@jbrowse/plugin-alignments 1.7.10 → 2.0.1

package/dist/LinearPileupDisplay/components/FilterByTag.js

@@ -1,203 +1,167 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _react = _interopRequireWildcard(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _core = require("@material-ui/core");
-
-var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-var useStyles = (0, _core.makeStyles)(function (theme) {
-  return {
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var mobx_react_1 = require("mobx-react");
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     paper: {
-      padding: theme.spacing(2),
-      margin: theme.spacing(2)
+        padding: theme.spacing(2),
+        margin: theme.spacing(2),
     },
     closeButton: {
-      position: 'absolute',
-      right: theme.spacing(1),
-      top: theme.spacing(1),
-      color: theme.palette.grey[500]
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
     },
     field: {
-      margin: theme.spacing(2)
-    }
-  };
-});
-var flagNames = ['read paired', 'read mapped in proper pair', 'read unmapped', 'mate unmapped', 'read reverse strand', 'mate reverse strand', 'first in pair', 'second in pair', 'not primary alignment', 'read fails platform/vendor quality checks', 'read is PCR or optical duplicate', 'supplementary alignment'];
-
+        margin: theme.spacing(2),
+    },
+}); });
+var flagNames = [
+    'read paired',
+    'read mapped in proper pair',
+    'read unmapped',
+    'mate unmapped',
+    'read reverse strand',
+    'mate reverse strand',
+    'first in pair',
+    'second in pair',
+    'not primary alignment',
+    'read fails platform/vendor quality checks',
+    'read is PCR or optical duplicate',
+    'supplementary alignment',
+];
 function Bitmask(props) {
-  var _props$flag = props.flag,
-      flag = _props$flag === void 0 ? 0 : _props$flag,
-      setFlag = props.setFlag;
-  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.TextField, {
-    type: "number",
-    value: flag,
-    onChange: function onChange(event) {
-      return setFlag(+event.target.value);
-    }
-  }), flagNames.map(function (name, index) {
-    var val = flag & 1 << index;
-    var key = "".concat(name, "_").concat(val);
-    return /*#__PURE__*/_react.default.createElement("div", {
-      key: key
-    }, /*#__PURE__*/_react.default.createElement("input", {
-      type: "checkbox",
-      checked: Boolean(val),
-      onChange: function onChange(event) {
-        if (event.target.checked) {
-          setFlag(flag | 1 << index);
-        } else {
-          setFlag(flag & ~(1 << index));
-        }
-      }
-    }), /*#__PURE__*/_react.default.createElement("label", {
-      htmlFor: key
-    }, name));
-  }));
+    var _a = props.flag, flag = _a === void 0 ? 0 : _a, setFlag = props.setFlag;
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.TextField, { type: "number", value: flag, onChange: function (event) { return setFlag(+event.target.value); } }),
+        flagNames.map(function (name, index) {
+            var val = flag & (1 << index);
+            var key = "".concat(name, "_").concat(val);
+            return (react_1.default.createElement("div", { key: key },
+                react_1.default.createElement("input", { type: "checkbox", checked: Boolean(val), onChange: function (event) {
+                        if (event.target.checked) {
+                            setFlag(flag | (1 << index));
+                        }
+                        else {
+                            setFlag(flag & ~(1 << index));
+                        }
+                    } }),
+                react_1.default.createElement("label", { htmlFor: key }, name)));
+        })));
 }
-
 function FilterByTagDlg(props) {
-  var _filterBy$tagFilter, _filterBy$tagFilter2;
-
-  var model = props.model,
-      handleClose = props.handleClose;
-  var classes = useStyles();
-  var filterBy = model.filterBy;
-
-  var _useState = (0, _react.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagInclude),
-      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      flagInclude = _useState2[0],
-      setFlagInclude = _useState2[1];
-
-  var _useState3 = (0, _react.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagExclude),
-      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
-      flagExclude = _useState4[0],
-      setFlagExclude = _useState4[1];
-
-  var _useState5 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : (_filterBy$tagFilter = filterBy.tagFilter) === null || _filterBy$tagFilter === void 0 ? void 0 : _filterBy$tagFilter.tag) || ''),
-      _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
-      tag = _useState6[0],
-      setTag = _useState6[1];
-
-  var _useState7 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : (_filterBy$tagFilter2 = filterBy.tagFilter) === null || _filterBy$tagFilter2 === void 0 ? void 0 : _filterBy$tagFilter2.value) || ''),
-      _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
-      tagValue = _useState8[0],
-      setTagValue = _useState8[1];
-
-  var _useState9 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : filterBy.readName) || ''),
-      _useState10 = (0, _slicedToArray2.default)(_useState9, 2),
-      readName = _useState10[0],
-      setReadName = _useState10[1];
-
-  var validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
-  var site = 'https://broadinstitute.github.io/picard/explain-flags.html';
-  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
-    open: true,
-    onClose: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Filter options", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
-    "aria-label": "close",
-    className: classes.closeButton,
-    onClick: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Set filter bitmask options. Refer to ", /*#__PURE__*/_react.default.createElement(_core.Link, {
-    href: site
-  }, site), ' ', "for details"), /*#__PURE__*/_react.default.createElement(_core.Paper, {
-    className: classes.paper,
-    variant: "outlined"
-  }, /*#__PURE__*/_react.default.createElement("div", {
-    style: {
-      display: 'flex'
-    }
-  }, /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Read must have ALL these flags"), /*#__PURE__*/_react.default.createElement(Bitmask, {
-    flag: flagInclude,
-    setFlag: setFlagInclude
-  })), /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Read must have NONE of these flags"), /*#__PURE__*/_react.default.createElement(Bitmask, {
-    flag: flagExclude,
-    setFlag: setFlagExclude
-  })))), /*#__PURE__*/_react.default.createElement(_core.Paper, {
-    className: classes.paper,
-    variant: "outlined"
-  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Filter by tag name and value. Use * in the value field to get all reads containing any value for that tag. Example: filter tag name SA with value * to get all split/supplementary reads. Other examples include HP for haplotype, or RG for read group"), /*#__PURE__*/_react.default.createElement(_core.TextField, {
-    className: classes.field,
-    value: tag,
-    onChange: function onChange(event) {
-      setTag(event.target.value);
-    },
-    placeholder: "Enter tag name",
-    inputProps: {
-      maxLength: 2,
-      'data-testid': 'color-tag-name-input'
-    },
-    error: tag.length === 2 && !validTag,
-    helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '',
-    "data-testid": "color-tag-name"
-  }), /*#__PURE__*/_react.default.createElement(_core.TextField, {
-    className: classes.field,
-    value: tagValue,
-    onChange: function onChange(event) {
-      setTagValue(event.target.value);
-    },
-    placeholder: "Enter tag value",
-    inputProps: {
-      'data-testid': 'color-tag-name-input'
-    },
-    "data-testid": "color-tag-value"
-  })), /*#__PURE__*/_react.default.createElement(_core.Paper, {
-    className: classes.paper,
-    variant: "outlined"
-  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Filter by read name"), /*#__PURE__*/_react.default.createElement(_core.TextField, {
-    className: classes.field,
-    value: readName,
-    onChange: function onChange(event) {
-      setReadName(event.target.value);
-    },
-    placeholder: "Enter read name",
-    inputProps: {
-      'data-testid': 'color-tag-readname-input'
-    },
-    "data-testid": "color-tag-readname"
-  })), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
-    variant: "contained",
-    color: "primary",
-    autoFocus: true,
-    type: "submit",
-    onClick: function onClick() {
-      model.setFilterBy({
-        flagInclude: flagInclude,
-        flagExclude: flagExclude,
-        readName: readName,
-        tagFilter: tag !== '' ? {
-          tag: tag,
-          value: tagValue
-        } : undefined
-      });
-      handleClose();
-    }
-  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
-    variant: "contained",
-    color: "secondary",
-    onClick: function onClick() {
-      return handleClose();
-    }
-  }, "Cancel"))));
+    var _a, _b;
+    var model = props.model, handleClose = props.handleClose;
+    var classes = useStyles().classes;
+    var filterBy = model.filterBy;
+    var _c = __read((0, react_1.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagInclude), 2), flagInclude = _c[0], setFlagInclude = _c[1];
+    var _d = __read((0, react_1.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagExclude), 2), flagExclude = _d[0], setFlagExclude = _d[1];
+    var _e = __read((0, react_1.useState)(((_a = filterBy === null || filterBy === void 0 ? void 0 : filterBy.tagFilter) === null || _a === void 0 ? void 0 : _a.tag) || ''), 2), tag = _e[0], setTag = _e[1];
+    var _f = __read((0, react_1.useState)(((_b = filterBy === null || filterBy === void 0 ? void 0 : filterBy.tagFilter) === null || _b === void 0 ? void 0 : _b.value) || ''), 2), tagValue = _f[0], setTagValue = _f[1];
+    var _g = __read((0, react_1.useState)((filterBy === null || filterBy === void 0 ? void 0 : filterBy.readName) || ''), 2), readName = _g[0], setReadName = _g[1];
+    var validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
+    var site = 'https://broadinstitute.github.io/picard/explain-flags.html';
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Filter options",
+            react_1.default.createElement(material_1.IconButton, { "aria-label": "close", className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null,
+                "Set filter bitmask options. Refer to ",
+                react_1.default.createElement(material_1.Link, { href: site }, site),
+                ' ',
+                "for details"),
+            react_1.default.createElement(material_1.Paper, { className: classes.paper, variant: "outlined" },
+                react_1.default.createElement("div", { style: { display: 'flex' } },
+                    react_1.default.createElement("div", null,
+                        react_1.default.createElement(material_1.Typography, null, "Read must have ALL these flags"),
+                        react_1.default.createElement(Bitmask, { flag: flagInclude, setFlag: setFlagInclude })),
+                    react_1.default.createElement("div", null,
+                        react_1.default.createElement(material_1.Typography, null, "Read must have NONE of these flags"),
+                        react_1.default.createElement(Bitmask, { flag: flagExclude, setFlag: setFlagExclude })))),
+            react_1.default.createElement(material_1.Paper, { className: classes.paper, variant: "outlined" },
+                react_1.default.createElement(material_1.Typography, null, "Filter by tag name and value. Use * in the value field to get all reads containing any value for that tag. Example: filter tag name SA with value * to get all split/supplementary reads. Other examples include HP for haplotype, or RG for read group"),
+                react_1.default.createElement(material_1.TextField, { className: classes.field, value: tag, onChange: function (event) {
+                        setTag(event.target.value);
+                    }, placeholder: "Enter tag name", inputProps: {
+                        maxLength: 2,
+                        'data-testid': 'color-tag-name-input',
+                    }, error: tag.length === 2 && !validTag, helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '', "data-testid": "color-tag-name" }),
+                react_1.default.createElement(material_1.TextField, { className: classes.field, value: tagValue, onChange: function (event) {
+                        setTagValue(event.target.value);
+                    }, placeholder: "Enter tag value", inputProps: {
+                        'data-testid': 'color-tag-name-input',
+                    }, "data-testid": "color-tag-value" })),
+            react_1.default.createElement(material_1.Paper, { className: classes.paper, variant: "outlined" },
+                react_1.default.createElement(material_1.Typography, null, "Filter by read name"),
+                react_1.default.createElement(material_1.TextField, { className: classes.field, value: readName, onChange: function (event) {
+                        setReadName(event.target.value);
+                    }, placeholder: "Enter read name", inputProps: {
+                        'data-testid': 'color-tag-readname-input',
+                    }, "data-testid": "color-tag-readname" })),
+            react_1.default.createElement(material_1.DialogActions, null,
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", autoFocus: true, type: "submit", onClick: function () {
+                        model.setFilterBy({
+                            flagInclude: flagInclude,
+                            flagExclude: flagExclude,
+                            readName: readName,
+                            tagFilter: tag !== ''
+                                ? {
+                                    tag: tag,
+                                    value: tagValue,
+                                }
+                                : undefined,
+                        });
+                        handleClose();
+                    } }, "Submit"),
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: function () { return handleClose(); } }, "Cancel")))));
 }
-
-var _default = (0, _mobxReact.observer)(FilterByTagDlg);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(FilterByTagDlg);
+//# sourceMappingURL=FilterByTag.js.map

package/dist/LinearPileupDisplay/components/FilterByTag.js.map

@@ -0,0 +1 @@
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package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -1,32 +1,18 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _Typography = _interopRequireDefault(require("@material-ui/core/Typography"));
-
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
+var Typography_1 = __importDefault(require("@mui/material/Typography"));
 function LinearPileupDisplayBlurb(props) {
-  var model = props.model;
-  var sortedBy = model.sortedBy;
-  return sortedBy ? /*#__PURE__*/_react.default.createElement("div", {
-    "data-testid": "blurb-".concat(model.sortedBy),
-    style: {
-      backgroundColor: 'white'
-    }
-  }, /*#__PURE__*/_react.default.createElement(_Typography.default, {
-    color: "secondary",
-    variant: "caption"
-  }, model.sortedBy ? "Sorted by ".concat(sortedBy.type.toLowerCase(), " at ").concat(sortedBy.refName, ":").concat(sortedBy.pos) : null)) : null;
+    var model = props.model;
+    var sortedBy = model.sortedBy;
+    return sortedBy ? (react_1.default.createElement("div", { "data-testid": "blurb-".concat(model.sortedBy), style: { backgroundColor: 'white' } },
+        react_1.default.createElement(Typography_1.default, { color: "secondary", variant: "caption" }, model.sortedBy
+            ? "Sorted by ".concat(sortedBy.type.toLowerCase(), " at ").concat(sortedBy.refName, ":").concat(sortedBy.pos)
+            : null))) : null;
 }
-
-var _default = (0, _mobxReact.observer)(LinearPileupDisplayBlurb);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(LinearPileupDisplayBlurb);
+//# sourceMappingURL=LinearPileupDisplayBlurb.js.map

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"LinearPileupDisplayBlurb.js","sourceRoot":"","sources":["../../../src/LinearPileupDisplay/components/LinearPileupDisplayBlurb.tsx"],"names":[],"mappings":";;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,wEAAiD;AAYjD,SAAS,wBAAwB,CAAC,KAAoC;IAC5D,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IACf,IAAA,QAAQ,GAAK,KAAK,SAAV,CAAU;IAC1B,OAAO,QAAQ,CAAC,CAAC,CAAC,CAChB,sDACe,gBAAS,KAAK,CAAC,QAAQ,CAAE,EACtC,KAAK,EAAE,EAAE,eAAe,EAAE,OAAO,EAAE;QAEnC,8BAAC,oBAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAC,SAAS,IAC5C,KAAK,CAAC,QAAQ;YACb,CAAC,CAAC,oBAAa,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE,iBAAO,QAAQ,CAAC,OAAO,cAC7D,QAAQ,CAAC,GAAG,CACZ;YACJ,CAAC,CAAC,IAAI,CACG,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC;AACD,kBAAe,IAAA,qBAAQ,EAAC,wBAAwB,CAAC,CAAA"}

package/dist/LinearPileupDisplay/components/SetFeatureHeight.js

@@ -1,99 +1,85 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _react = _interopRequireWildcard(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _core = require("@material-ui/core");
-
-var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-var useStyles = (0, _core.makeStyles)(function (theme) {
-  return {
-    closeButton: {
-      position: 'absolute',
-      right: theme.spacing(1),
-      top: theme.spacing(1),
-      color: theme.palette.grey[500]
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
     }
-  };
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-
-function SetFeatureHeightDlg(props) {
-  var classes = useStyles();
-  var model = props.model,
-      handleClose = props.handleClose;
-  var featureHeightSetting = model.featureHeightSetting,
-      noSpacingSetting = model.noSpacing;
-
-  var _useState = (0, _react.useState)("".concat(featureHeightSetting)),
-      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      height = _useState2[0],
-      setHeight = _useState2[1];
-
-  var _useState3 = (0, _react.useState)(noSpacingSetting),
-      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
-      noSpacing = _useState4[0],
-      setNoSpacing = _useState4[1];
-
-  var ok = height !== '' && !Number.isNaN(+height);
-  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
-    open: true,
-    onClose: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Set feature height", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
-    className: classes.closeButton,
-    onClick: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."), /*#__PURE__*/_react.default.createElement(_core.TextField, {
-    value: height,
-    helperText: "Feature height",
-    onChange: function onChange(event) {
-      setHeight(event.target.value);
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
     }
-  }), /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
-    control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
-      checked: !!noSpacing,
-      onChange: function onChange() {
-        return setNoSpacing(function (val) {
-          return !val;
-        });
-      }
-    }),
-    label: "Remove spacing between features in y-direction?"
-  }), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
-    variant: "contained",
-    color: "primary",
-    type: "submit",
-    autoFocus: true,
-    disabled: !ok,
-    onClick: function onClick() {
-      model.setFeatureHeight(height !== '' && !Number.isNaN(+height) ? +height : undefined);
-      model.setNoSpacing(noSpacing);
-      handleClose();
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
     }
-  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
-    variant: "contained",
-    color: "secondary",
-    onClick: function onClick() {
-      return handleClose();
-    }
-  }, "Cancel"))));
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var mobx_react_1 = require("mobx-react");
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
+    closeButton: {
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}); });
+function SetFeatureHeightDlg(props) {
+    var classes = useStyles().classes;
+    var model = props.model, handleClose = props.handleClose;
+    var featureHeightSetting = model.featureHeightSetting, noSpacingSetting = model.noSpacing;
+    var _a = __read((0, react_1.useState)("".concat(featureHeightSetting)), 2), height = _a[0], setHeight = _a[1];
+    var _b = __read((0, react_1.useState)(noSpacingSetting), 2), noSpacing = _b[0], setNoSpacing = _b[1];
+    var ok = height !== '' && !Number.isNaN(+height);
+    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Set feature height",
+            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: handleClose },
+                react_1.default.createElement(Close_1.default, null))),
+        react_1.default.createElement(material_1.DialogContent, null,
+            react_1.default.createElement(material_1.Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."),
+            react_1.default.createElement(material_1.TextField, { value: height, helperText: "Feature height", onChange: function (event) {
+                    setHeight(event.target.value);
+                } }),
+            react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: !!noSpacing, onChange: function () { return setNoSpacing(function (val) { return !val; }); } }), label: "Remove spacing between features in y-direction?" }),
+            react_1.default.createElement(material_1.DialogActions, null,
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: function () {
+                        model.setFeatureHeight(height !== '' && !Number.isNaN(+height) ? +height : undefined);
+                        model.setNoSpacing(noSpacing);
+                        handleClose();
+                    } }, "Submit"),
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: function () { return handleClose(); } }, "Cancel")))));
 }
-
-var _default = (0, _mobxReact.observer)(SetFeatureHeightDlg);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(SetFeatureHeightDlg);
+//# sourceMappingURL=SetFeatureHeight.js.map

package/dist/LinearPileupDisplay/components/SetFeatureHeight.js.map

@@ -0,0 +1 @@
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