN,MAAM,CAAW;QACjB,YAAO,GAAP,OAAO,CAAY;QACnB,QAAG,GAAH,GAAG,CAAS;IACnB,CAAC;IAEJ,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IACrE,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE;YAC3B,CAAC,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IACpD,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,CAC5B,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAA;IAC9B,CAAC;IAED,GAAG,KAAI,CAAC;IAER,IAAI;QACF,MAAM,UAAU,GAAG,MAAM,CAAC,mBAAmB,CAC3C,sBAAsB,CAAC,SAAS,CACjC,CAAA;QAED,OAAO;YACL,GAAG,IAAI,GAAG,CACR,UAAU;iBACP,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;gBACxB,IAAI,KAAK,iBAAiB;gBAC1B,IAAI,KAAK,WAAW,CACvB;iBACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;iBAClD,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAC/B;SACF,CAAA;IACH,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAA;IACjD,CAAC;IAED,8DAA8D;IAC9D,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,mBAAmB;QACnB,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,mBAAmB;YACnB,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;IAC/B,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAA;IACvD,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,OAAO,aAAa,CAClB,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EACjB,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EACd,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,EACf,IAAI,CAAC,GAAG,EACR,IAAI,CAAC,OAAO,EAAE,CACf,CAAA;IACH,CAAC;IAED,YAAY;QACV,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,CAAA;QACrC,OAAO,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;IAC3C,CAAC;CACF"}

package/esm/CramAdapter/CramAdapter.js CHANGED Viewed

@@ -77,7 +77,7 @@ export default class CramAdapter extends BaseFeatureDataAdapter {
             const trimEnd = Math.min(end - chunkStart, chunkEnd - chunkStart);
             const trimLength = trimEnd - trimStart;
             const chunkSeq = chunk.get('seq') || chunk.get('residues');
-            return chunkSeq.substr(trimStart, trimLength);
+            return chunkSeq.slice(trimStart, trimStart + trimLength);
         })
             .join('');
         if (sequence.length !== end - start) {
@@ -175,7 +175,7 @@ export default class CramAdapter extends BaseFeatureDataAdapter {
             });
             if (tagFilter) {
                 filtered = filtered.filter(record => {
-                    // @ts-ignore
+                    // @ts-expect-error
                     const val = record[tagFilter.tag];
                     return val === '*' ? val !== undefined : val === tagFilter.value;
                 });

package/esm/CramAdapter/CramAdapter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"CramAdapter.js","sourceRoot":"","sources":["../../src/CramAdapter/CramAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,eAAe,EAAc,MAAM,YAAY,CAAA;AACnE,OAAO,EACL,sBAAsB,GAGvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,gBAAgB,EAAmB,MAAM,oBAAoB,CAAA;AACtE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACrC,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAe/D,MAAM,CAAC,OAAO,OAAO,WAAY,SAAQ,sBAAsB;IAA/D;;QACE,cAAS,GAAW,EAAE,CAAA;QAgBtB,gFAAgF;QACxE,2BAAsB,GAAa,EAAE,CAAA;IAwQ/C,CAAC;IAtQQ,KAAK,CAAC,YAAY;QACvB,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAE7B,MAAM,IAAI,GAAG,IAAI,eAAe,CAAC;YAC/B,cAAc,EAAE,YAAY,CAAC,YAAY,EAAE,EAAE,CAAC;YAC9C,KAAK,EAAE,IAAI,SAAS,CAAC,EAAE,UAAU,EAAE,YAAY,CAAC,YAAY,EAAE,EAAE,CAAC,EAAE,CAAC;YACpE,QAAQ,EAAE,CAAC,GAAG,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;YAC7C,gBAAgB,EAAE,KAAK;YACvB,cAAc,EAAE,SAAW,EAAE,kDAAkD;SAChF,CAAC,CAAA;QAEF,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QAC/C,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAEpD,OAAO;YACL,IAAI;YACJ,eAAe,EAAE,UAAU,CAAC,WAAkC;SAC/D,CAAA;IACH,CAAC;IAEM,KAAK,CAAC,SAAS;QACpB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;IAClC,CAAC;IAEO,KAAK,CAAC,QAAQ,CACpB,KAAa,EACb,KAAa,EACb,GAAW;QAEX,KAAK,IAAI,CAAC,CAAA,CAAC,2CAA2C;QAEtD,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;QAC1E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;SAC3B;QAED,MAAM,SAAS,GAAG,MAAM,cAAc,CACpC,eAAe;aACZ,WAAW,CAAC;YACX,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC;aACD,IAAI,CAAC,OAAO,EAAE,CAAC,CACnB,CAAA;QAED,MAAM,QAAQ,GAAG,SAAS;aACvB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,GAAG,CAAC,KAAK,CAAC,EAAE;YACX,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,OAAO,QAAQ,CAAC,~~MAAM~~,CAAC,SAAS,EAAE,UAAU,CAAC,CAAA;~~QAC/C~~,CAAC,CAAC;aACD,IAAI,CAAC,EAAE,CAAC,CAAA;QAEX,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACnC,cAAc,CAAC,mBAAmB,CAAC,CAAA;QACnC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;QACrB,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,CAAA;QAEhD,oDAAoD;QACpD,2CAA2C;QAC3C,MAAM,QAAQ,GAAa,EAAE,CAAA;QAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;QAC3C,SAAS;aACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;YACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;oBACrB,uBAAuB;oBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;oBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;oBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;iBAC1B;YACH,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QAEJ,MAAM,UAAU,GAAG,SAAS;aACzB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,GAAG,CAAC,MAAM,CAAC,EAAE,WAAC,OAAA,MAAA,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,KAAK,IAAI,CAAC,0CAAE,KAAK,CAAA,EAAA,CAAC,CAAA;QAEpE,MAAM,IAAI,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,CAAA;QAC/C,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAA;QACrB,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,CAAA;IACrC,CAAC;IAEO,KAAK,CAAC,KAAK,CAAC,IAAkB;QACpC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,OAAO,SAAS,CAAC,QAAQ,CAAA;IAC3B,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,OAAe;QACzB,IAAI,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YAC3B,OAAO,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAA;SACxC;QACD,IAAI,IAAI,CAAC,cAAc,EAAE;YACvB,OAAO,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;SAC5C;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,KAAa;;QACvB,OAAO,CAAA,MAAA,IAAI,CAAC,SAAS,CAAC,QAAQ,0CAAG,KAAK,CAAC,MAAI,MAAA,IAAI,CAAC,cAAc,0CAAG,KAAK,CAAC,CAAA,CAAA;IACzE,CAAC;IAED,mBAAmB,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAA;IAC3C,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAEC;QAED,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QAEvD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAEvC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,IAAI,KAAK,KAAK,SAAS,EAAE;gBACvB,OAAO,CAAC,IAAI,CAAC,iBAAiB,EAAE,OAAO,CAAC,CAAA;gBACxC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,IAAI,eAAe,EAAE;gBACnB,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAG,eAAe,CAAA;aACrD;YACD,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;YAChE,gBAAgB,CAAC,MAAM,CAAC,CAAA;YACxB,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,IAAI,QAAQ,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;gBACrC,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,OAAO,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAA;YACxE,CAAC,CAAC,CAAA;YAEF,IAAI,SAAS,EAAE;gBACb,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;oBAClC,~~aAAa~~;~~oBACb~~,MAAM,GAAG,GAAG,MAAM,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACjC,OAAO,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAA;gBAClE,CAAC,CAAC,CAAA;aACH;YAED,IAAI,QAAQ,EAAE;gBACZ,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAA;aACnE;YAED,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;gBACxB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAAC,CAAA;YACjD,CAAC,CAAC,CAAA;YACF,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,mBAAmB,CAAC,MAAkB;QACpC,OAAO,IAAI,uBAAuB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAClD,CAAC;IAED,wEAAwE;IACxE,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;QACvD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;QACrD,OAAO;YACL,KAAK;YACL,cAAc;SACf,CAAA;IACH,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,eAAe,CAAC,OAAiB,EAAE,KAAmB;QAClE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,MAAM,YAAY,GAAG,MAAM,OAAO,CAAC,GAAG,CACpC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;YACnB,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;YACtC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,OAAO,KAAK,KAAK,SAAS;gBACxB,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC;gBAClD,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,CAAC,CAAA;QACzB,CAAC,CAAC,CACH,CAAA;QAED,OAAO,YAAY,CAAC,IAAI,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,CAAA;IAClE,CAAC;CACF"}
1	+ {"version":3,"file":"CramAdapter.js","sourceRoot":"","sources":["../../src/CramAdapter/CramAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,eAAe,EAAc,MAAM,YAAY,CAAA;AACnE,OAAO,EACL,sBAAsB,GAGvB,MAAM,yCAAyC,CAAA;AAChD,OAAO,EAAE,gBAAgB,EAAmB,MAAM,oBAAoB,CAAA;AACtE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACrC,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAe/D,MAAM,CAAC,OAAO,OAAO,WAAY,SAAQ,sBAAsB;IAA/D;;QACE,cAAS,GAAW,EAAE,CAAA;QAgBtB,gFAAgF;QACxE,2BAAsB,GAAa,EAAE,CAAA;IAwQ/C,CAAC;IAtQQ,KAAK,CAAC,YAAY;QACvB,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,cAAc,CAAC,CAAA;QACjD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,IAAI,CAAC,YAAY,EAAE;YACjB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAE7B,MAAM,IAAI,GAAG,IAAI,eAAe,CAAC;YAC/B,cAAc,EAAE,YAAY,CAAC,YAAY,EAAE,EAAE,CAAC;YAC9C,KAAK,EAAE,IAAI,SAAS,CAAC,EAAE,UAAU,EAAE,YAAY,CAAC,YAAY,EAAE,EAAE,CAAC,EAAE,CAAC;YACpE,QAAQ,EAAE,CAAC,GAAG,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;YAC7C,gBAAgB,EAAE,KAAK;YACvB,cAAc,EAAE,SAAW,EAAE,kDAAkD;SAChF,CAAC,CAAA;QAEF,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;SAC5C;QAED,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;QAC/C,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAEpD,OAAO;YACL,IAAI;YACJ,eAAe,EAAE,UAAU,CAAC,WAAkC;SAC/D,CAAA;IACH,CAAC;IAEM,KAAK,CAAC,SAAS;QACpB,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE;YACpB,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC9C,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;gBAC3B,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,IAAkB;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAA;IAClC,CAAC;IAEO,KAAK,CAAC,QAAQ,CACpB,KAAa,EACb,KAAa,EACb,GAAW;QAEX,KAAK,IAAI,CAAC,CAAA,CAAC,2CAA2C;QAEtD,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,mBAAmB,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;QAC1E,IAAI,CAAC,OAAO,EAAE;YACZ,MAAM,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;SAC3B;QAED,MAAM,SAAS,GAAG,MAAM,cAAc,CACpC,eAAe;aACZ,WAAW,CAAC;YACX,OAAO;YACP,KAAK;YACL,GAAG;YACH,YAAY,EAAE,EAAE;SACjB,CAAC;aACD,IAAI,CAAC,OAAO,EAAE,CAAC,CACnB,CAAA;QAED,MAAM,QAAQ,GAAG,SAAS;aACvB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;aAC/C,GAAG,CAAC,KAAK,CAAC,EAAE;YACX,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;YACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;YACjC,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,UAAU,EAAE,CAAC,CAAC,CAAA;YACjD,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,UAAU,EAAE,QAAQ,GAAG,UAAU,CAAC,CAAA;YACjE,MAAM,UAAU,GAAG,OAAO,GAAG,SAAS,CAAA;YACtC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;YAC1D,OAAO,QAAQ,CAAC,KAAK,CAAC,SAAS,EAAE,SAAS,GAAG,UAAU,CAAC,CAAA;QAC1D,CAAC,CAAC;aACD,IAAI,CAAC,EAAE,CAAC,CAAA;QAEX,IAAI,QAAQ,CAAC,MAAM,KAAK,GAAG,GAAG,KAAK,EAAE;YACnC,MAAM,IAAI,KAAK,CACb,mCAAmC,OAAO,IAAI,CAC5C,KAAK,GAAG,CAAC,CACV,CAAC,cAAc,EAAE,IAAI,GAAG,CAAC,cAAc,EAAE,aAAa,QAAQ,CAAC,MAAM,CAAC,cAAc,EAAE,oCAAoC,CACzH,GAAG,GAAG,KAAK,CACZ,CAAC,cAAc,EAAE,EAAE,CACrB,CAAA;SACF;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,KAAK,CAAC,QAAQ,CAAC,IAAkB;QACvC,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACnC,cAAc,CAAC,mBAAmB,CAAC,CAAA;QACnC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;QACrB,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,CAAA;QAEhD,oDAAoD;QACpD,2CAA2C;QAC3C,MAAM,QAAQ,GAAa,EAAE,CAAA;QAC7B,MAAM,QAAQ,GAA2B,EAAE,CAAA;QAC3C,SAAS;aACN,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,OAAO,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;YACzB,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;gBACzB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE;oBACrB,uBAAuB;oBACvB,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;oBAC1B,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;oBACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;iBAC1B;YACH,CAAC,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;QAEJ,MAAM,UAAU,GAAG,SAAS;aACzB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC;aAC3B,GAAG,CAAC,MAAM,CAAC,EAAE,WAAC,OAAA,MAAA,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,GAAG,KAAK,IAAI,CAAC,0CAAE,KAAK,CAAA,EAAA,CAAC,CAAA;QAEpE,MAAM,IAAI,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,CAAA;QAC/C,cAAc,CAAC,EAAE,CAAC,CAAA;QAClB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAA;QACrB,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,CAAA;IACrC,CAAC;IAEO,KAAK,CAAC,KAAK,CAAC,IAAkB;QACpC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;YAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;gBAC1C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,IAAkB;QAClC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YACvB,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAA;SACjD;QACD,OAAO,SAAS,CAAC,QAAQ,CAAA;IAC3B,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,OAAe;QACzB,IAAI,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE;YAC3B,OAAO,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAA;SACxC;QACD,IAAI,IAAI,CAAC,cAAc,EAAE;YACvB,OAAO,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;SAC5C;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,mEAAmE;IACnE,gEAAgE;IAChE,WAAW,CAAC,KAAa;;QACvB,OAAO,CAAA,MAAA,IAAI,CAAC,SAAS,CAAC,QAAQ,0CAAG,KAAK,CAAC,MAAI,MAAA,IAAI,CAAC,cAAc,0CAAG,KAAK,CAAC,CAAA,CAAA;IACzE,CAAC;IAED,mBAAmB,CAAC,KAAa;QAC/B,OAAO,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAA;IAC3C,CAAC;IAED,WAAW,CACT,MAA6C,EAC7C,IAEC;QAED,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAClE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;QAEvD,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAEvC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,IAAI,KAAK,KAAK,SAAS,EAAE;gBACvB,OAAO,CAAC,IAAI,CAAC,iBAAiB,EAAE,OAAO,CAAC,CAAA;gBACxC,QAAQ,CAAC,QAAQ,EAAE,CAAA;gBACnB,OAAM;aACP;YAED,IAAI,eAAe,EAAE;gBACnB,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAG,eAAe,CAAA;aACrD;YACD,cAAc,CAAC,wBAAwB,CAAC,CAAA;YACxC,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,CAAA;YAChE,gBAAgB,CAAC,MAAM,CAAC,CAAA;YACxB,MAAM,EACJ,WAAW,GAAG,CAAC,EACf,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,GACT,GAAG,QAAQ,IAAI,EAAE,CAAA;YAElB,IAAI,QAAQ,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;gBACrC,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAA;gBAC1B,OAAO,CAAC,KAAK,GAAG,WAAW,CAAC,KAAK,WAAW,IAAI,CAAC,CAAC,KAAK,GAAG,WAAW,CAAC,CAAA;YACxE,CAAC,CAAC,CAAA;YAEF,IAAI,SAAS,EAAE;gBACb,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;oBAClC,mBAAmB;oBACnB,MAAM,GAAG,GAAG,MAAM,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;oBACjC,OAAO,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,KAAK,SAAS,CAAC,KAAK,CAAA;gBAClE,CAAC,CAAC,CAAA;aACH;YAED,IAAI,QAAQ,EAAE;gBACZ,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAA;aACnE;YAED,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;gBACxB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAAC,CAAA;YACjD,CAAC,CAAC,CAAA;YACF,cAAc,CAAC,EAAE,CAAC,CAAA;YAClB,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,aAAa,EAAC,gBAAgB,IAAS,CAAC;IAExC,mBAAmB,CAAC,MAAkB;QACpC,OAAO,IAAI,uBAAuB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAClD,CAAC;IAED,wEAAwE;IACxE,KAAK,CAAC,oBAAoB,CAAC,OAAiB,EAAE,IAAkB;QAC9D,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;QACvD,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,CAAA;QACrD,OAAO;YACL,KAAK;YACL,cAAc;SACf,CAAA;IACH,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,eAAe,CAAC,OAAiB,EAAE,KAAmB;QAClE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACvC,MAAM,YAAY,GAAG,MAAM,OAAO,CAAC,GAAG,CACpC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;YACnB,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,MAAM,CAAA;YACtC,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YACvC,OAAO,KAAK,KAAK,SAAS;gBACxB,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC;gBAClD,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,CAAC,CAAA;QACzB,CAAC,CAAC,CACH,CAAA;QAED,OAAO,YAAY,CAAC,IAAI,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,CAAA;IAClE,CAAC;CACF"}

package/esm/CramAdapter/CramSlightlyLazyFeature.js CHANGED Viewed

@@ -92,9 +92,9 @@ export default class CramSlightlyLazyFeature {
     }
     get(field) {
         const methodName = `_get_${field}`;
-        // @ts-ignore
+        // @ts-expect-error
         if (this[methodName]) {
-            // @ts-ignore
+            // @ts-expect-error
             return this[methodName]();
         }
         return undefined;

package/esm/CramAdapter/CramSlightlyLazyFeature.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"CramSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/CramAdapter/CramSlightlyLazyFeature.ts"],"names":[],"mappings":"AASA,OAAO,EAAE,mBAAmB,EAAE,wBAAwB,EAAE,MAAM,QAAQ,CAAA;AAEtE,MAAM,CAAC,OAAO,OAAO,uBAAuB;IAC1C,wEAAwE;IACxE,iFAAiF;IACjF,YAAoB,MAAkB,EAAU,MAAmB;QAA/C,WAAM,GAAN,MAAM,CAAY;QAAU,WAAM,GAAN,MAAM,CAAa;IAAG,CAAC;IAEvE,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAA;IAC7B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,CAAA;IACvC,CAAC;IAED,QAAQ;;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,WAAW,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAA;IACxE,CAAC;IAED,uBAAuB;QACrB,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IACjC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,CAAA;IACnC,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,cAAc;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAA;QAC3C,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACrD,CAAC;IAED,SAAS;QACP,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACpD,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,aAAa,CAAA;IAClC,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACxD,CAAC;IAED,cAAc;QACZ,OAAO,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAA;IAC3B,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,oBAAoB;QAClB,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,IAAI,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IAC/D,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC;YACtD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,IACrD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,cACnB,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;;QACX,OAAO,MAAA,IAAI,CAAC,MAAM,CAAC,IAAI,0CAAE,cAAc,CAAA;IACzC,CAAC;IAED,SAAS;QACP,MAAM,EAAE,GAAG,IAAI,CAAC,cAAc,EAAE,CAAA;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,CAAA;QAC5B,4DAA4D;QAC5D,OAAO,EAAE,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAA;IAClD,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,kDAAkD;IAClD,UAAU;QACR,OAAO,mBAAmB,CACxB,IAAI,CAAC,MAAM,CAAC,YAAY,EACxB,IAAI,CAAC,MAAM,CAAC,cAAc,EAC1B,IAAI,CAAC,MAAM,CAAC,UAAU,EACtB,IAAI,CAAC,MAAM,CAAC,UAAU,CACvB,CAAA;IACH,CAAC;IAED,IAAI;QACF,OAAO,MAAM,CAAC,mBAAmB,CAAC,uBAAuB,CAAC,SAAS,CAAC;aACjE,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;YACxB,IAAI,KAAK,iBAAiB;YAC1B,IAAI,KAAK,yBAAyB,CACrC;aACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAA;IACvD,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAA;IACpD,CAAC;IAED,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,~~aAAa~~;~~QACb~~,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,~~aAAa~~;~~YACb~~,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,GAAG,KAAI,CAAC;IAER,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,YAAY;QACV,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;QACzC,IAAI,UAAU,CAAC,MAAM,EAAE;YACrB,MAAM,MAAM,GACV,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;gBACvB,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC;gBACnC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YAChC,IAAI,IAAI,KAAK,UAAU,IAAI,IAAI,KAAK,UAAU,EAAE;gBAC9C,OAAO,OAAO,CAAA;aACf;SACF;QACD,OAAO,CAAC,CAAA;IACV,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC7C,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,EAAE,CAAA;QAC3B,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QAC/B,OAAO,wBAAwB,CAAC,YAAY,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IAC5D,CAAC;CACF"}
1	+ {"version":3,"file":"CramSlightlyLazyFeature.js","sourceRoot":"","sources":["../../src/CramAdapter/CramSlightlyLazyFeature.ts"],"names":[],"mappings":"AASA,OAAO,EAAE,mBAAmB,EAAE,wBAAwB,EAAE,MAAM,QAAQ,CAAA;AAEtE,MAAM,CAAC,OAAO,OAAO,uBAAuB;IAC1C,wEAAwE;IACxE,iFAAiF;IACjF,YAAoB,MAAkB,EAAU,MAAmB;QAA/C,WAAM,GAAN,MAAM,CAAY;QAAU,WAAM,GAAN,MAAM,CAAa;IAAG,CAAC;IAEvE,SAAS;QACP,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAA;IAC7B,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,CAAA;IACvC,CAAC;IAED,QAAQ;;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,GAAG,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,WAAW,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAA;IACxE,CAAC;IAED,uBAAuB;QACrB,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IACjC,CAAC;IAED,SAAS;QACP,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,CAAA;IACnC,CAAC;IAED,UAAU;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAA;IAC1B,CAAC;IAED,WAAW;QACT,OAAO,IAAI,CAAC,MAAM,CAAC,qBAAqB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrD,CAAC;IAED,cAAc;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAA;QAC3C,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACrD,CAAC;IAED,SAAS;QACP,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACpD,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,MAAM,CAAC,aAAa,CAAA;IAClC,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IACxD,CAAC;IAED,cAAc;QACZ,OAAO,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAA;IAC3B,CAAC;IAED,qBAAqB;QACnB,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,SAAS,CAAA;IAC9E,CAAC;IAED,oBAAoB;QAClB,OAAO,IAAI,CAAC,MAAM,CAAC,cAAc,IAAI,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;IAC/D,CAAC;IAED,aAAa;QACX,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC;YACtD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,0BAA0B;QACxB,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI;YACrB,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,IACrD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,cACnB,EAAE;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,aAAa;;QACX,OAAO,MAAA,IAAI,CAAC,MAAM,CAAC,IAAI,0CAAE,cAAc,CAAA;IACzC,CAAC;IAED,SAAS;QACP,MAAM,EAAE,GAAG,IAAI,CAAC,cAAc,EAAE,CAAA;QAChC,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,CAAA;QAC5B,4DAA4D;QAC5D,OAAO,EAAE,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,GAAG,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAA;IAClD,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAA;IACnC,CAAC;IAED,kDAAkD;IAClD,UAAU;QACR,OAAO,mBAAmB,CACxB,IAAI,CAAC,MAAM,CAAC,YAAY,EACxB,IAAI,CAAC,MAAM,CAAC,cAAc,EAC1B,IAAI,CAAC,MAAM,CAAC,UAAU,EACtB,IAAI,CAAC,MAAM,CAAC,UAAU,CACvB,CAAA;IACH,CAAC;IAED,IAAI;QACF,OAAO,MAAM,CAAC,mBAAmB,CAAC,uBAAuB,CAAC,SAAS,CAAC;aACjE,MAAM,CACL,IAAI,CAAC,EAAE,CACL,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;YACxB,IAAI,KAAK,iBAAiB;YAC1B,IAAI,KAAK,yBAAyB,CACrC;aACA,GAAG,CAAC,UAAU,CAAC,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAA;IACvD,CAAC;IAED,EAAE;QACA,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,EAAE,CAAA;IACpD,CAAC;IAED,GAAG,CAAC,KAAa;QACf,MAAM,UAAU,GAAG,QAAQ,KAAK,EAAE,CAAA;QAClC,mBAAmB;QACnB,IAAI,IAAI,CAAC,UAAU,CAAC,EAAE;YACpB,mBAAmB;YACnB,OAAO,IAAI,CAAC,UAAU,CAAC,EAAE,CAAA;SAC1B;QACD,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,MAAM;QACJ,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,GAAG,KAAI,CAAC;IAER,aAAa;QACX,OAAO,KAAK,CAAA;IACd,CAAC;IAED,YAAY;QACV,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;QACzC,IAAI,UAAU,CAAC,MAAM,EAAE;YACrB,MAAM,MAAM,GACV,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;gBACvB,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC;gBACnC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YAChC,IAAI,IAAI,KAAK,UAAU,IAAI,IAAI,KAAK,UAAU,EAAE;gBAC9C,OAAO,OAAO,CAAA;aACf;SACF;QACD,OAAO,CAAC,CAAA;IACV,CAAC;IAED,MAAM;QACJ,OAAO;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI,CAAC,IAAI,EAAE;iBACR,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;iBAC1B,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,CACvC;YACD,QAAQ,EAAE,IAAI,CAAC,EAAE,EAAE;SACpB,CAAA;IACH,CAAC;IAED,eAAe;QACb,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC7C,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,EAAE,CAAA;QAC3B,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QAC/B,OAAO,wBAAwB,CAAC,YAAY,EAAE,KAAK,EAAE,IAAI,CAAC,CAAA;IAC5D,CAAC;CACF"}

package/esm/CramAdapter/util.js CHANGED Viewed

@@ -133,14 +133,14 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
         for (let i = 0; i < readFeatures.length; i++) {
             const { code, refPos, sub, data } = readFeatures[i];
             sublen = refPos - lastPos;
-            seq += ref.substring(lastPos - refStart, refPos - refStart);
+            seq += ref.slice(lastPos - refStart, refPos - refStart);
             lastPos = refPos;
             if (insLen > 0 && sublen) {
                 cigar += `${insLen}I`;
                 insLen = 0;
             }
             if (oplen && op !== 'M') {
-                cigar += oplen + op;
+                cigar += `${oplen}${op}`;
                 oplen = 0;
             }
             if (sublen) {
@@ -171,7 +171,7 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
                 // Deletion or Ref Skip
                 lastPos += data;
                 if (oplen) {
-                    cigar += oplen + op;
+                    cigar += `${oplen}${op}`;
                 }
                 cigar += data + code;
                 oplen = 0;
@@ -180,7 +180,7 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
                 // Insertion or soft-clip
                 seq += data;
                 if (oplen) {
-                    cigar += oplen + op;
+                    cigar += `${oplen}${op}`;
                 }
                 cigar += data.length + code;
                 oplen = 0;
@@ -189,7 +189,7 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
                 // Single base insertion
                 // seq += data
                 if (oplen) {
-                    cigar += oplen + op;
+                    cigar += `${oplen}${op}`;
                 }
                 insLen++;
                 seq += data;
@@ -198,14 +198,14 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
             else if (code === 'P') {
                 // Padding
                 if (oplen) {
-                    cigar += oplen + op;
+                    cigar += `${oplen}${op}`;
                 }
                 cigar += `${data}P`;
             }
             else if (code === 'H') {
                 // Hard clip
                 if (oplen) {
-                    cigar += oplen + op;
+                    cigar += `${oplen}${op}`;
                 }
                 cigar += `${data}H`;
                 oplen = 0;
@@ -217,9 +217,9 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
     }
     if (seq.length !== readLen) {
         sublen = readLen - seq.length;
-        seq += ref.substring(lastPos - refStart, lastPos - refStart + sublen);
+        seq += ref.slice(lastPos - refStart, lastPos - refStart + sublen);
         if (oplen && op !== 'M') {
-            cigar += oplen + op;
+            cigar += `${oplen}${op}`;
             oplen = 0;
         }
         op = 'M';
@@ -229,7 +229,7 @@ export function readFeaturesToCIGAR(readFeatures, alignmentStart, readLen, refRe
         cigar += `${insLen}I`;
     }
     if (oplen) {
-        cigar += oplen + op;
+        cigar += `${oplen}${op}`;
     }
     return cigar;
 }

package/esm/CramAdapter/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/CramAdapter/util.ts"],"names":[],"mappings":"AAeA,MAAM,UAAU,wBAAwB,CACtC,YAA0B,EAC1B,KAAa,EACb,IAAsB;IAEtB,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,EAAE,CAAA;KACV;IACD,MAAM,UAAU,GAAe,IAAI,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;IAC7D,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,OAAO,GAAG,KAAK,CAAA;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC5C,MAAM,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;QACzB,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;QACvC,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;QACzB,OAAO,GAAG,MAAM,CAAA;QAEhB,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;YACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,MAAM,EAAE;gBACjB,MAAM,EAAE,CAAC;aACV,CAAA;YACD,MAAM,GAAG,CAAC,CAAA;SACX;QACD,MAAM,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,GAAG,KAAK,CAAA;QAE7B,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,eAAe;YACf,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,IAAI,EAAE,GAAG;gBACT,IAAI,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAG,GAAG,GAAG,CAAC,CAAC;gBACrB,OAAO,EAAE,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,WAAW,EAAE;gBAC3B,IAAI,EAAE,UAAU;aACjB,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE;gBACtB,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,iBAAiB;YACjB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,MAAM;gBACZ,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAA;YACvB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,UAAU;SACX;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAA;YAChB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,WAAW;YACX,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,mBAAmB;SACpB;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yEAAyE;YACzE,gCAAgC;YAChC,MAAM,EAAE,CAAA;SACT;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,uBAAuB;SACxB;KACF;IAED,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;YAChB,KAAK,EAAE,MAAM;YACb,IAAI,EAAE,WAAW;YACjB,IAAI,EAAE,GAAG,MAAM,EAAE;YACjB,MAAM,EAAE,CAAC;SACV,CAAA;QACD,MAAM,GAAG,CAAC,CAAA;KACX;IAED,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;AAC/B,CAAC;AAED,MAAM,UAAU,mBAAmB,CACjC,YAA0B,EAC1B,cAAsB,EACtB,OAAe,EACf,SAA0C;IAE1C,IAAI,GAAG,GAAG,EAAE,CAAA;IACZ,IAAI,KAAK,GAAG,EAAE,CAAA;IACd,IAAI,EAAE,GAAG,GAAG,CAAA;IACZ,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,IAAI,CAAC,SAAS,EAAE;QACd,OAAO,EAAE,CAAA;KACV;IAED,yCAAyC;IACzC,MAAM,GAAG,GAAG,SAAS,CAAC,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAA;IAChC,IAAI,OAAO,GAAG,cAAc,CAAA;IAC5B,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,YAAY,KAAK,SAAS,EAAE;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC5C,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;YACnD,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;YACzB,GAAG,IAAI,GAAG,CAAC,~~SAAS~~,CAAC,OAAO,GAAG,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAC,CAAA;~~YAC3D~~,OAAO,GAAG,MAAM,CAAA;YAEhB,IAAI,MAAM,GAAG,CAAC,IAAI,MAAM,EAAE;gBACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;gBACrB,MAAM,GAAG,CAAC,CAAA;aACX;YACD,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;gBACvB,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~gBACnB~~,KAAK,GAAG,CAAC,CAAA;aACV;YACD,IAAI,MAAM,EAAE;gBACV,EAAE,GAAG,GAAG,CAAA;gBACR,KAAK,IAAI,MAAM,CAAA;aAChB;YAED,IAAI,IAAI,KAAK,GAAG,EAAE;gBAChB,oCAAoC;gBACpC,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,GAAG,CAAC,CAAA;gBACzC,GAAG,IAAI,KAAK,CAAA;gBACZ,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBACvB,KAAK,IAAI,KAAK,CAAC,MAAM,CAAA;aACtB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,6BAA6B;gBAC7B,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,eAAe;gBACf,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,uBAAuB;gBACvB,OAAO,IAAI,IAAI,CAAA;gBACf,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~iBACpB~~;gBACD,KAAK,IAAI,IAAI,GAAG,IAAI,CAAA;gBACpB,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,yBAAyB;gBACzB,GAAG,IAAI,IAAI,CAAA;gBACX,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~iBACpB~~;gBACD,KAAK,IAAI,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;gBAC3B,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,wBAAwB;gBACxB,cAAc;gBACd,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~iBACpB~~;gBACD,MAAM,EAAE,CAAA;gBACR,GAAG,IAAI,IAAI,CAAA;gBACX,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,UAAU;gBACV,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~iBACpB~~;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;aACpB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,YAAY;gBACZ,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~iBACpB~~;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;gBACnB,KAAK,GAAG,CAAC,CAAA;aACV,CAAC,cAAc;SACjB;KACF;SAAM;QACL,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;KAC9B;IACD,IAAI,GAAG,CAAC,MAAM,KAAK,OAAO,EAAE;QAC1B,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;QAC7B,GAAG,IAAI,GAAG,CAAC,~~SAAS~~,CAAC,OAAO,GAAG,QAAQ,EAAE,OAAO,GAAG,QAAQ,GAAG,MAAM,CAAC,CAAA;~~QAErE~~,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;YACvB,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~YACnB~~,KAAK,GAAG,CAAC,CAAA;SACV;QACD,EAAE,GAAG,GAAG,CAAA;QACR,KAAK,IAAI,MAAM,CAAA;KAChB;IACD,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;KACtB;IACD,IAAI,KAAK,EAAE;QACT,KAAK,IAAI,KAAK,GAAG,EAAE,CAAA;~~KACpB~~;IAED,OAAO,KAAK,CAAA;AACd,CAAC"}
1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../src/CramAdapter/util.ts"],"names":[],"mappings":"AAeA,MAAM,UAAU,wBAAwB,CACtC,YAA0B,EAC1B,KAAa,EACb,IAAsB;IAEtB,IAAI,CAAC,YAAY,EAAE;QACjB,OAAO,EAAE,CAAA;KACV;IACD,MAAM,UAAU,GAAe,IAAI,KAAK,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;IAC7D,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,OAAO,GAAG,KAAK,CAAA;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC5C,MAAM,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;QACzB,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;QACvC,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;QACzB,OAAO,GAAG,MAAM,CAAA;QAEhB,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;YACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,MAAM,EAAE;gBACjB,MAAM,EAAE,CAAC;aACV,CAAA;YACD,MAAM,GAAG,CAAC,CAAA;SACX;QACD,MAAM,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,GAAG,KAAK,CAAA;QAE7B,IAAI,IAAI,KAAK,GAAG,EAAE;YAChB,eAAe;YACf,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,MAAM,EAAE,CAAC;gBACT,IAAI,EAAE,GAAG;gBACT,IAAI,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAG,GAAG,GAAG,CAAC,CAAC;gBACrB,OAAO,EAAE,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,WAAW,EAAE;gBAC3B,IAAI,EAAE,UAAU;aACjB,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,WAAW;gBACjB,IAAI,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE;gBACtB,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,iBAAiB;YACjB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,MAAM;gBACZ,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAA;YACvB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,UAAU;SACX;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,YAAY;YACZ,MAAM,GAAG,GAAG,IAAI,CAAA;YAChB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,IAAI,GAAG,EAAE;gBACf,OAAO,EAAE,GAAG;gBACZ,MAAM,EAAE,CAAC;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,WAAW;YACX,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;gBAChB,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,IAAI;gBACZ,KAAK,EAAE,MAAM;gBACb,IAAI,EAAE,GAAG;aACV,CAAA;SACF;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,mBAAmB;SACpB;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yBAAyB;SAC1B;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,yEAAyE;YACzE,gCAAgC;YAChC,MAAM,EAAE,CAAA;SACT;aAAM,IAAI,IAAI,KAAK,GAAG,EAAE;YACvB,uBAAuB;SACxB;KACF;IAED,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,UAAU,CAAC,CAAC,EAAE,CAAC,GAAG;YAChB,KAAK,EAAE,MAAM;YACb,IAAI,EAAE,WAAW;YACjB,IAAI,EAAE,GAAG,MAAM,EAAE;YACjB,MAAM,EAAE,CAAC;SACV,CAAA;QACD,MAAM,GAAG,CAAC,CAAA;KACX;IAED,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;AAC/B,CAAC;AAED,MAAM,UAAU,mBAAmB,CACjC,YAA0B,EAC1B,cAAsB,EACtB,OAAe,EACf,SAA0C;IAE1C,IAAI,GAAG,GAAG,EAAE,CAAA;IACZ,IAAI,KAAK,GAAG,EAAE,CAAA;IACd,IAAI,EAAE,GAAG,GAAG,CAAA;IACZ,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,IAAI,CAAC,SAAS,EAAE;QACd,OAAO,EAAE,CAAA;KACV;IAED,yCAAyC;IACzC,MAAM,GAAG,GAAG,SAAS,CAAC,GAAG,CAAA;IACzB,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAA;IAChC,IAAI,OAAO,GAAG,cAAc,CAAA;IAC5B,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,IAAI,YAAY,KAAK,SAAS,EAAE;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC5C,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC,CAAA;YACnD,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;YACzB,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAC,CAAA;YACvD,OAAO,GAAG,MAAM,CAAA;YAEhB,IAAI,MAAM,GAAG,CAAC,IAAI,MAAM,EAAE;gBACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;gBACrB,MAAM,GAAG,CAAC,CAAA;aACX;YACD,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;gBACvB,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;gBACxB,KAAK,GAAG,CAAC,CAAA;aACV;YACD,IAAI,MAAM,EAAE;gBACV,EAAE,GAAG,GAAG,CAAA;gBACR,KAAK,IAAI,MAAM,CAAA;aAChB;YAED,IAAI,IAAI,KAAK,GAAG,EAAE;gBAChB,oCAAoC;gBACpC,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;gBAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,GAAG,CAAC,CAAA;gBACzC,GAAG,IAAI,KAAK,CAAA;gBACZ,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBACvB,KAAK,IAAI,KAAK,CAAC,MAAM,CAAA;aACtB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,6BAA6B;gBAC7B,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,eAAe;gBACf,GAAG,IAAI,GAAG,CAAA;gBACV,OAAO,EAAE,CAAA;gBACT,KAAK,EAAE,CAAA;aACR;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,uBAAuB;gBACvB,OAAO,IAAI,IAAI,CAAA;gBACf,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,IAAI,GAAG,IAAI,CAAA;gBACpB,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvC,yBAAyB;gBACzB,GAAG,IAAI,IAAI,CAAA;gBACX,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;gBAC3B,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,wBAAwB;gBACxB,cAAc;gBACd,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,MAAM,EAAE,CAAA;gBACR,GAAG,IAAI,IAAI,CAAA;gBACX,KAAK,GAAG,CAAC,CAAA;aACV;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,UAAU;gBACV,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;aACpB;iBAAM,IAAI,IAAI,KAAK,GAAG,EAAE;gBACvB,YAAY;gBACZ,IAAI,KAAK,EAAE;oBACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;iBACzB;gBACD,KAAK,IAAI,GAAG,IAAI,GAAG,CAAA;gBACnB,KAAK,GAAG,CAAC,CAAA;aACV,CAAC,cAAc;SACjB;KACF;SAAM;QACL,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;KAC9B;IACD,IAAI,GAAG,CAAC,MAAM,KAAK,OAAO,EAAE;QAC1B,MAAM,GAAG,OAAO,GAAG,GAAG,CAAC,MAAM,CAAA;QAC7B,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,EAAE,OAAO,GAAG,QAAQ,GAAG,MAAM,CAAC,CAAA;QAEjE,IAAI,KAAK,IAAI,EAAE,KAAK,GAAG,EAAE;YACvB,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;YACxB,KAAK,GAAG,CAAC,CAAA;SACV;QACD,EAAE,GAAG,GAAG,CAAA;QACR,KAAK,IAAI,MAAM,CAAA;KAChB;IACD,IAAI,MAAM,IAAI,MAAM,GAAG,CAAC,EAAE;QACxB,KAAK,IAAI,GAAG,MAAM,GAAG,CAAA;KACtB;IACD,IAAI,KAAK,EAAE;QACT,KAAK,IAAI,GAAG,KAAK,GAAG,EAAE,EAAE,CAAA;KACzB;IAED,OAAO,KAAK,CAAA;AACd,CAAC"}

package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js CHANGED Viewed

@@ -3,13 +3,13 @@ import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 import { getConf } from '@jbrowse/core/configuration';
 import { ResizeHandle } from '@jbrowse/core/ui';
-const useStyles = makeStyles()(() => ({
+const useStyles = makeStyles()({
     resizeHandle: {
         height: 2,
         position: 'absolute',
         zIndex: 2,
     },
-}));
+});
 function AlignmentsDisplay({ model }) {
     const { PileupDisplay, SNPCoverageDisplay } = model;
     const { classes } = useStyles();

package/esm/LinearAlignmentsDisplay/components/AlignmentsDisplay.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"AlignmentsDisplay.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAK/C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC~~,GAAG,EAAE,CAAC,CAAC~~;~~IACpC~~,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,~~CAAC,~~CAAA;~~AAEH~~,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAAqC;IACrE,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,GAAG,GAAG,kBAAkB,CAAC,MAAM,CAAA;IACrC,OAAO,CACL,4CACe,WAAW,OAAO,CAAC,KAAK,EAAE,WAAW,CAAC,EAAE,EACrD,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAE/B,4CAAiB,sBAAsB;YACrC,oBAAC,kBAAkB,CAAC,kBAAkB,IAAC,KAAK,EAAE,kBAAkB,GAAI,CAChE;QACN,oBAAC,YAAY,IACX,MAAM,EAAE,KAAK,CAAC,EAAE;gBACd,kBAAkB,CAAC,SAAS,CAAC,kBAAkB,CAAC,MAAM,GAAG,KAAK,CAAC,CAAA;gBAC/D,OAAO,KAAK,CAAA;YACd,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE,EAAE,GAAG,EAAE,GACd;QAEF,4CACc,iBAAiB,EAC7B,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG;aACJ;YAED,oBAAC,aAAa,CAAC,kBAAkB,IAAC,KAAK,EAAE,aAAa,GAAI,CACtD,CACF,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,iBAAiB,CAAC,CAAA"}
1	+ {"version":3,"file":"AlignmentsDisplay.js","sourceRoot":"","sources":["../../../src/LinearAlignmentsDisplay/components/AlignmentsDisplay.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAK/C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAEF,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAAqC;IACrE,MAAM,EAAE,aAAa,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACnD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,GAAG,GAAG,kBAAkB,CAAC,MAAM,CAAA;IACrC,OAAO,CACL,4CACe,WAAW,OAAO,CAAC,KAAK,EAAE,WAAW,CAAC,EAAE,EACrD,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAE/B,4CAAiB,sBAAsB;YACrC,oBAAC,kBAAkB,CAAC,kBAAkB,IAAC,KAAK,EAAE,kBAAkB,GAAI,CAChE;QACN,oBAAC,YAAY,IACX,MAAM,EAAE,KAAK,CAAC,EAAE;gBACd,kBAAkB,CAAC,SAAS,CAAC,kBAAkB,CAAC,MAAM,GAAG,KAAK,CAAC,CAAA;gBAC/D,OAAO,KAAK,CAAA;YACd,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE,EAAE,GAAG,EAAE,GACd;QAEF,4CACc,iBAAiB,EAC7B,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG;aACJ;YAED,oBAAC,aAAa,CAAC,kBAAkB,IAAC,KAAK,EAAE,aAAa,GAAI,CACtD,CACF,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,iBAAiB,CAAC,CAAA"}

package/esm/LinearAlignmentsDisplay/models/model.d.ts CHANGED Viewed

@@ -65,9 +65,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
-    trackMenuItems(): MenuItem[]; /**
-     * #action
-     */
+    trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): undefined;
 } & {