@jbrowse/plugin-alignments 1.7.0 → 1.7.4

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Files changed (122) hide show
  1. package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.d.ts +6 -6
  2. package/dist/AlignmentsFeatureDetail/AlignmentsFeatureDetail.js +26 -26
  3. package/dist/AlignmentsFeatureDetail/index.d.ts +13 -13
  4. package/dist/AlignmentsFeatureDetail/index.js +3 -3
  5. package/dist/AlignmentsFeatureDetail/index.test.js +2 -2
  6. package/dist/AlignmentsTrack/index.d.ts +2 -2
  7. package/dist/AlignmentsTrack/index.js +2 -2
  8. package/dist/BamAdapter/BamAdapter.d.ts +40 -30
  9. package/dist/BamAdapter/BamAdapter.js +31 -31
  10. package/dist/BamAdapter/BamAdapter.test.js +10 -10
  11. package/dist/BamAdapter/BamSlightlyLazyFeature.d.ts +33 -33
  12. package/dist/BamAdapter/BamSlightlyLazyFeature.js +6 -6
  13. package/dist/BamAdapter/MismatchParser.d.ts +28 -28
  14. package/dist/BamAdapter/MismatchParser.js +6 -6
  15. package/dist/BamAdapter/MismatchParser.test.js +2 -2
  16. package/dist/BamAdapter/configSchema.d.ts +2 -2
  17. package/dist/BamAdapter/configSchema.js +2 -2
  18. package/dist/BamAdapter/index.d.ts +3 -3
  19. package/dist/BamAdapter/index.js +6 -6
  20. package/dist/CramAdapter/CramAdapter.d.ts +52 -43
  21. package/dist/CramAdapter/CramAdapter.js +31 -31
  22. package/dist/CramAdapter/CramAdapter.test.js +10 -10
  23. package/dist/CramAdapter/CramSlightlyLazyFeature.d.ts +49 -49
  24. package/dist/CramAdapter/CramSlightlyLazyFeature.js +6 -6
  25. package/dist/CramAdapter/CramTestAdapters.d.ts +29 -29
  26. package/dist/CramAdapter/CramTestAdapters.js +18 -18
  27. package/dist/CramAdapter/configSchema.d.ts +3 -3
  28. package/dist/CramAdapter/configSchema.js +2 -2
  29. package/dist/CramAdapter/index.d.ts +3 -3
  30. package/dist/CramAdapter/index.js +6 -6
  31. package/dist/HtsgetBamAdapter/HtsgetBamAdapter.d.ts +9 -9
  32. package/dist/HtsgetBamAdapter/HtsgetBamAdapter.js +9 -9
  33. package/dist/HtsgetBamAdapter/configSchema.d.ts +2 -2
  34. package/dist/HtsgetBamAdapter/configSchema.js +2 -2
  35. package/dist/HtsgetBamAdapter/index.d.ts +3 -3
  36. package/dist/HtsgetBamAdapter/index.js +6 -6
  37. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.d.ts +7 -7
  38. package/dist/LinearAlignmentsDisplay/components/AlignmentsDisplay.js +8 -8
  39. package/dist/LinearAlignmentsDisplay/index.d.ts +2 -2
  40. package/dist/LinearAlignmentsDisplay/index.js +5 -5
  41. package/dist/LinearAlignmentsDisplay/models/configSchema.d.ts +4 -4
  42. package/dist/LinearAlignmentsDisplay/models/configSchema.js +2 -2
  43. package/dist/LinearAlignmentsDisplay/models/configSchema.test.js +11 -11
  44. package/dist/LinearAlignmentsDisplay/models/model.d.ts +105 -105
  45. package/dist/LinearAlignmentsDisplay/models/model.js +15 -15
  46. package/dist/LinearPileupDisplay/components/ColorByModifications.d.ts +14 -14
  47. package/dist/LinearPileupDisplay/components/ColorByModifications.js +18 -18
  48. package/dist/LinearPileupDisplay/components/ColorByTag.d.ts +9 -9
  49. package/dist/LinearPileupDisplay/components/ColorByTag.js +11 -11
  50. package/dist/LinearPileupDisplay/components/FilterByTag.d.ts +18 -18
  51. package/dist/LinearPileupDisplay/components/FilterByTag.js +26 -26
  52. package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.d.ts +13 -13
  53. package/dist/LinearPileupDisplay/components/LinearPileupDisplayBlurb.js +4 -4
  54. package/dist/LinearPileupDisplay/components/SetFeatureHeight.d.ts +16 -16
  55. package/dist/LinearPileupDisplay/components/SetFeatureHeight.js +12 -12
  56. package/dist/LinearPileupDisplay/components/SetMaxHeight.d.ts +10 -10
  57. package/dist/LinearPileupDisplay/components/SetMaxHeight.js +10 -10
  58. package/dist/LinearPileupDisplay/components/SortByTag.d.ts +9 -9
  59. package/dist/LinearPileupDisplay/components/SortByTag.js +10 -10
  60. package/dist/LinearPileupDisplay/configSchema.d.ts +6 -6
  61. package/dist/LinearPileupDisplay/configSchema.js +2 -2
  62. package/dist/LinearPileupDisplay/configSchema.test.js +12 -12
  63. package/dist/LinearPileupDisplay/index.d.ts +2 -2
  64. package/dist/LinearPileupDisplay/index.js +4 -4
  65. package/dist/LinearPileupDisplay/model.d.ts +319 -321
  66. package/dist/LinearPileupDisplay/model.js +22 -22
  67. package/dist/LinearSNPCoverageDisplay/components/Tooltip.d.ts +10 -10
  68. package/dist/LinearSNPCoverageDisplay/components/Tooltip.js +10 -10
  69. package/dist/LinearSNPCoverageDisplay/index.d.ts +2 -2
  70. package/dist/LinearSNPCoverageDisplay/index.js +4 -4
  71. package/dist/LinearSNPCoverageDisplay/models/configSchema.d.ts +2 -2
  72. package/dist/LinearSNPCoverageDisplay/models/configSchema.js +1 -1
  73. package/dist/LinearSNPCoverageDisplay/models/configSchema.test.js +7 -7
  74. package/dist/LinearSNPCoverageDisplay/models/model.d.ts +346 -96
  75. package/dist/LinearSNPCoverageDisplay/models/model.js +11 -11
  76. package/dist/NestedFrequencyTable.d.ts +14 -14
  77. package/dist/NestedFrequencyTable.js +7 -7
  78. package/dist/PileupRPC/rpcMethods.d.ts +34 -34
  79. package/dist/PileupRPC/rpcMethods.js +23 -23
  80. package/dist/PileupRenderer/PileupLayoutSession.d.ts +29 -29
  81. package/dist/PileupRenderer/PileupLayoutSession.js +8 -8
  82. package/dist/PileupRenderer/PileupRenderer.d.ts +125 -125
  83. package/dist/PileupRenderer/PileupRenderer.js +37 -37
  84. package/dist/PileupRenderer/components/PileupRendering.d.ts +23 -23
  85. package/dist/PileupRenderer/components/PileupRendering.js +13 -13
  86. package/dist/PileupRenderer/components/PileupRendering.test.js +2 -2
  87. package/dist/PileupRenderer/configSchema.d.ts +2 -2
  88. package/dist/PileupRenderer/configSchema.js +2 -2
  89. package/dist/PileupRenderer/index.d.ts +2 -2
  90. package/dist/PileupRenderer/index.js +4 -4
  91. package/dist/PileupRenderer/sortUtil.d.ts +8 -8
  92. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.d.ts +67 -71
  93. package/dist/SNPCoverageAdapter/SNPCoverageAdapter.js +22 -22
  94. package/dist/SNPCoverageAdapter/configSchema.d.ts +3 -3
  95. package/dist/SNPCoverageAdapter/configSchema.js +2 -2
  96. package/dist/SNPCoverageAdapter/index.d.ts +3 -3
  97. package/dist/SNPCoverageAdapter/index.js +6 -6
  98. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.d.ts +20 -20
  99. package/dist/SNPCoverageRenderer/SNPCoverageRenderer.js +12 -12
  100. package/dist/SNPCoverageRenderer/configSchema.d.ts +2 -2
  101. package/dist/SNPCoverageRenderer/configSchema.js +2 -2
  102. package/dist/SNPCoverageRenderer/index.d.ts +3 -3
  103. package/dist/SNPCoverageRenderer/index.js +3 -3
  104. package/dist/index.d.ts +10 -10
  105. package/dist/index.js +10 -10
  106. package/dist/index.test.js +2 -2
  107. package/dist/shared.d.ts +25 -25
  108. package/dist/shared.js +5 -5
  109. package/dist/util.d.ts +19 -19
  110. package/dist/util.js +3 -3
  111. package/package.json +5 -5
  112. package/dist/AlignmentsFeatureDetail/index.test.d.ts +0 -1
  113. package/dist/LinearAlignmentsDisplay/models/configSchema.test.d.ts +0 -1
  114. package/dist/LinearPileupDisplay/configSchema.test.d.ts +0 -1
  115. package/dist/LinearSNPCoverageDisplay/models/configSchema.test.d.ts +0 -1
  116. package/dist/PileupRenderer/components/PileupRendering.test.d.ts +0 -1
  117. package/dist/plugin-alignments.cjs.development.js +0 -8438
  118. package/dist/plugin-alignments.cjs.development.js.map +0 -1
  119. package/dist/plugin-alignments.cjs.production.min.js +0 -2
  120. package/dist/plugin-alignments.cjs.production.min.js.map +0 -1
  121. package/dist/plugin-alignments.esm.js +0 -8430
  122. package/dist/plugin-alignments.esm.js.map +0 -1

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