@jbrowse/plugin-alignments 1.7.10 → 2.0.1

package/dist/PileupRenderer/PileupRenderer.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
+import { Theme } from '@mui/material/styles';
 import BoxRendererType, { RenderArgs, RenderArgsSerialized, RenderArgsDeserialized as BoxRenderArgsDeserialized, RenderResults, ResultsSerialized, ResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType';
-import { Theme } from '@material-ui/core';
 import { Region, Feature } from '@jbrowse/core/util';
 import { BaseLayout } from '@jbrowse/core/util/layouts/BaseLayout';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
@@ -57,9 +57,9 @@ export default class PileupRenderer extends BoxRendererType {
     getExpandedRegion(region: Region, renderArgs: RenderArgsDeserialized): {
         start: number;
         end: number;
+        reversed?: boolean | undefined;
         refName: string;
         assemblyName: string;
-        reversed?: boolean | undefined;
     };
     colorByOrientation(feature: Feature, config: AnyConfigurationModel): string;
     getOrientation(feature: Feature, config: AnyConfigurationModel): string;
@@ -111,7 +111,7 @@ export default class PileupRenderer extends BoxRendererType {
         defaultColor: boolean;
         canvasWidth: number;
     }): void;
-    drawMismatches({ ctx, feat, renderArgs, minSubfeatureWidth, largeInsertionIndicatorScale, mismatchAlpha, charWidth, charHeight, colorForBase, contrastForBase, canvasWidth, drawSNPs, drawIndels, }: {
+    drawMismatches({ ctx, feat, renderArgs, minSubfeatureWidth, largeInsertionIndicatorScale, mismatchAlpha, charWidth, charHeight, colorForBase, contrastForBase, canvasWidth, drawSNPsMuted, drawIndels, }: {
         ctx: CanvasRenderingContext2D;
         feat: LayoutFeature;
         renderArgs: RenderArgsDeserializedWithFeaturesAndLayout;
@@ -122,8 +122,8 @@ export default class PileupRenderer extends BoxRendererType {
             [key: string]: string;
         };
         mismatchAlpha?: boolean;
-        drawSNPs?: boolean;
         drawIndels?: boolean;
+        drawSNPsMuted?: boolean;
         minSubfeatureWidth: number;
         largeInsertionIndicatorScale: number;
         charWidth: number;