@jbrowse/plugin-alignments 1.7.0 → 1.7.4

package/dist/LinearPileupDisplay/components/ColorByTag.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -21,7 +21,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
@@ -43,25 +43,25 @@ function ColorByTagDlg(props) {
       handleClose = props.handleClose;
 
   var _useState = (0, _react.useState)(''),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       tag = _useState2[0],
       setTag = _useState2[1];
 
   var validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
-  return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
+  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
     open: true,
     onClose: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Color by tag", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Color by tag", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     "aria-label": "close",
     className: classes.closeButton,
     onClick: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, {
     style: {
       overflowX: 'hidden'
     }
-  }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Enter tag to color by: "), /*#__PURE__*/_react["default"].createElement(_core.Typography, {
+  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Enter tag to color by: "), /*#__PURE__*/_react.default.createElement(_core.Typography, {
     color: "textSecondary"
-  }, "Examples: XS or TS for RNA-seq inferred read strand, ts (lower-case) for minimap2 read strand, HP for haplotype, RG for read group, etc."), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }, "Examples: XS or TS for RNA-seq inferred read strand, ts (lower-case) for minimap2 read strand, HP for haplotype, RG for read group, etc."), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     value: tag,
     onChange: function onChange(event) {
       return setTag(event.target.value);
@@ -75,7 +75,7 @@ function ColorByTagDlg(props) {
     helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '',
     autoComplete: "off",
     "data-testid": "color-tag-name"
-  }), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "primary",
     onClick: function onClick() {
@@ -86,7 +86,7 @@ function ColorByTagDlg(props) {
       handleClose();
     },
     disabled: !validTag
-  }, "Submit"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "secondary",
     onClick: handleClose
@@ -95,4 +95,4 @@ function ColorByTagDlg(props) {
 
 var _default = (0, _mobxReact.observer)(ColorByTagDlg);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearPileupDisplay/components/FilterByTag.d.ts

@@ -1,18 +1,18 @@
-/// <reference types="react" />
-declare function FilterByTagDlg(props: {
-    model: {
-        filterBy?: {
-            flagExclude: number;
-            flagInclude: number;
-            readName?: string;
-            tagFilter?: {
-                tag: string;
-                value: string;
-            };
-        };
-        setFilterBy: Function;
-    };
-    handleClose: () => void;
-}): JSX.Element;
-declare const _default: typeof FilterByTagDlg;
-export default _default;
+/// <reference types="react" />
+declare function FilterByTagDlg(props: {
+    model: {
+        filterBy?: {
+            flagExclude: number;
+            flagInclude: number;
+            readName?: string;
+            tagFilter?: {
+                tag: string;
+                value: string;
+            };
+        };
+        setFilterBy: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof FilterByTagDlg;
+export default _default;

package/dist/LinearPileupDisplay/components/FilterByTag.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -21,7 +21,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
@@ -46,7 +46,7 @@ function Bitmask(props) {
   var _props$flag = props.flag,
       flag = _props$flag === void 0 ? 0 : _props$flag,
       setFlag = props.setFlag;
-  return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.TextField, {
     type: "number",
     value: flag,
     onChange: function onChange(event) {
@@ -55,9 +55,9 @@ function Bitmask(props) {
   }), flagNames.map(function (name, index) {
     var val = flag & 1 << index;
     var key = "".concat(name, "_").concat(val);
-    return /*#__PURE__*/_react["default"].createElement("div", {
+    return /*#__PURE__*/_react.default.createElement("div", {
       key: key
-    }, /*#__PURE__*/_react["default"].createElement("input", {
+    }, /*#__PURE__*/_react.default.createElement("input", {
       type: "checkbox",
       checked: Boolean(val),
       onChange: function onChange(event) {
@@ -67,7 +67,7 @@ function Bitmask(props) {
           setFlag(flag & ~(1 << index));
         }
       }
-    }), /*#__PURE__*/_react["default"].createElement("label", {
+    }), /*#__PURE__*/_react.default.createElement("label", {
       htmlFor: key
     }, name));
   }));
@@ -82,58 +82,58 @@ function FilterByTagDlg(props) {
   var filterBy = model.filterBy;
 
   var _useState = (0, _react.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagInclude),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       flagInclude = _useState2[0],
       setFlagInclude = _useState2[1];
 
   var _useState3 = (0, _react.useState)(filterBy === null || filterBy === void 0 ? void 0 : filterBy.flagExclude),
-      _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
+      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
       flagExclude = _useState4[0],
       setFlagExclude = _useState4[1];
 
   var _useState5 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : (_filterBy$tagFilter = filterBy.tagFilter) === null || _filterBy$tagFilter === void 0 ? void 0 : _filterBy$tagFilter.tag) || ''),
-      _useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
+      _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
       tag = _useState6[0],
       setTag = _useState6[1];
 
   var _useState7 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : (_filterBy$tagFilter2 = filterBy.tagFilter) === null || _filterBy$tagFilter2 === void 0 ? void 0 : _filterBy$tagFilter2.value) || ''),
-      _useState8 = (0, _slicedToArray2["default"])(_useState7, 2),
+      _useState8 = (0, _slicedToArray2.default)(_useState7, 2),
       tagValue = _useState8[0],
       setTagValue = _useState8[1];
 
   var _useState9 = (0, _react.useState)((filterBy === null || filterBy === void 0 ? void 0 : filterBy.readName) || ''),
-      _useState10 = (0, _slicedToArray2["default"])(_useState9, 2),
+      _useState10 = (0, _slicedToArray2.default)(_useState9, 2),
       readName = _useState10[0],
       setReadName = _useState10[1];
 
   var validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
   var site = 'https://broadinstitute.github.io/picard/explain-flags.html';
-  return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
+  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
     open: true,
     onClose: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Filter options", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Filter options", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     "aria-label": "close",
     className: classes.closeButton,
     onClick: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Set filter bitmask options. Refer to ", /*#__PURE__*/_react["default"].createElement(_core.Link, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Set filter bitmask options. Refer to ", /*#__PURE__*/_react.default.createElement(_core.Link, {
     href: site
-  }, site), ' ', "for details"), /*#__PURE__*/_react["default"].createElement(_core.Paper, {
+  }, site), ' ', "for details"), /*#__PURE__*/_react.default.createElement(_core.Paper, {
     className: classes.paper,
     variant: "outlined"
-  }, /*#__PURE__*/_react["default"].createElement("div", {
+  }, /*#__PURE__*/_react.default.createElement("div", {
     style: {
       display: 'flex'
     }
-  }, /*#__PURE__*/_react["default"].createElement("div", null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Read must have ALL these flags"), /*#__PURE__*/_react["default"].createElement(Bitmask, {
+  }, /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Read must have ALL these flags"), /*#__PURE__*/_react.default.createElement(Bitmask, {
     flag: flagInclude,
     setFlag: setFlagInclude
-  })), /*#__PURE__*/_react["default"].createElement("div", null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Read must have NONE of these flags"), /*#__PURE__*/_react["default"].createElement(Bitmask, {
+  })), /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Read must have NONE of these flags"), /*#__PURE__*/_react.default.createElement(Bitmask, {
     flag: flagExclude,
     setFlag: setFlagExclude
-  })))), /*#__PURE__*/_react["default"].createElement(_core.Paper, {
+  })))), /*#__PURE__*/_react.default.createElement(_core.Paper, {
     className: classes.paper,
     variant: "outlined"
-  }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Filter by tag name and value. Use * in the value field to get all reads containing any value for that tag. Example: filter tag name SA with value * to get all split/supplementary reads. Other examples include HP for haplotype, or RG for read group"), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Filter by tag name and value. Use * in the value field to get all reads containing any value for that tag. Example: filter tag name SA with value * to get all split/supplementary reads. Other examples include HP for haplotype, or RG for read group"), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     className: classes.field,
     value: tag,
     onChange: function onChange(event) {
@@ -147,7 +147,7 @@ function FilterByTagDlg(props) {
     error: tag.length === 2 && !validTag,
     helperText: tag.length === 2 && !validTag ? 'Not a valid tag' : '',
     "data-testid": "color-tag-name"
-  }), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     className: classes.field,
     value: tagValue,
     onChange: function onChange(event) {
@@ -158,10 +158,10 @@ function FilterByTagDlg(props) {
       'data-testid': 'color-tag-name-input'
     },
     "data-testid": "color-tag-value"
-  })), /*#__PURE__*/_react["default"].createElement(_core.Paper, {
+  })), /*#__PURE__*/_react.default.createElement(_core.Paper, {
     className: classes.paper,
     variant: "outlined"
-  }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Filter by read name"), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Filter by read name"), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     className: classes.field,
     value: readName,
     onChange: function onChange(event) {
@@ -172,7 +172,7 @@ function FilterByTagDlg(props) {
       'data-testid': 'color-tag-readname-input'
     },
     "data-testid": "color-tag-readname"
-  })), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  })), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "primary",
     autoFocus: true,
@@ -189,7 +189,7 @@ function FilterByTagDlg(props) {
       });
       handleClose();
     }
-  }, "Submit"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "secondary",
     onClick: function onClick() {
@@ -200,4 +200,4 @@ function FilterByTagDlg(props) {
 
 var _default = (0, _mobxReact.observer)(FilterByTagDlg);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts

@@ -1,13 +1,13 @@
-/// <reference types="react" />
-export interface LinearPileupDisplayBlurbProps {
-    model: {
-        sortedBy?: {
-            pos: number;
-            refName: number;
-            type: string;
-        };
-    };
-}
-declare function LinearPileupDisplayBlurb(props: LinearPileupDisplayBlurbProps): JSX.Element | null;
-declare const _default: typeof LinearPileupDisplayBlurb;
-export default _default;
+/// <reference types="react" />
+export interface LinearPileupDisplayBlurbProps {
+    model: {
+        sortedBy?: {
+            pos: number;
+            refName: number;
+            type: string;
+        };
+    };
+}
+declare function LinearPileupDisplayBlurb(props: LinearPileupDisplayBlurbProps): JSX.Element | null;
+declare const _default: typeof LinearPileupDisplayBlurb;
+export default _default;

package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _react = _interopRequireDefault(require("react"));
 
@@ -16,12 +16,12 @@ var _Typography = _interopRequireDefault(require("@material-ui/core/Typography")
 function LinearPileupDisplayBlurb(props) {
   var model = props.model;
   var sortedBy = model.sortedBy;
-  return sortedBy ? /*#__PURE__*/_react["default"].createElement("div", {
+  return sortedBy ? /*#__PURE__*/_react.default.createElement("div", {
     "data-testid": "blurb-".concat(model.sortedBy),
     style: {
       backgroundColor: 'white'
     }
-  }, /*#__PURE__*/_react["default"].createElement(_Typography["default"], {
+  }, /*#__PURE__*/_react.default.createElement(_Typography.default, {
     color: "secondary",
     variant: "caption"
   }, model.sortedBy ? "Sorted by ".concat(sortedBy.type.toLowerCase(), " at ").concat(sortedBy.refName, ":").concat(sortedBy.pos) : null)) : null;
@@ -29,4 +29,4 @@ function LinearPileupDisplayBlurb(props) {
 
 var _default = (0, _mobxReact.observer)(LinearPileupDisplayBlurb);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearPileupDisplay/components/SetFeatureHeight.d.ts

@@ -1,16 +1,16 @@
-/// <reference types="react" />
-declare function SetFeatureHeightDlg(props: {
-    model: {
-        minScore: number;
-        maxScore: number;
-        setMinScore: Function;
-        setMaxScore: Function;
-        setFeatureHeight: Function;
-        setNoSpacing: Function;
-        featureHeightSetting: number;
-        noSpacing: boolean;
-    };
-    handleClose: () => void;
-}): JSX.Element;
-declare const _default: typeof SetFeatureHeightDlg;
-export default _default;
+/// <reference types="react" />
+declare function SetFeatureHeightDlg(props: {
+    model: {
+        minScore: number;
+        maxScore: number;
+        setMinScore: Function;
+        setMaxScore: Function;
+        setFeatureHeight: Function;
+        setNoSpacing: Function;
+        featureHeightSetting: number;
+        noSpacing: boolean;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SetFeatureHeightDlg;
+export default _default;

package/dist/LinearPileupDisplay/components/SetFeatureHeight.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -21,7 +21,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
@@ -42,30 +42,30 @@ function SetFeatureHeightDlg(props) {
       noSpacingSetting = model.noSpacing;
 
   var _useState = (0, _react.useState)("".concat(featureHeightSetting)),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       height = _useState2[0],
       setHeight = _useState2[1];
 
   var _useState3 = (0, _react.useState)(noSpacingSetting),
-      _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
+      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
       noSpacing = _useState4[0],
       setNoSpacing = _useState4[1];
 
   var ok = height !== '' && !Number.isNaN(+height);
-  return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
+  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
     open: true,
     onClose: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Set feature height", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Set feature height", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     className: classes.closeButton,
     onClick: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, null, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Adjust the feature height and whether there is any spacing between features. Setting feature height to 1 and removing spacing makes the display very compact."), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     value: height,
     helperText: "Feature height",
     onChange: function onChange(event) {
       setHeight(event.target.value);
     }
-  }), /*#__PURE__*/_react["default"].createElement(_core.FormControlLabel, {
-    control: /*#__PURE__*/_react["default"].createElement(_core.Checkbox, {
+  }), /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
+    control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
       checked: !!noSpacing,
       onChange: function onChange() {
         return setNoSpacing(function (val) {
@@ -74,7 +74,7 @@ function SetFeatureHeightDlg(props) {
       }
     }),
     label: "Remove spacing between features in y-direction?"
-  }), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "primary",
     type: "submit",
@@ -85,7 +85,7 @@ function SetFeatureHeightDlg(props) {
       model.setNoSpacing(noSpacing);
       handleClose();
     }
-  }, "Submit"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "secondary",
     onClick: function onClick() {
@@ -96,4 +96,4 @@ function SetFeatureHeightDlg(props) {
 
 var _default = (0, _mobxReact.observer)(SetFeatureHeightDlg);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearPileupDisplay/components/SetMaxHeight.d.ts

@@ -1,10 +1,10 @@
-/// <reference types="react" />
-declare function SetMaxHeightDlg(props: {
-    model: {
-        maxHeight?: number;
-        setMaxHeight: Function;
-    };
-    handleClose: () => void;
-}): JSX.Element;
-declare const _default: typeof SetMaxHeightDlg;
-export default _default;
+/// <reference types="react" />
+declare function SetMaxHeightDlg(props: {
+    model: {
+        maxHeight?: number;
+        setMaxHeight: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SetMaxHeightDlg;
+export default _default;

package/dist/LinearPileupDisplay/components/SetMaxHeight.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
@@ -21,7 +21,7 @@ var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
@@ -48,26 +48,26 @@ function SetMaxHeightDlg(props) {
       maxHeight = _model$maxHeight === void 0 ? '' : _model$maxHeight;
 
   var _useState = (0, _react.useState)("".concat(maxHeight)),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       max = _useState2[0],
       setMax = _useState2[1];
 
-  return /*#__PURE__*/_react["default"].createElement(_core.Dialog, {
+  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
     open: true,
     onClose: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_core.DialogTitle, null, "Filter options", /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Filter options", /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     "aria-label": "close",
     className: classes.closeButton,
     onClick: handleClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))), /*#__PURE__*/_react["default"].createElement(_core.DialogContent, {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, null))), /*#__PURE__*/_react.default.createElement(_core.DialogContent, {
     className: classes.root
-  }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""), /*#__PURE__*/_react["default"].createElement(_core.TextField, {
+  }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""), /*#__PURE__*/_react.default.createElement(_core.TextField, {
     value: max,
     onChange: function onChange(event) {
       setMax(event.target.value);
     },
     placeholder: "Enter max height for layout"
-  }), /*#__PURE__*/_react["default"].createElement(_core.DialogActions, null, /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "primary",
     type: "submit",
@@ -76,7 +76,7 @@ function SetMaxHeightDlg(props) {
       model.setMaxHeight(max !== '' && !Number.isNaN(+max) ? +max : undefined);
       handleClose();
     }
-  }, "Submit"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
+  }, "Submit"), /*#__PURE__*/_react.default.createElement(_core.Button, {
     variant: "contained",
     color: "secondary",
     onClick: function onClick() {
@@ -87,4 +87,4 @@ function SetMaxHeightDlg(props) {
 
 var _default = (0, _mobxReact.observer)(SetMaxHeightDlg);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/LinearPileupDisplay/components/SortByTag.d.ts

@@ -1,9 +1,9 @@
-/// <reference types="react" />
-declare function SortByTagDlg(props: {
-    model: {
-        setSortedBy: Function;
-    };
-    handleClose: () => void;
-}): JSX.Element;
-declare const _default: typeof SortByTagDlg;
-export default _default;
+/// <reference types="react" />
+declare function SortByTagDlg(props: {
+    model: {
+        setSortedBy: Function;
+    };
+    handleClose: () => void;
+}): JSX.Element;
+declare const _default: typeof SortByTagDlg;
+export default _default;