@jbrowse/core 5.0.0-beta.13 → 5.0.0-beta.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +365 -69
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +5 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +6 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +2 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ParentFeatureLine.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +4 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +4 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +3 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +4 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +1 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +10 -19
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +3 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +4 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +4 -4
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +3 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +1 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +2 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +1 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +15 -36
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +3 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +4 -2
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +2 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +22 -6
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +13 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +28 -1
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +2 -2
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +2 -0
- package/esm/PluginManager.d.ts +1 -0
- package/esm/PluginManager.js +6 -0
- package/esm/ReExports/coreModules.generated.js +538 -524
- package/esm/ReExports/coreWorkerModules.generated.js +454 -441
- package/esm/ReExports/lazify.js +3 -2
- package/esm/ReExports/list.js +15 -6
- package/esm/ReExports/names.d.ts +1 -0
- package/esm/ReExports/names.generated.d.ts +2 -0
- package/esm/ReExports/names.generated.js +566 -0
- package/esm/ReExports/names.js +3 -0
- package/esm/assemblyManager/assembly.d.ts +9 -0
- package/esm/assemblyManager/assembly.js +13 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +6 -1
- package/esm/assemblyManager/assemblyConfigSchema.js +23 -22
- package/esm/assemblyManager/assemblyManager.d.ts +11 -0
- package/esm/assemblyManager/assemblyManager.js +2 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +9 -0
- package/esm/assemblyManager/expandAssemblyConfigShorthand.js +23 -0
- package/esm/checkPlugins.js +10 -4
- package/esm/configuration/configurationSchema.d.ts +18 -5
- package/esm/configuration/configurationSchema.js +9 -7
- package/esm/configuration/configurationSchemaUnion.d.ts +2 -1
- package/esm/configuration/configurationSchemaUnion.js +2 -1
- package/esm/configuration/configurationSlot.js +4 -4
- package/esm/configuration/fillLocations.d.ts +4 -2
- package/esm/configuration/fillLocations.js +9 -3
- package/esm/configuration/formatAboutConfigSchema.d.ts +2 -2
- package/esm/configuration/formatAboutConfigSchema.js +2 -2
- package/esm/configuration/formatDetailsConfigSchema.d.ts +2 -2
- package/esm/configuration/formatDetailsConfigSchema.js +5 -5
- package/esm/configuration/getConf.js +13 -4
- package/esm/configuration/index.d.ts +1 -1
- package/esm/configuration/index.js +1 -1
- package/esm/configuration/plot.d.ts +2 -2
- package/esm/configuration/plot.js +32 -18
- package/esm/configuration/schemaRegistry.d.ts +0 -2
- package/esm/configuration/slotFacade.js +2 -2
- package/esm/configuration/snapshotPreprocess.d.ts +42 -18
- package/esm/configuration/snapshotPreprocess.js +94 -34
- package/esm/configuration/tabixShorthand.js +1 -3
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +7 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +7 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +0 -22
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +0 -55
- package/esm/data_adapters/BaseAdapter/index.d.ts +0 -1
- package/esm/data_adapters/BaseAdapter/index.js +0 -1
- package/esm/data_adapters/BaseAdapter/rowSources.d.ts +2 -2
- package/esm/data_adapters/BaseAdapter/types.d.ts +1 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +2 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.js +5 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +25 -13
- package/esm/data_adapters/dataAdapterCache.js +68 -24
- package/esm/data_adapters/getFeatureAdapter.d.ts +9 -0
- package/esm/data_adapters/getFeatureAdapter.js +17 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +2 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +2 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +40 -6
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +56 -8
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +3 -3
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +7 -6
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +2 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.js +2 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +3 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +3 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +3 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +3 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +3 -1
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +3 -1
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +9 -1
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +1 -1
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +1 -1
- package/esm/pluginDefinitions.d.ts +7 -0
- package/esm/pluginDefinitions.js +20 -0
- package/esm/rpc/RpcRegistry.d.ts +0 -10
- package/esm/rpc/byteBudget.d.ts +8 -0
- package/esm/rpc/byteBudget.js +13 -0
- package/esm/rpc/configSchema.d.ts +2 -0
- package/esm/rpc/configSchema.js +3 -1
- package/esm/rpc/coreRpcMethods.d.ts +0 -1
- package/esm/rpc/coreRpcMethods.js +0 -1
- package/esm/rpc/methods/CoreGetEncodedLayers.d.ts +2 -2
- package/esm/rpc/methods/CoreGetEncodedLayers.js +7 -5
- package/esm/rpc/methods/layerFeatures.d.ts +9 -6
- package/esm/rpc/methods/layerFeatures.js +21 -5
- package/esm/ui/ActionLink.d.ts +3 -2
- package/esm/ui/ActionLink.js +4 -2
- package/esm/ui/AddCustomPluginDialog.d.ts +3 -2
- package/esm/ui/AddCustomPluginDialog.js +6 -4
- package/esm/ui/BaseTooltip.d.ts +3 -2
- package/esm/ui/BaseTooltip.js +4 -2
- package/esm/ui/CascadingMenu.js +14 -12
- package/esm/ui/CascadingMenuButton.d.ts +2 -2
- package/esm/ui/CascadingMenuButton.js +5 -4
- package/esm/ui/CascadingMenuHelpDialog.d.ts +3 -2
- package/esm/ui/CascadingMenuHelpDialog.js +4 -2
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +4 -3
- package/esm/ui/CascadingMenuHelpIconButton.js +9 -5
- package/esm/ui/ColorPicker.d.ts +5 -4
- package/esm/ui/ColorPicker.js +6 -4
- package/esm/ui/ContextMenu.d.ts +1 -1
- package/esm/ui/ContextMenu.js +1 -1
- package/esm/ui/CopyToClipboardButton.d.ts +3 -2
- package/esm/ui/CopyToClipboardButton.js +4 -2
- package/esm/ui/Crosshairs.js +13 -10
- package/esm/ui/DOMPurifySanitizedHTML.d.ts +3 -2
- package/esm/ui/DOMPurifySanitizedHTML.js +4 -2
- package/esm/ui/DataGridFlexContainer.d.ts +3 -2
- package/esm/ui/DataGridFlexContainer.js +4 -2
- package/esm/ui/Dialog.d.ts +1 -1
- package/esm/ui/Dialog.js +5 -4
- package/esm/ui/DropDownMenu.js +2 -2
- package/esm/ui/EditableTypography.d.ts +1 -1
- package/esm/ui/EditableTypography.js +3 -2
- package/esm/ui/ErrorActions.d.ts +3 -2
- package/esm/ui/ErrorActions.js +4 -2
- package/esm/ui/ErrorBanner.d.ts +2 -2
- package/esm/ui/ErrorBanner.js +3 -2
- package/esm/ui/ErrorBar.d.ts +3 -2
- package/esm/ui/ErrorBar.js +4 -2
- package/esm/ui/ErrorMessage.d.ts +3 -2
- package/esm/ui/ErrorMessage.js +4 -2
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +3 -2
- package/esm/ui/ErrorMessageStackTraceContents.js +4 -2
- package/esm/ui/ErrorMessageStackTraceDialog.d.ts +3 -2
- package/esm/ui/ErrorMessageStackTraceDialog.js +4 -2
- package/esm/ui/ErrorOverlay.d.ts +3 -2
- package/esm/ui/ErrorOverlay.js +4 -2
- package/esm/ui/ExportSvgDialog.d.ts +3 -2
- package/esm/ui/ExportSvgDialog.js +4 -2
- package/esm/ui/ExternalLink.d.ts +2 -1
- package/esm/ui/ExternalLink.js +4 -2
- package/esm/ui/FactoryResetDialog.d.ts +3 -2
- package/esm/ui/FactoryResetDialog.js +4 -2
- package/esm/ui/FatalErrorDialog.d.ts +3 -2
- package/esm/ui/FatalErrorDialog.js +6 -4
- package/esm/ui/FileDropZone.d.ts +3 -2
- package/esm/ui/FileDropZone.js +4 -2
- package/esm/ui/FileSelector/LocalFileChooser.js +4 -4
- package/esm/ui/FileSelector/LocationInput.d.ts +3 -2
- package/esm/ui/FileSelector/LocationInput.js +4 -2
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +3 -2
- package/esm/ui/FileSelector/SourceTypeSelector.js +8 -6
- package/esm/ui/GpuFallbackButton.d.ts +3 -2
- package/esm/ui/GpuFallbackButton.js +4 -2
- package/esm/ui/HoverMenu.d.ts +2 -2
- package/esm/ui/HoverMenu.js +7 -3
- package/esm/ui/HoverTooltip.d.ts +3 -2
- package/esm/ui/HoverTooltip.js +4 -2
- package/esm/ui/Icons.d.ts +5 -5
- package/esm/ui/Icons.js +11 -10
- package/esm/ui/InlineMenuControls.d.ts +2 -2
- package/esm/ui/InlineMenuControls.js +4 -3
- package/esm/ui/JexlFilterRowEditors.d.ts +4 -4
- package/esm/ui/JexlFilterRowEditors.js +9 -8
- package/esm/ui/LabeledCheckbox.d.ts +3 -2
- package/esm/ui/LabeledCheckbox.js +4 -2
- package/esm/ui/LazyBaseTooltip.d.ts +12 -3
- package/esm/ui/LazyBaseTooltip.js +4 -2
- package/esm/ui/LegendSwatchGlyph.js +1 -0
- package/esm/ui/LoadingDots.d.ts +2 -1
- package/esm/ui/LoadingDots.js +4 -2
- package/esm/ui/LoadingEllipses.d.ts +5 -2
- package/esm/ui/LoadingEllipses.js +5 -3
- package/esm/ui/LoadingOverlay.d.ts +3 -2
- package/esm/ui/LoadingOverlay.js +4 -2
- package/esm/ui/LoadingProgress.d.ts +3 -2
- package/esm/ui/LoadingProgress.js +4 -2
- package/esm/ui/Logo.d.ts +2 -2
- package/esm/ui/Logo.js +9 -8
- package/esm/ui/MenuItemChevron.d.ts +2 -2
- package/esm/ui/MenuItemChevron.js +3 -2
- package/esm/ui/MenuItemEndDecoration.d.ts +2 -2
- package/esm/ui/MenuItemEndDecoration.js +3 -2
- package/esm/ui/MenuItemTrailing.d.ts +2 -2
- package/esm/ui/MenuItemTrailing.js +7 -6
- package/esm/ui/MenuTypes.d.ts +21 -1
- package/esm/ui/MenuTypes.js +20 -0
- package/esm/ui/MonospaceTextField.d.ts +3 -2
- package/esm/ui/MonospaceTextField.js +4 -2
- package/esm/ui/NumberTextField.d.ts +2 -2
- package/esm/ui/NumberTextField.js +4 -2
- package/esm/ui/PaletteContext.d.ts +11 -9
- package/esm/ui/PaletteContext.js +33 -18
- package/esm/ui/PluginStoreCard.d.ts +3 -2
- package/esm/ui/PluginStoreCard.js +4 -2
- package/esm/ui/PopoverPicker.d.ts +3 -2
- package/esm/ui/PopoverPicker.js +4 -2
- package/esm/ui/PrerenderedCanvas.d.ts +2 -2
- package/esm/ui/PrerenderedCanvas.js +3 -2
- package/esm/ui/RedErrorMessageBox.d.ts +3 -2
- package/esm/ui/RedErrorMessageBox.js +4 -2
- package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +3 -2
- package/esm/ui/RefNameAutocomplete/EndAdornment.js +4 -2
- package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -2
- package/esm/ui/RefNameAutocomplete/HelpDialog.js +4 -2
- package/esm/ui/ReplaceCurrentViewButton.d.ts +3 -2
- package/esm/ui/ReplaceCurrentViewButton.js +4 -2
- package/esm/ui/ResizeHandle.d.ts +2 -2
- package/esm/ui/ResizeHandle.js +3 -2
- package/esm/ui/SanitizedHTML.d.ts +3 -2
- package/esm/ui/SanitizedHTML.js +6 -4
- package/esm/ui/ScrollChrome.d.ts +3 -2
- package/esm/ui/ScrollChrome.js +4 -2
- package/esm/ui/ScrollEdgeShadow.d.ts +2 -2
- package/esm/ui/ScrollEdgeShadow.js +2 -2
- package/esm/ui/SessionJsonPanel.d.ts +3 -2
- package/esm/ui/SessionJsonPanel.js +4 -2
- package/esm/ui/ShareLinkField.d.ts +3 -2
- package/esm/ui/ShareLinkField.js +4 -2
- package/esm/ui/SingleSlider.d.ts +2 -2
- package/esm/ui/SingleSlider.js +4 -2
- package/esm/ui/SliderTooltip.d.ts +2 -1
- package/esm/ui/SliderTooltip.js +4 -2
- package/esm/ui/SnackbarContents.d.ts +3 -2
- package/esm/ui/SnackbarContents.js +4 -2
- package/esm/ui/SnackbarModel.d.ts +2 -0
- package/esm/ui/SnackbarModel.js +2 -0
- package/esm/ui/StackTraceButton.d.ts +3 -2
- package/esm/ui/StackTraceButton.js +4 -2
- package/esm/ui/StatusProgressBar.d.ts +3 -2
- package/esm/ui/StatusProgressBar.js +4 -2
- package/esm/ui/SubmitForm.d.ts +2 -1
- package/esm/ui/SubmitForm.js +4 -2
- package/esm/ui/SvgColorLegend.d.ts +3 -4
- package/esm/ui/SvgColorLegend.js +27 -18
- package/esm/ui/TagTextField.d.ts +2 -2
- package/esm/ui/TagTextField.js +4 -2
- package/esm/ui/ViewLoadingScreen.d.ts +3 -2
- package/esm/ui/ViewLoadingScreen.js +4 -2
- package/esm/ui/colorScale.d.ts +5 -1
- package/esm/ui/colorScale.js +12 -10
- package/esm/ui/colors.d.ts +3 -3
- package/esm/ui/colors.js +7 -7
- package/esm/ui/filterMenuItems.d.ts +10 -31
- package/esm/ui/filterMenuItems.js +13 -14
- package/esm/ui/index.d.ts +1 -1
- package/esm/ui/index.js +1 -1
- package/esm/ui/launchTargetsMenuItem.js +9 -13
- package/esm/ui/legendMenuItem.d.ts +4 -4
- package/esm/ui/legendMenuItem.js +4 -4
- package/esm/ui/menuItemAdornment.d.ts +1 -1
- package/esm/ui/menuItemAdornment.js +1 -1
- package/esm/ui/menuItems.d.ts +1 -1
- package/esm/ui/menuItems.js +1 -1
- package/esm/ui/menuLabels.d.ts +2 -2
- package/esm/ui/menuLabels.js +2 -2
- package/esm/ui/palette.d.ts +2 -2
- package/esm/ui/palette.js +10 -10
- package/esm/ui/radioSubMenu.d.ts +5 -3
- package/esm/ui/radioSubMenu.js +2 -2
- package/esm/ui/rampKey.d.ts +15 -0
- package/esm/ui/rampKey.js +17 -0
- package/esm/ui/showSubMenu.d.ts +0 -5
- package/esm/ui/showSubMenu.js +6 -15
- package/esm/ui/theme.d.ts +2 -2
- package/esm/ui/theme.js +1 -1
- package/esm/ui/useAssemblySelection.d.ts +2 -0
- package/esm/ui/useMouseTracking.d.ts +8 -20
- package/esm/ui/useMouseTracking.js +23 -62
- package/esm/ui/usePlacedMenuFocus.d.ts +19 -0
- package/esm/ui/usePlacedMenuFocus.js +28 -0
- package/esm/util/Base1DViewModel.d.ts +5 -3
- package/esm/util/Base1DViewModel.js +5 -3
- package/esm/util/SvgCanvas.js +1 -1
- package/esm/util/aggregateFieldName.d.ts +1 -10
- package/esm/util/aggregateFieldName.js +1 -8
- package/esm/util/analytics.d.ts +4 -6
- package/esm/util/analytics.js +143 -12
- package/esm/util/bezierConnector.d.ts +20 -0
- package/esm/util/bezierConnector.js +34 -100
- package/esm/util/cacheBudgets.d.ts +3 -0
- package/esm/util/cacheBudgets.js +3 -0
- package/esm/util/categoricalField.d.ts +2 -2
- package/esm/util/categoricalField.js +3 -3
- package/esm/util/color/index.d.ts +1 -1
- package/esm/util/color/index.js +2 -2
- package/esm/util/color-bits/bit.js +1 -1
- package/esm/util/color-bits/parse.js +6 -6
- package/esm/util/colorBits.d.ts +15 -4
- package/esm/util/colorBits.js +38 -15
- package/esm/util/colorRamp.d.ts +3 -3
- package/esm/util/colorRamp.js +14 -2
- package/esm/util/colorScale.d.ts +114 -20
- package/esm/util/colorScale.js +124 -26
- package/esm/util/colorSchemes.d.ts +6 -4
- package/esm/util/colorSchemes.js +6 -3
- package/esm/util/createSvgRasterCanvas.d.ts +14 -1
- package/esm/util/createSvgRasterCanvas.js +36 -12
- package/esm/util/diagonalizeRegions.js +18 -9
- package/esm/util/featureTransforms.d.ts +2 -2
- package/esm/util/featureTransforms.js +85 -135
- package/esm/util/fileHandleStore.js +5 -0
- package/esm/util/groupKeys.d.ts +5 -4
- package/esm/util/groupKeys.js +15 -9
- package/esm/util/index.js +1 -1
- package/esm/util/installFetch.d.ts +2 -2
- package/esm/util/installPrerequisiteFetch.d.ts +8 -3
- package/esm/util/installPrerequisiteFetch.js +9 -7
- package/esm/util/io/RemoteFileWithRangeCache.d.ts +1 -1
- package/esm/util/io/RemoteFileWithRangeCache.js +1 -1
- package/esm/util/jexl.js +1 -1
- package/esm/util/layouts/GranularRectLayout.d.ts +19 -3
- package/esm/util/layouts/GranularRectLayout.js +57 -34
- package/esm/util/leadingEdgeAutorun.d.ts +9 -1
- package/esm/util/leadingEdgeAutorun.js +5 -2
- package/esm/util/markEncoding.d.ts +10 -8
- package/esm/util/markEncoding.js +50 -12
- package/esm/util/markEncodingTypes.d.ts +74 -20
- package/esm/util/originCut.d.ts +14 -0
- package/esm/util/originCut.js +19 -0
- package/esm/util/paintLayer.d.ts +1 -1
- package/esm/util/paintLayer.js +4 -3
- package/esm/util/pathSeries.d.ts +18 -0
- package/esm/util/pathSeries.js +143 -0
- package/esm/util/pressOwner.d.ts +20 -0
- package/esm/util/pressOwner.js +26 -0
- package/esm/util/quantileExtent.d.ts +3 -3
- package/esm/util/quantileExtent.js +3 -3
- package/esm/util/rowStackGeometry.d.ts +1 -1
- package/esm/util/rowStackGeometry.js +1 -1
- package/esm/util/sessionActivity.d.ts +36 -0
- package/esm/util/sessionActivity.js +88 -0
- package/esm/util/stepOutputs.d.ts +165 -0
- package/esm/util/stepOutputs.js +201 -0
- package/esm/util/stepTables.d.ts +7 -3
- package/esm/util/stepTables.js +86 -3
- package/esm/util/thresholdScale.d.ts +1 -1
- package/esm/util/thresholdScale.js +1 -1
- package/esm/util/tracks.js +1 -1
- package/esm/util/usePanZoom.js +4 -10
- package/esm/util/windowStep.d.ts +6 -0
- package/esm/util/windowStep.js +153 -0
- package/package.json +23 -15
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +0 -40
- package/esm/data_adapters/BaseAdapter/featureDensity.js +0 -31
- package/esm/rpc/methods/CoreGetFeatureDensity.d.ts +0 -11
- package/esm/rpc/methods/CoreGetFeatureDensity.js +0 -22
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// Generated by scripts/generateReExports.ts — do not edit by hand.
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// The export names each key in list.ts carries, so a plugin build can bind every import to a name this @jbrowse/core serves and fail on one it does not. A framework key with no names is served whole.
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// Regenerate with `pnpm autogen`.
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const names = {
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'@jbrowse/mobx-state-tree': ['addDisposer', 'addMiddleware', 'applyAction', 'applyPatch', 'applySnapshot', 'asArrayType', 'asMapType', 'asModelType', 'cannotDetermineSubtype', 'cast', 'castFlowReturn', 'castToReferenceSnapshot', 'castToSnapshot', 'clone', 'createActionTrackingMiddleware', 'createActionTrackingMiddleware2', 'decorate', 'destroy', 'detach', 'escapeJsonPath', 'extendInstance', 'flow', 'getChildType', 'getEnv', 'getIdentifier', 'getLivelinessChecking', 'getMembers', 'getNodeId', 'getParent', 'getParentOfType', 'getPath', 'getPathParts', 'getPropertyMembers', 'getRelativePath', 'getRoot', 'getRunningActionContext', 'getSnapshot', 'getType', 'getUnionSubtypes', 'getWrappedType', 'hasParent', 'hasParentOfType', 'isActionContextChildOf', 'isActionContextThisOrChildOf', 'isAlive', 'isArrayType', 'isFrozenType', 'isIdentifierType', 'isLateType', 'isLiteralType', 'isMapType', 'isModelType', 'isOptionalType', 'isPrimitiveType', 'isProtected', 'isReferenceType', 'isRefinementType', 'isRoot', 'isStateTreeNode', 'isType', 'isUnionType', 'isValidReference', 'joinJsonPath', 'onAction', 'onPatch', 'onSnapshot', 'protect', 'recordActions', 'recordPatches', 'resolveIdentifier', 'resolvePath', 'setDevMode', 'setLivelinessChecking', 'setLivelynessChecking', 'setTypeChecking', 'splitJsonPath', 't', 'toGenerator', 'toGeneratorFunction', 'tryReference', 'tryResolve', 'typecheck', 'types', 'unescapeJsonPath', 'unprotect', 'unwrapType', 'walk'],
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'@mui/material': ['Accordion', 'AccordionActions', 'AccordionDetails', 'AccordionSummary', 'Alert', 'AlertTitle', 'Autocomplete', 'Avatar', 'AvatarGroup', 'Backdrop', 'Badge', 'Box', 'Breadcrumbs', 'Button', 'ButtonGroup', 'Card', 'CardActionArea', 'CardActions', 'CardContent', 'CardHeader', 'CardMedia', 'Checkbox', 'Chip', 'CircularProgress', 'ClickAwayListener', 'Collapse', 'Container', 'Dialog', 'DialogActions', 'DialogContent', 'DialogContentText', 'DialogTitle', 'Divider', 'Drawer', 'Fab', 'Fade', 'FilledInput', 'FormControl', 'FormControlLabel', 'FormGroup', 'FormHelperText', 'FormLabel', 'Grid', 'Grid2', 'Grow', 'Icon', 'IconButton', 'Input', 'InputAdornment', 'InputBase', 'InputLabel', 'LinearProgress', 'Link', 'List', 'ListItem', 'ListItemAvatar', 'ListItemButton', 'ListItemIcon', 'ListItemSecondaryAction', 'ListItemText', 'ListSubheader', 'Menu', 'MenuItem', 'MenuList', 'Modal', 'NativeSelect', 'OutlinedInput', 'Pagination', 'PaginationItem', 'Paper', 'Popover', 'Popper', 'Portal', 'Radio', 'RadioGroup', 'Rating', 'ScopedCssBaseline', 'Select', 'Skeleton', 'Slider', 'Snackbar', 'SnackbarContent', 'SpeedDial', 'SpeedDialAction', 'SpeedDialIcon', 'Stack', 'Step', 'StepButton', 'StepConnector', 'StepIcon', 'StepLabel', 'Stepper', 'SvgIcon', 'Switch', 'Tab', 'Table', 'TableBody', 'TableCell', 'TableContainer', 'TableFooter', 'TableHead', 'TablePagination', 'TableRow', 'TableSortLabel', 'Tabs', 'TextField', 'TextareaAutosize', 'ThemeProvider', 'ToggleButton', 'ToggleButtonGroup', 'Toolbar', 'Tooltip', 'Typography', 'alpha', 'createTheme', 'useTheme'],
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'@mui/material/Accordion': [],
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'@mui/material/AccordionActions': [],
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'@mui/material/AccordionDetails': [],
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'@mui/material/AccordionSummary': [],
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'@mui/material/Alert': [],
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'@mui/material/AlertTitle': [],
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'@mui/material/Autocomplete': [],
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'@mui/material/Avatar': [],
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'@mui/material/AvatarGroup': [],
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'@mui/material/Backdrop': [],
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'@mui/material/Badge': [],
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'@mui/material/Box': [],
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'@mui/material/Breadcrumbs': [],
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'@mui/material/Button': [],
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'@mui/material/ButtonGroup': [],
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'@mui/material/Card': [],
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'@mui/material/CardActionArea': [],
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'@mui/material/CardActions': [],
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'@mui/material/CardContent': [],
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'@mui/material/CardHeader': [],
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'@mui/material/CardMedia': [],
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'@mui/material/Checkbox': [],
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'@mui/material/Chip': [],
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'@mui/material/CircularProgress': [],
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'@mui/material/ClickAwayListener': [],
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'@mui/material/Collapse': [],
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'@mui/material/Container': [],
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'@mui/material/Dialog': [],
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'@mui/material/DialogActions': [],
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'@mui/material/DialogContent': [],
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'@mui/material/DialogContentText': [],
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'@mui/material/DialogTitle': [],
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'@mui/material/Divider': [],
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'@mui/material/Drawer': [],
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'@mui/material/Fab': [],
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'@mui/material/Fade': [],
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'@mui/material/FilledInput': [],
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'@mui/material/FormControl': [],
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'@mui/material/FormControlLabel': [],
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'@mui/material/FormGroup': [],
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'@mui/material/FormHelperText': [],
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'@mui/material/FormLabel': [],
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'@mui/material/Grid': [],
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'@mui/material/Grid2': [],
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'@mui/material/Grow': [],
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'@mui/material/Icon': [],
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'@mui/material/IconButton': [],
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'@mui/material/Input': [],
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'@mui/material/InputAdornment': [],
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'@mui/material/InputBase': [],
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'@mui/material/InputLabel': [],
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'@mui/material/LinearProgress': [],
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'@mui/material/Link': [],
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'@mui/material/List': [],
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'@mui/material/ListItem': [],
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'@mui/material/ListItemAvatar': [],
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'@mui/material/ListItemButton': [],
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'@mui/material/ListItemIcon': [],
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'@mui/material/ListItemSecondaryAction': [],
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'@mui/material/ListItemText': [],
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'@mui/material/ListSubheader': [],
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'@mui/material/Menu': [],
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'@mui/material/MenuItem': [],
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'@mui/material/MenuList': [],
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'@mui/material/Modal': [],
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'@mui/material/NativeSelect': [],
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'@mui/material/OutlinedInput': [],
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'@mui/material/Pagination': [],
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'@mui/material/PaginationItem': [],
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'@mui/material/Paper': [],
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'@mui/material/Popover': [],
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'@mui/material/Popper': [],
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'@mui/material/Portal': [],
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'@mui/material/Radio': [],
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'@mui/material/RadioGroup': [],
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'@mui/material/Rating': [],
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'@mui/material/ScopedCssBaseline': [],
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'@mui/material/Select': [],
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'@mui/material/Skeleton': [],
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'@mui/material/Slider': [],
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'@mui/material/Snackbar': [],
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'@mui/material/SnackbarContent': [],
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'@mui/material/SpeedDial': [],
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'@mui/material/SpeedDialAction': [],
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'@mui/material/SpeedDialIcon': [],
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'@mui/material/Stack': [],
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'@mui/material/Step': [],
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'@mui/material/StepButton': [],
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'@mui/material/StepConnector': [],
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'@mui/material/StepIcon': [],
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'@mui/material/StepLabel': [],
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'@mui/material/Stepper': [],
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'@mui/material/styles': ['CssVarsProvider', 'Experimental_CssVarsProvider', 'StyledEngineProvider', 'THEME_ID', 'ThemeProvider', 'adaptV4Theme', 'alpha', 'createColorScheme', 'createStyles', 'createTheme', 'css', 'darken', 'decomposeColor', 'duration', 'easing', 'emphasize', 'enhanceHighContrast', 'experimental_sx', 'extendTheme', 'getContrastRatio', 'getInitColorSchemeScript', 'getLuminance', 'getOverlayAlpha', 'hexToRgb', 'hslToRgb', 'keyframes', 'makeStyles', 'private_createTypography', 'private_excludeVariablesFromRoot', 'recomposeColor', 'responsiveFontSizes', 'rgbToHex', 'shouldSkipGeneratingVar', 'styled', 'unstable_createBreakpoints', 'unstable_createMuiStrictModeTheme', 'unstable_getUnit', 'unstable_toUnitless', 'useColorScheme', 'useTheme', 'useThemeProps', 'withStyles', 'withTheme'],
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'@mui/material/SvgIcon': ['createSvgIcon'],
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'@mui/material/Switch': [],
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'@mui/material/Tab': [],
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'@mui/material/Table': [],
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'@mui/material/TableBody': [],
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'@mui/material/TableCell': [],
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'@mui/material/TableContainer': [],
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'@mui/material/TableFooter': [],
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'@mui/material/TableHead': [],
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'@mui/material/TablePagination': [],
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'@mui/material/TableRow': [],
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'@mui/material/TableSortLabel': [],
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'@mui/material/Tabs': [],
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'@mui/material/TextareaAutosize': [],
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'@mui/material/TextField': [],
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'@mui/material/ToggleButton': [],
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'@mui/material/ToggleButtonGroup': [],
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'@mui/material/Toolbar': [],
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'@mui/material/Tooltip': [],
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'@mui/material/Typography': [],
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'@mui/material/utils': ['capitalize', 'createChainedFunction', 'createSvgIcon', 'debounce', 'deprecatedPropType', 'getActiveElement', 'isMuiElement', 'mergeSlotProps', 'ownerDocument', 'ownerWindow', 'requirePropFactory', 'setRef', 'unstable_ClassNameGenerator', 'unstable_memoTheme', 'unstable_useEnhancedEffect', 'unstable_useId', 'unsupportedProp', 'useControlled', 'useEventCallback', 'useForkRef'],
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'@mui/x-data-grid': ['DataGrid', 'GridActionsCellItem', 'GridAddIcon', 'GridArrowDownwardIcon', 'GridArrowUpwardIcon', 'GridCellCheckboxForwardRef', 'GridCellCheckboxRenderer', 'GridCheckCircleIcon', 'GridCheckIcon', 'GridCloseIcon', 'GridColumnHeaderSeparator', 'GridColumnHeaderSortIcon', 'GridColumnIcon', 'GridColumnMenu', 'GridColumnMenuContainer', 'GridDragIcon', 'GridExpandMoreIcon', 'GridFilterAltIcon', 'GridFilterForm', 'GridFilterListIcon', 'GridFilterPanel', 'GridFooter', 'GridFooterContainer', 'GridHeader', 'GridHeaderCheckbox', 'GridKeyboardArrowRight', 'GridLoadIcon', 'GridLoadingOverlay', 'GridMenuIcon', 'GridMoreVertIcon', 'GridNoRowsOverlay', 'GridOverlay', 'GridPagination', 'GridPanel', 'GridPanelWrapper', 'GridRemoveIcon', 'GridRoot', 'GridRowCount', 'GridSearchIcon', 'GridSelectedRowCount', 'GridSeparatorIcon', 'GridTableRowsIcon', 'GridToolbarExportContainer', 'GridTripleDotsVerticalIcon', 'GridViewHeadlineIcon', 'GridViewStreamIcon'],
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'mobx': ['$mobx', 'FlowCancellationError', 'ObservableMap', 'ObservableSet', 'Reaction', '_allowStateChanges', '_allowStateChangesInsideComputed', '_allowStateReadsEnd', '_allowStateReadsStart', '_autoAction', '_autoActionBound', '_endAction', '_getAdministration', '_getGlobalState', '_interceptReads', '_isComputingDerivation', '_resetGlobalState', '_startAction', 'action', 'actionBound', 'autorun', 'compareDefault', 'compareIdentity', 'compareShallow', 'compareStructural', 'computed', 'computedStruct', 'configure', 'createAtom', 'default', 'defineProperty', 'entries', 'extendObservable', 'flow', 'flowBound', 'flowResult', 'get', 'getAtom', 'getDebugName', 'getDependencyTree', 'getObserverTree', 'has', 'intercept', 'isAction', 'isBoxedObservable', 'isComputed', 'isComputedProp', 'isFlow', 'isFlowCancellationError', 'isObservable', 'isObservableArray', 'isObservableMap', 'isObservableObject', 'isObservableProp', 'isObservableSet', 'keys', 'makeAutoObservable', 'makeObservable', 'observable', 'observableDeep', 'observableRef', 'observableShallow', 'observableStruct', 'observe', 'onBecomeObserved', 'onBecomeUnobserved', 'onReactionError', 'override', 'ownKeys', 'reaction', 'remove', 'runInAction', 'set', 'spy', 'toJS', 'transaction', 'untracked', 'values', 'when'],
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'mobx-react': ['Observer', '_observerFinalizationRegistry', 'clearTimers', 'default', 'enableStaticRendering', 'isUsingStaticRendering', 'observer', 'useLocalObservable'],
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'mobx-state-tree': ['addDisposer', 'addMiddleware', 'applyAction', 'applyPatch', 'applySnapshot', 'asArrayType', 'asMapType', 'asModelType', 'cannotDetermineSubtype', 'cast', 'castFlowReturn', 'castToReferenceSnapshot', 'castToSnapshot', 'clone', 'createActionTrackingMiddleware', 'createActionTrackingMiddleware2', 'decorate', 'destroy', 'detach', 'escapeJsonPath', 'extendInstance', 'flow', 'getChildType', 'getEnv', 'getIdentifier', 'getLivelinessChecking', 'getMembers', 'getNodeId', 'getParent', 'getParentOfType', 'getPath', 'getPathParts', 'getPropertyMembers', 'getRelativePath', 'getRoot', 'getRunningActionContext', 'getSnapshot', 'getType', 'getUnionSubtypes', 'getWrappedType', 'hasParent', 'hasParentOfType', 'isActionContextChildOf', 'isActionContextThisOrChildOf', 'isAlive', 'isArrayType', 'isFrozenType', 'isIdentifierType', 'isLateType', 'isLiteralType', 'isMapType', 'isModelType', 'isOptionalType', 'isPrimitiveType', 'isProtected', 'isReferenceType', 'isRefinementType', 'isRoot', 'isStateTreeNode', 'isType', 'isUnionType', 'isValidReference', 'joinJsonPath', 'onAction', 'onPatch', 'onSnapshot', 'protect', 'recordActions', 'recordPatches', 'resolveIdentifier', 'resolvePath', 'setDevMode', 'setLivelinessChecking', 'setLivelynessChecking', 'setTypeChecking', 'splitJsonPath', 't', 'toGenerator', 'toGeneratorFunction', 'tryReference', 'tryResolve', 'typecheck', 'types', 'unescapeJsonPath', 'unprotect', 'unwrapType', 'walk'],
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'react': ['Activity', 'Children', 'Component', 'Fragment', 'Profiler', 'PureComponent', 'StrictMode', 'Suspense', 'ViewTransition', '__CLIENT_INTERNALS_DO_NOT_USE_OR_WARN_USERS_THEY_CANNOT_UPGRADE', '__COMPILER_RUNTIME', 'act', 'addTransitionType', 'cache', 'cacheSignal', 'captureOwnerStack', 'cloneElement', 'createContext', 'createElement', 'createRef', 'default', 'forwardRef', 'isValidElement', 'lazy', 'memo', 'startTransition', 'unstable_useCacheRefresh', 'use', 'useActionState', 'useCallback', 'useContext', 'useDebugValue', 'useDeferredValue', 'useEffect', 'useEffectEvent', 'useId', 'useImperativeHandle', 'useInsertionEffect', 'useLayoutEffect', 'useMemo', 'useOptimistic', 'useReducer', 'useRef', 'useState', 'useSyncExternalStore', 'useTransition', 'version'],
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'react-dom': ['__DOM_INTERNALS_DO_NOT_USE_OR_WARN_USERS_THEY_CANNOT_UPGRADE', 'browser', 'createPortal', 'default', 'flushSync', 'preconnect', 'prefetchDNS', 'preinit', 'preinitModule', 'preload', 'preloadModule', 'requestFormReset', 'unstable_batchedUpdates', 'useFormState', 'useFormStatus', 'version'],
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'react-dom/client': ['createRoot', 'default', 'hydrateRoot', 'version'],
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'react/jsx-runtime': ['Fragment', 'default', 'jsx', 'jsxs'],
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'tss-react': ['cx', 'keyframes', 'makeStyles'],
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'tss-react/mui': ['cx', 'keyframes', 'makeStyles'],
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'@jbrowse/core/assemblyManager': ['assemblyConfigSchemaFactory', 'default'],
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'@jbrowse/core/assemblyManager/assembly': ['buildRefNameMaps', 'default', 'getSequenceAdapterConfig', 'lookupGeneticCodeId', 'refNameMismatchMessage'],
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'@jbrowse/core/assemblyManager/assemblyConfigSchema': ['default', 'expandAssemblySequence', 'expandAssemblySequenceAdapter', 'expandAssemblyShorthand', 'expandSidecarShorthand', 'refNameAliasAdapterType'],
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'@jbrowse/core/assemblyManager/expandAssemblyConfigShorthand': ['expandAssemblySequence', 'expandAssemblySequenceAdapter', 'expandAssemblyShorthand', 'expandSidecarShorthand', 'refNameAliasAdapterType', 'referenceSequenceTrackId'],
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'@jbrowse/core/assemblyManager/refNameMaps': ['buildRefNameMaps', 'checkRefName', 'groupNamesByCanonicalRefName'],
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'@jbrowse/core/BaseFeatureWidget': ['configSchema', 'stateModelFactory'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': ['BaseAttributes', 'BaseCard', 'BaseCoreDetails', 'FeatureDetails', 'FeatureDetailsFrame', 'FeatureWash', 'default', 'filterByValueItems', 'jexlFilterDisplay'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes': ['default', 'hasAttributeRows', 'withoutLocations'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard': ['default'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails': ['default'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter': ['default'],
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField': ['default'],
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'@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog': ['default'],
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'@jbrowse/core/checkPlugins': ['PLUGIN_STORE_URL', 'TRUSTED_PLUGIN_URL_PREFIXES', 'checkPlugins', 'checkPluginsAgainstStore', 'fetchPlugins', 'forgetFetchedPlugins'],
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'@jbrowse/core/configuration': ['ConfigurationReference', 'ConfigurationSchema', 'ConfigurationSchemaUnion', 'DEFAULT_FORMAT_DETAILS_DEPTH', 'FormatAboutConfigSchemaFactory', 'FormatDetailsConfigSchemaFactory', 'PLOT_VOCABULARY', 'applyConfSettings', 'applyRetiredSpellings', 'arraySlotUnion', 'bamIndexFields', 'bamIndexSchema', 'declaredSnapshot', 'evaluateForFeature', 'evaluateJexl', 'expandTabixShorthand', 'expandUriShorthand', 'fillIndexType', 'fillLocations', 'fullConfSnapshot', 'getConf', 'getConfigurationSchemaDefinition', 'getConfigurationSchemaMetadata', 'getConfigurationSchemaUnion', 'getSlotDefinition', 'getTypeNamesFromExplicitlyTypedUnion', 'hydrateTrackConfig', 'indexSnapshot', 'indexSuffix', 'isBareConfigurationSchemaType', 'isCallbackValue', 'isConfigurationModel', 'isConfigurationSchemaType', 'isConfigurationSlot', 'isConstantEntry', 'isCsiLocation', 'isSlotDefinitionEntry', 'liftPlot', 'liftRetiredSpellings', 'makeSlotFacade', 'mergeFormatCallbacks', 'parsePlot', 'partitionAdvanced', 'plotKeysOf', 'plotOf', 'plotWrites', 'preProcessConfigSnapshot', 'preProcessSnapshotWith', 'readConfObject', 'readConfigValue', 'refusingUndeclaredKeys', 'requestedIndexType', 'requirementProblems', 'setConf', 'shorthandTargets', 'shorthandTargetsOf', 'slotChoices', 'slotValueRefusal', 'tabixIndexFields', 'tabixIndexSchema', 'tabixIndexSnapshot', 'toCallbackValue', 'toFixedValue'],
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'@jbrowse/core/configuration/configurationSchema': ['ConfigurationReference', 'ConfigurationSchema', 'hydrateTrackConfig'],
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'@jbrowse/core/data_adapters/adapterSessionRefcount': ['releaseAdapterSession', 'retainAdapterSession'],
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'@jbrowse/core/data_adapters/BaseAdapter': ['BaseAdapter', 'BaseFeatureDataAdapter', 'BaseSequenceAdapter', 'cachedSetup', 'isFeatureAdapter', 'isRefNameAliasAdapter', 'isRegionsAdapter', 'isSequenceAdapter', 'isTextSearchAdapter'],
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'@jbrowse/core/data_adapters/BaseAdapter/getAdapterId': ['getAdapterId'],
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'@jbrowse/core/data_adapters/BaseAdapter/rowSources': ['listsRowSources'],
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|
151
|
+
'@jbrowse/core/data_adapters/BaseAdapter/stats': ['aggregateQuantitativeStats', 'blankStats', 'calculateFeatureDensityStats'],
|
|
152
|
+
'@jbrowse/core/data_adapters/BaseAdapter/types': [],
|
|
153
|
+
'@jbrowse/core/data_adapters/BaseAdapter/zoomRange': [],
|
|
154
|
+
'@jbrowse/core/data_adapters/dataAdapterCache': ['READS_REFERENCE', 'adapterConfigCacheKey', 'adapterRequests', 'cachedAdapterCount', 'clearAdapterCache', 'freeAdapterResources', 'getAdapter', 'keepAdapters'],
|
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155
|
+
'@jbrowse/core/data_adapters/getFeatureAdapter': ['getFeatureAdapter', 'getFeatureAdapterOrThrow', 'tablesAdapter', 'tablesFeatureAdapter'],
|
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156
|
+
'@jbrowse/core/data_adapters/getSequenceSubAdapter': ['getSequenceSubAdapter'],
|
|
157
|
+
'@jbrowse/core/pluggableElementTypes': ['AdapterType', 'AddTrackWorkflowType', 'BaseConnectionModelFactory', 'BaseDisplay', 'BaseInternetAccountConfig', 'BaseViewModel', 'ConnectionType', 'DisplayType', 'InternetAccount', 'InternetAccountType', 'RpcMethodType', 'RpcMethodTypeWithRenameRegion', 'RpcMethodTypeWithRenameRegions', 'TextSearchAdapterType', 'TrackType', 'ViewType', 'WidgetType', 'addDisplayMenuItems', 'addViewMenuItems', 'baseConnectionConfig', 'createBaseTrackConfig', 'createBaseTrackModel', 'extendDisplayType', 'extendViewType', 'preprocessTrackConfigSnapshot'],
|
|
158
|
+
'@jbrowse/core/pluggableElementTypes/AdapterType': ['default'],
|
|
159
|
+
'@jbrowse/core/pluggableElementTypes/ConnectionType': ['default'],
|
|
160
|
+
'@jbrowse/core/pluggableElementTypes/DisplayType': ['default'],
|
|
161
|
+
'@jbrowse/core/pluggableElementTypes/InternetAccountType': ['default'],
|
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162
|
+
'@jbrowse/core/pluggableElementTypes/models': ['BaseConnectionModelFactory', 'BaseDisplay', 'BaseInternetAccountConfig', 'BaseViewModel', 'InternetAccount', 'baseConnectionConfig', 'createBaseTrackConfig', 'createBaseTrackModel', 'migrateRetiredDisplays', 'preprocessTrackConfigSnapshot'],
|
|
163
|
+
'@jbrowse/core/pluggableElementTypes/models/assertDisplayContract': ['assertDisplayContract', 'makeRetryContractCheck', 'noteFetchStarted', 'takeFetchStarted'],
|
|
164
|
+
'@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig': ['default'],
|
|
165
|
+
'@jbrowse/core/pluggableElementTypes/models/BaseViewModel': ['BaseViewModelWithDisplayedRegions', 'default'],
|
|
166
|
+
'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain': ['default'],
|
|
167
|
+
'@jbrowse/core/pluggableElementTypes/RpcMethodType': ['convertFileHandleLocations', 'default'],
|
|
168
|
+
'@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions': ['default'],
|
|
169
|
+
'@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion': ['default'],
|
|
170
|
+
'@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegions': ['default'],
|
|
171
|
+
'@jbrowse/core/pluggableElementTypes/TextSearchAdapterType': ['default'],
|
|
172
|
+
'@jbrowse/core/pluggableElementTypes/TrackType': ['default'],
|
|
173
|
+
'@jbrowse/core/pluggableElementTypes/ViewType': ['default'],
|
|
174
|
+
'@jbrowse/core/pluggableElementTypes/WidgetType': ['default'],
|
|
175
|
+
'@jbrowse/core/Plugin': ['default'],
|
|
176
|
+
'@jbrowse/core/pluginDefinitions': ['dedupePlugins', 'desktopVendoredPluginNames', 'dropVendoredPlugins', 'holdsPlugin', 'holdsPluginVersion', 'isESMPluginDefinition', 'isPluginUrl', 'isStorePluginDefinition', 'isUMDPluginDefinition', 'maybePluginUrl', 'pluginDefinitionMetadata', 'pluginDescriptionString', 'pluginLabel', 'pluginName', 'pluginUrl', 'pluginsNotIn', 'resolvedPluginUrl', 'samePlugin', 'storePluginName', 'vendoredPluginNames'],
|
|
177
|
+
'@jbrowse/core/PluginLoader': ['default', 'preloadUMDBundles', 'workerScriptLoadMessage'],
|
|
178
|
+
'@jbrowse/core/PluginManager': ['corePluginRecords', 'default', 'pluggableElementTypeGroups', 'pluggableStateModelGroup', 'wrappedComponent'],
|
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179
|
+
'@jbrowse/core/rpc/byteBudget': ['adapterByteLimit', 'isRegionRefused', 'isRegionTooLargeError', 'largestRegionBytes', 'measureRegionBytes', 'measuredBytes', 'measurementPartial', 'overByteBudget', 'totalRegionBytes'],
|
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180
|
+
'@jbrowse/core/rpc/RpcManager': ['default'],
|
|
181
|
+
'@jbrowse/core/rpc/RpcRegistry': [],
|
|
182
|
+
'@jbrowse/core/rpc/WebWorkerRpcDriver': ['default'],
|
|
183
|
+
'@jbrowse/core/svg/constants': ['exportMargin'],
|
|
184
|
+
'@jbrowse/core/svg/exportViewSvg': ['exportViewSvg'],
|
|
185
|
+
'@jbrowse/core/svg/saveSvgAsImage': ['saveSvgAsImage', 'svgHtmlToPngBlob'],
|
|
186
|
+
'@jbrowse/core/svg/serializeSvg': ['normalizeSvgMarkup', 'serializeSvg'],
|
|
187
|
+
'@jbrowse/core/svg/SvgExport': ['SVGBackground', 'SVGExportRoot', 'SVGMessageBox', 'SvgChrome', 'SvgClipRect'],
|
|
188
|
+
'@jbrowse/core/svg/svgId': ['svgNodeId', 'svgSafeId'],
|
|
189
|
+
'@jbrowse/core/svg/svgReady': ['awaitSvgReady', 'awaitSvgRenders', 'awaitViewInitialized', 'computeSvgReady', 'throwOnExportErrors'],
|
|
190
|
+
'@jbrowse/core/svg/SvgThemeProviders': ['SvgThemeProviders'],
|
|
191
|
+
'@jbrowse/core/svg/trackNames': ['notifySkippedSvgTracks', 'svgTrackName'],
|
|
192
|
+
'@jbrowse/core/svg/wrapSvgExport': ['wrapSvgExport'],
|
|
193
|
+
'@jbrowse/core/TextSearch/BaseResults': ['RefSequenceResult', 'default'],
|
|
194
|
+
'@jbrowse/core/TextSearch/places': ['canonicalLocString', 'groupByPlace'],
|
|
195
|
+
'@jbrowse/core/TextSearch/TextSearchManager': ['default'],
|
|
196
|
+
'@jbrowse/core/ui': ['ActionLink', 'AssemblySelector', 'BaseExportSvgDialog', 'BaseTooltip', 'CONTEXT_MENU_Z_INDEX', 'CascadingMenu', 'CascadingMenuButton', 'ConfirmDialog', 'ContextMenu', 'CopyToClipboardButton', 'Crosshairs', 'Dialog', 'EditableTypography', 'ErrorBanner', 'ErrorBar', 'ErrorMessage', 'ErrorOverlay', 'ExportSvgDialog', 'ExternalLink', 'FatalErrorDialog', 'FileDropZone', 'FileSelector', 'GpuFallbackButton', 'INLINE_MENU_ROW_WIDTH', 'InfoDialog', 'JexlFilterDialog', 'LAUNCH_LABEL', 'LEGEND_ROW_HEIGHT', 'LEGEND_SWATCH', 'LabeledCheckbox', 'LegendSwatchGlyph', 'LoadingEllipses', 'LoadingOverlay', 'LoadingProgress', 'LogoFull', 'Logomark', 'MAX_LEGEND_ITEMS', 'Menu', 'MonospaceTextField', 'NumberTextField', 'PluggableComponent', 'PluggableComponents', 'PluggableElements', 'PrerenderedCanvas', 'ProgressChip', 'RefNameAutocomplete', 'RefNameAutocompleteEndAdornment', 'ReplaceCurrentViewButton', 'ResetToDefaultButton', 'ResizeHandle', 'SanitizedHTML', 'ScrollChrome', 'ScrollEdgeShadow', 'SettingsChangesTable', 'ShareLinkField', 'SingleSlider', 'SliderTooltip', 'StatusProgressBar', 'SubmitDialog', 'SubmitForm', 'SvgColorLegend', 'TOOLTIP_Z_INDEX', 'TagTextField', 'VIEW_HEADER_HEIGHT', 'VerticalScrollbar', 'ViewLoadingScreen', 'addExtensionElement', 'adornmentReservePx', 'checkboxItem', 'colorFwdStrand', 'colorInterchrom', 'colorLongInsert', 'colorLongreadInv', 'colorPairLL', 'colorPairLR', 'colorPairLRDark', 'colorPairRL', 'colorPairRR', 'colorRevStrand', 'colorScaleIsEmpty', 'colorShortInsert', 'colorSplitReadInversion', 'colorSupplementary', 'colorUnmappedMate', 'colorUnmappedMateDark', 'createJBrowseBaseTheme', 'createJBrowseTheme', 'createJBrowseThemeFromArgs', 'defaultThemes', 'getInputWidth', 'hoverBoxStyle', 'launchTargetsMenuItem', 'legendEntries', 'legendIsReadable', 'legendSpecOf', 'legendSwatches', 'makeSizeMenu', 'makeSizeSubMenu', 'matchesTrackSelector', 'measureLegendText', 'methylated5hmC', 'methylated5mC', 'nonEmptyLegendSections', 'pushIntoSubMenu', 'pushLaunchViewMenuItem', 'radioItems', 'replaceViewAction', 'resolveSubMenu', 'sliderScale', 'staysOpenOnClick', 'tagColorPalette', 'unmethylated5mC', 'useAssemblySelection', 'useCopyToClipboard', 'useExportSvgPreference', 'useMouseState', 'useMouseTracking', 'useRecentLocations', 'wrapComponent'],
|
|
197
|
+
'@jbrowse/core/ui/AddCustomPluginDialog': ['default'],
|
|
198
|
+
'@jbrowse/core/ui/AddGenomePane': ['default'],
|
|
199
|
+
'@jbrowse/core/ui/AppLogo': ['default'],
|
|
200
|
+
'@jbrowse/core/ui/AppReadyMarker': ['default'],
|
|
201
|
+
'@jbrowse/core/ui/BaseTooltip': ['default'],
|
|
202
|
+
'@jbrowse/core/ui/buildExtraTrackMenuItems': ['addExtraTrackMenuItems', 'buildExtraTrackMenuItems'],
|
|
203
|
+
'@jbrowse/core/ui/CascadingMenuButton': ['default'],
|
|
204
|
+
'@jbrowse/core/ui/ColorPicker': ['ColorPopover', 'default'],
|
|
205
|
+
'@jbrowse/core/ui/colors': ['categoricalColor', 'categoricalColorScale', 'categoricalPalette', 'categoricalScale', 'categoricalValueColor', 'category10', 'getQueryColor', 'hashString', 'paletteColors', 'paletteFromSpec', 'refNameColor', 'refNamePaletteColorAt', 'rowPaletteColorAt', 'set1', 'similarColors'],
|
|
206
|
+
'@jbrowse/core/ui/colorScale': ['colorScaleIsEmpty', 'legendSpecOf', 'missingRowLast', 'rampLabels'],
|
|
207
|
+
'@jbrowse/core/ui/ConfirmDialog': ['default'],
|
|
208
|
+
'@jbrowse/core/ui/ContextMenu': ['default'],
|
|
209
|
+
'@jbrowse/core/ui/DataGridFlexContainer': ['default'],
|
|
210
|
+
'@jbrowse/core/ui/Dialog': ['default'],
|
|
211
|
+
'@jbrowse/core/ui/DraggableDialog': ['default'],
|
|
212
|
+
'@jbrowse/core/ui/DropDownMenu': ['default'],
|
|
213
|
+
'@jbrowse/core/ui/EditableTypography': ['default'],
|
|
214
|
+
'@jbrowse/core/ui/ErrorBar': ['default'],
|
|
215
|
+
'@jbrowse/core/ui/ErrorBoundary': ['ErrorBoundary'],
|
|
216
|
+
'@jbrowse/core/ui/ErrorMessageStackTraceDialog': ['default'],
|
|
217
|
+
'@jbrowse/core/ui/ErrorOverlay': ['default'],
|
|
218
|
+
'@jbrowse/core/ui/filterMenuItems': ['activeCount', 'clearAll', 'filterMenuItems', 'undoItems'],
|
|
219
|
+
'@jbrowse/core/ui/gpuFallback': ['GPU_FALLBACK_LABEL', 'GPU_FALLBACK_TOOLTIP', 'disableGpuRendering', 'shouldOfferGpuFallback'],
|
|
220
|
+
'@jbrowse/core/ui/GpuFallbackButton': ['default'],
|
|
221
|
+
'@jbrowse/core/ui/hoverBoxStyle': ['highlightBoxColors', 'hoverBoxStyle'],
|
|
222
|
+
'@jbrowse/core/ui/HoverTooltip': ['default'],
|
|
223
|
+
'@jbrowse/core/ui/Icons': ['Cable', 'DNA', 'Highlighter', 'Indexing', 'InfoIcon', 'TrackSelector'],
|
|
224
|
+
'@jbrowse/core/ui/InfoDialog': ['default'],
|
|
225
|
+
'@jbrowse/core/ui/JexlFilterDialog': ['default'],
|
|
226
|
+
'@jbrowse/core/ui/legendSpec': ['MAX_LEGEND_ITEMS', 'legendEntries', 'legendIsReadable', 'legendSwatches', 'nonEmptyLegendSections'],
|
|
227
|
+
'@jbrowse/core/ui/LegendSwatchGlyph': ['LegendSwatchGlyph'],
|
|
228
|
+
'@jbrowse/core/ui/LoadingEllipses': ['default'],
|
|
229
|
+
'@jbrowse/core/ui/LoadingOverlay': ['default', 'useDelayedFlag'],
|
|
230
|
+
'@jbrowse/core/ui/Logo': ['LogoFull', 'Logomark'],
|
|
231
|
+
'@jbrowse/core/ui/measureLegendText': ['measureLegendText'],
|
|
232
|
+
'@jbrowse/core/ui/Menu': ['default'],
|
|
233
|
+
'@jbrowse/core/ui/menuItems': ['TRACK_MENU_PRIORITY', 'checkboxItem', 'makeRadioSubMenu', 'radioItem', 'radioItems', 'resolveSubMenu', 'showLegendCheckboxItem', 'staysOpenOnClick', 'subMenuIfAny', 'toggleItem', 'withHint', 'withSubHeader'],
|
|
234
|
+
'@jbrowse/core/ui/multiTrackMenuItems': ['addMultiTrackMenuItems', 'buildMultiTrackMenuItems'],
|
|
235
|
+
'@jbrowse/core/ui/palette': ['alpha', 'augmentColor', 'colorFwdStrand', 'colorInterchrom', 'colorLongInsert', 'colorLongreadInv', 'colorPairLL', 'colorPairLR', 'colorPairLRDark', 'colorPairRL', 'colorPairRR', 'colorRevStrand', 'colorShortInsert', 'colorSplitReadInversion', 'colorSupplementary', 'colorUnmappedMate', 'colorUnmappedMateDark', 'darken', 'featureDefaultColor', 'getContrastRatio', 'getContrastText', 'getLuminance', 'grey', 'legacyThemeNames', 'lighten', 'methylated5hmC', 'methylated5mC', 'palettePresets', 'resolvePalette', 'resolveThemeSelection', 'tagColorPalette', 'unmethylated5mC', 'utrDefaultColor'],
|
|
236
|
+
'@jbrowse/core/ui/PaletteContext': ['PaletteProvider', 'SessionPaletteProvider', 'StyleThemeProvider', 'usePalette', 'useSessionPalette', 'useStyleTheme'],
|
|
237
|
+
'@jbrowse/core/ui/persistentScrollbarStyle': ['persistentScrollbarStyle'],
|
|
238
|
+
'@jbrowse/core/ui/PluggableComponents': ['default'],
|
|
239
|
+
'@jbrowse/core/ui/PluginStoreCard': ['default'],
|
|
240
|
+
'@jbrowse/core/ui/PopoverPicker': ['default'],
|
|
241
|
+
'@jbrowse/core/ui/ProgressChip': ['default'],
|
|
242
|
+
'@jbrowse/core/ui/rampKey': ['rampKeyOf'],
|
|
243
|
+
'@jbrowse/core/ui/ResizeHandle': ['default'],
|
|
244
|
+
'@jbrowse/core/ui/ReturnToImportFormDialog': ['default'],
|
|
245
|
+
'@jbrowse/core/ui/SanitizedHTML': ['default'],
|
|
246
|
+
'@jbrowse/core/ui/scrollZoomLabels': ['SCROLL_ZOOM_HELP', 'SCROLL_ZOOM_LABEL'],
|
|
247
|
+
'@jbrowse/core/ui/ScrollZoomToggle': ['default'],
|
|
248
|
+
'@jbrowse/core/ui/SessionJsonPanel': ['default'],
|
|
249
|
+
'@jbrowse/core/ui/ShareLinkField': ['default'],
|
|
250
|
+
'@jbrowse/core/ui/showSubMenu': ['makeShowSubMenu'],
|
|
251
|
+
'@jbrowse/core/ui/Snackbar': ['default'],
|
|
252
|
+
'@jbrowse/core/ui/SnackbarModel': ['default'],
|
|
253
|
+
'@jbrowse/core/ui/StackTraceButton': ['default'],
|
|
254
|
+
'@jbrowse/core/ui/styleTheme': ['DEFAULT_BORDER_RADIUS', 'DEFAULT_FONT_FAMILY', 'DEFAULT_FONT_SIZE', 'DEFAULT_SPACING', 'HTML_FONT_SIZE', 'createSpacing', 'createTypography', 'defaultStyleTheme', 'resolveStyleTheme'],
|
|
255
|
+
'@jbrowse/core/ui/SubmitDialog': ['default'],
|
|
256
|
+
'@jbrowse/core/ui/SvgColorLegend': ['LEGEND_ROW_HEIGHT', 'LEGEND_SWATCH', 'default', 'svgColorLegendWidth'],
|
|
257
|
+
'@jbrowse/core/ui/theme': ['colorFwdStrand', 'colorInterchrom', 'colorLongInsert', 'colorLongreadInv', 'colorPairLL', 'colorPairLR', 'colorPairLRDark', 'colorPairRL', 'colorPairRR', 'colorRevStrand', 'colorShortInsert', 'colorSplitReadInversion', 'colorSupplementary', 'colorUnmappedMate', 'colorUnmappedMateDark', 'createJBrowseBaseTheme', 'createJBrowseTheme', 'createJBrowseThemeFromArgs', 'defaultThemes', 'methylated5hmC', 'methylated5mC', 'tagColorPalette', 'unmethylated5mC'],
|
|
258
|
+
'@jbrowse/core/ui/useCoalescedPointer': ['useCoalescedPointer'],
|
|
259
|
+
'@jbrowse/core/ui/useMouseTracking': ['ClearTrackedPointerProvider', 'useClearTrackedPointer', 'useMouseSelector', 'useMouseState', 'useMouseTracking'],
|
|
260
|
+
'@jbrowse/core/ui/VerticalScrollbar': ['VERTICAL_SCROLLBAR_CLEARANCE', 'VERTICAL_SCROLLBAR_WIDTH', 'default'],
|
|
261
|
+
'@jbrowse/core/ui/zIndexes': ['CONTEXT_MENU_Z_INDEX', 'DRAWER_Z_INDEX', 'FAB_Z_INDEX', 'MUI_TOOLTIP_Z_INDEX', 'TOOLTIP_Z_INDEX'],
|
|
262
|
+
'@jbrowse/core/util': ['AuthNeededError', 'BEZIER_CONNECTOR_MAX_REACH_PX', 'CUBIC_APEX_RATIO', 'ENCODED_PREFIX', 'IUPAC_MOTIF_REGEX', 'IntervalTree', 'JSON_PREFIX', 'MAX_GLOB_REGIONS', 'MAX_ZOOM_RATE_PER_MS', 'MORPH_DURATION_MS', 'SCROLL_ZOOM_FACTOR_DIVISOR', 'SHARE_PREFIX', 'SimpleFeature', 'UNKNOWN', 'UNSUPPORTED', 'UnknownRefNameError', 'ZOOM_ACTIVE_WINDOW_MS', 'accumulateScroll', 'adapterConfigFromSpec', 'adapterNeedsAddTrackComponent', 'addAdapterGuesser', 'addAddTrackComponent', 'addAndShowTrack', 'addOrReplaceView', 'addTrackFromWidget', 'addTrackTypeGuesser', 'aesDecrypt', 'aesEncrypt', 'animationAllowed', 'applyOrderWithin', 'applyZoomAccum', 'assembleLocString', 'assembleLocStringRaw', 'assembleLocStrings', 'avg', 'b64PadSuffix', 'bezierConnectorPath', 'bpSpanPx', 'bpToPx', 'bytesForRegions', 'calculateRedispatchRange', 'canReplaceView', 'canonicalizeViewRefName', 'capitalizeFirst', 'checkAbortSignal', 'clamp', 'clampToContig', 'clampToListedContig', 'clearFileFromCache', 'cmpStr', 'coarseStripHTML', 'codonTable', 'compareLocStrings', 'compareLocs', 'complement', 'complementTable', 'containerDisplaysAssembly', 'createAbortBreakpoint', 'createAbortRotation', 'createProgressReporter', 'createScrollLatch', 'createSharedSetup', 'createStatusChannel', 'createStatusFanOut', 'createStatusWindow', 'dedupe', 'defaultCodonTable', 'defaultStarts', 'diagonalizeRegions', 'diffTrackConfig', 'doesIntersect2', 'downloadPhase', 'downloadStatus', 'drawImageOntoCanvasContext', 'easeInOutCubic', 'encodeSessionParam', 'ensureFileHandleReady', 'expandLooseTrackConfig', 'featureSpanPx', 'fetchAndMaybeUnzip', 'fetchAndMaybeUnzipText', 'fetchJson', 'fileToLocation', 'findFileHandleIds', 'findParentThat', 'findParentThatIs', 'finishAddTrack', 'flattenTrackConfigDelta', 'formatBytes', 'formatRelativeTime', 'fromUrlSafeB64', 'gatherOverlaps', 'generateCodonTable', 'generateUnknownTrackConf', 'generateUnsupportedTrackConf', 'getAssemblyHost', 'getBlob', 'getBlobMap', 'getBpDisplayStr', 'getConfAssemblyNames', 'getContainingDisplay', 'getContainingTrack', 'getContainingView', 'getDialogHost', 'getDisplayStr', 'getEnv', 'getFileFromCache', 'getFileHandle', 'getFileName', 'getFillProps', 'getFrame', 'getLocationUri', 'getNotificationSink', 'getNumberGrouping', 'getPaletteHost', 'getPluginUpdate', 'getRenderingServices', 'getRpcHost', 'getRpcSessionId', 'getSession', 'getSessionServices', 'getStr', 'getStrokeProps', 'getTickDisplayStr', 'getTrackAssemblyNames', 'getTrackName', 'getZoomNormalizer', 'groupBy', 'guessAdapter', 'guessTrackConf', 'guessTrackType', 'handleFetchError', 'hasFileHandlesInCache', 'hashCode', 'hideTrackGeneric', 'indexedDBAvailable', 'installablePlugins', 'installedVersionFromUrl', 'intersection2', 'isAbortException', 'isAbstractMenuManager', 'isActivelyZooming', 'isAppRootModel', 'isAuthNeededException', 'isBlobLocation', 'isDataCurrent', 'isDisplayModel', 'isElectron', 'isFeature', 'isFileHandleLocation', 'isFileSystemAccessSupported', 'isGeneLikeType', 'isGzip', 'isLocalPathLocation', 'isLooseTrackConfig', 'isNode', 'isObject', 'isPalindromic', 'isPluginInstalled', 'isRootModelWithInternetAccounts', 'isRpcResult', 'isSelectionContainer', 'isSequenceMatchType', 'isSessionModel', 'isSessionModelWithConfigEditing', 'isSessionModelWithConnectionEditing', 'isSessionModelWithConnections', 'isSessionModelWithWidgets', 'isSessionServices', 'isSessionWithAddAssembly', 'isSessionWithAddSessionTrack', 'isSessionWithAddTracks', 'isSessionWithDeleteTrackConf', 'isSessionWithMultipleViews', 'isSessionWithPermanentPlugins', 'isSessionWithPublishTrackConf', 'isSessionWithSessionPlugins', 'isSessionWithSessionTracks', 'isSessionWithShareURL', 'isSessionWithViewReplacement', 'isSupportedIndexingAdapter', 'isTrackModel', 'isTrackViewModel', 'isUriLocation', 'isValidTag', 'isViewContainer', 'isViewModel', 'isWebWorker', 'iupacToRegex', 'launchOrReplaceView', 'linkify', 'locStringsToRegions', 'localStorageAvailable', 'localStorageGetBoolean', 'localStorageGetItem', 'localStorageGetJSON', 'localStorageGetNumber', 'localStorageGetStringArray', 'localStorageRemoveItem', 'localStorageSetBoolean', 'localStorageSetItem', 'localStorageSetJSON', 'localStorageSetNumber', 'makeAbortError', 'makeIndex', 'makeIndexType', 'makeTrackId', 'matchRefNames', 'matchTrackId', 'max', 'maxFinite', 'measureGridWidth', 'measureText', 'measuredFont', 'mergeIntervals', 'mergeTrackConfig', 'min', 'minmax', 'morphClockMs', 'namesTemporaryAssembly', 'normalizeWheelDelta', 'notEmpty', 'notifyFeatureDetailsMiss', 'notifyLocalStorageKey', 'objectHash', 'openFeatureWidget', 'parseBpString', 'parseLocString', 'parseLocStringOneBased', 'parseMotifList', 'parseRegionNames', 'pluralize', 'polarToCartesian', 'progressLabel', 'rIC', 'radToDeg', 'readSessionFromDynamo', 'reducePrecision', 'renameComparativeRegions', 'renameRegionIfNeeded', 'renameRegionsIfNeeded', 'reorder', 'reorderWithin', 'resolveNamedRegions', 'resolvePlugin', 'resolveSelectedIds', 'resolveStorePluginRefs', 'resolveStoreRefs', 'resolveUri', 'restoreFileHandles', 'restoreFileHandlesFromSnapshot', 'revcom', 'reverse', 'reverseComplementIupac', 'revlist', 'saveAs', 'saveSvgAsImage', 'scheduleDetachedDestroy', 'selectNamedRegions', 'sessionStorageAvailable', 'sessionStorageGetItem', 'sessionStorageRemoveItem', 'sessionStorageSetItem', 'setBlobMap', 'setFileInCache', 'setNumberGrouping', 'sha256', 'sha256Base64', 'sha256Base64Url', 'shareEndpoint', 'shorten', 'shorten2', 'showTrackGeneric', 'springAnimate', 'statusFraction', 'statusMessageText', 'statusProgressLabel', 'statusReading', 'statusSource', 'stitch', 'storeBlobLocation', 'storeFileHandle', 'storeFileHandleLocation', 'stringify', 'stripAlpha', 'stripFileExtension', 'stripTrackIds', 'subscribeToLocalStorageKey', 'sum', 'svgHtmlToPngBlob', 'tagRegex', 'testAdapter', 'throttleStatusEmits', 'toBase64', 'toBase64Url', 'toLocale', 'toUrlSafeB64', 'toggleTrackGeneric', 'truncateMiddle', 'updateStatus', 'useCreateOnce', 'useDebounce', 'useFinalUnmount', 'useLocalStorage', 'useWidthSetter', 'verifyPermission', 'wheelFrameElapsedMs', 'wheelZoomAccum', 'withAbortCheck', 'withFeatureDetails', 'withProgress'],
|
|
263
|
+
'@jbrowse/core/util/aborting': ['checkAbortSignal', 'createAbortBreakpoint', 'handleFetchError', 'isAbortException', 'makeAbortError', 'withAbortCheck'],
|
|
264
|
+
'@jbrowse/core/util/adapterMetadata': ['createAdapterMetadataFetch'],
|
|
265
|
+
'@jbrowse/core/util/addRelativeUris': ['addRelativeUris', 'stripBaseUris', 'withPageBaseUri'],
|
|
266
|
+
'@jbrowse/core/util/aggregateFieldName': ['aggregateFieldName'],
|
|
267
|
+
'@jbrowse/core/util/alignedBytes': ['DASH', 'LOWER_BIT', 'N_UPPER', 'SPACE', 'firstDrawn', 'isGapByte', 'isUnknownBase', 'lastDrawn', 'sameBase'],
|
|
268
|
+
'@jbrowse/core/util/analytics': ['doAnalytics', 'urlParamNames', 'writeAWSAnalytics', 'writeAWSSessionEnd', 'writeGAAnalytics'],
|
|
269
|
+
'@jbrowse/core/util/animationAllowed': ['MORPH_DURATION_MS', 'animationAllowed', 'easeInOutCubic', 'morphClockMs'],
|
|
270
|
+
'@jbrowse/core/util/assemblyConfigUtils': ['adapterHasSequence', 'adapterLabels', 'adapterTypes', 'applyClassifiedFiles', 'applyPrimaryFile', 'applyTwoBitFile', 'buildAssemblyConf', 'classifyAssemblyFiles', 'classifyFilename', 'classifyLocations', 'clearFormFields', 'clearSequenceFiles', 'detectAdapterType', 'formHasSequence', 'getAdapterConfig', 'getAssemblyName', 'getAssemblyNameFromFilename', 'getBaseAssemblyConfig', 'getMissingSidecars', 'initialFormState', 'isBlank', 'isFormDirty', 'isFormReady', 'isSequenceRole', 'makeSetField', 'partitionExtraLocations', 'sidecarRoles', 'sidecars', 'urlTextToLocations'],
|
|
271
|
+
'@jbrowse/core/util/bandHeight': ['MIN_BAND_HEIGHT', 'boundBandHeight', 'clampBandHeight', 'scaleBandHeights'],
|
|
272
|
+
'@jbrowse/core/util/bandLayout': ['reservedPx', 'stackBands'],
|
|
273
|
+
'@jbrowse/core/util/Base1DUtils': ['basePaintedAt', 'bpOffsetInRegion', 'bpToLinearBp', 'bpToOffset', 'bpToPx', 'clipToDisplayedRegions', 'compareBpOffsets', 'computeMoveToLayout', 'createOverviewLayout', 'getLayoutHighlightCoords', 'getOverviewRegionPxSpan', 'layoutBpToPx', 'moveTo', 'offsetBpToPx', 'pxToBp', 'regionBlocksPxExtent', 'transformPxSpan'],
|
|
274
|
+
'@jbrowse/core/util/Base1DViewModel': ['default'],
|
|
275
|
+
'@jbrowse/core/util/baseDisplayConfig': ['baseDisplayConfig'],
|
|
276
|
+
'@jbrowse/core/util/bgzfWorkerPool': ['sharedBgzfWorkerPool'],
|
|
277
|
+
'@jbrowse/core/util/blockTypes': ['BlockSet', 'wholeBaseRegion', 'wholeBaseRegions'],
|
|
278
|
+
'@jbrowse/core/util/cacheBudgets': ['decompressedBytesBudget'],
|
|
279
|
+
'@jbrowse/core/util/calculateDynamicBlocks': ['default'],
|
|
280
|
+
'@jbrowse/core/util/calculateStaticBlocks': ['default'],
|
|
281
|
+
'@jbrowse/core/util/categoricalField': ['NO_VALUE_LABEL', 'STRAND_FIELD', 'SV_TYPE_FIELD', 'categoricalField', 'dealKeyColors', 'heldSlotsOf', 'keyNames'],
|
|
282
|
+
'@jbrowse/core/util/chooseGridPitch': ['chooseGridPitch'],
|
|
283
|
+
'@jbrowse/core/util/color': ['CSS_COLOR_NAMES', 'MISCONFIGURED_COLOR', 'NO_CATEGORY_COLOR', 'emphasize', 'isNamedColor', 'makeContrasting', 'namedColorToHex', 'randomColor', 'relight'],
|
|
284
|
+
'@jbrowse/core/util/color/cssColorsLevel4': ['CSS_COLOR_NAMES', 'isNamedColor', 'namedColorToHex'],
|
|
285
|
+
'@jbrowse/core/util/colorBits': ['abgrAlpha', 'abgrBlue', 'abgrGreen', 'abgrRed', 'abgrToCssRgba', 'abgrToHex', 'alpha', 'blend', 'cssColorToABGR', 'cssColorToHex', 'cssColorToNormalizedRgb', 'cssColorToNormalizedRgba', 'cssColorToRgb', 'cssColorToRgba', 'darken', 'featureBedColor', 'featureItemRgb', 'formatHEX', 'formatHEXA', 'formatRGBA', 'getAlpha', 'getBlue', 'getGreen', 'getLuminance', 'getRed', 'isCssColor', 'lighten', 'newColor', 'normalizedRgbToABGR', 'normalizedRgbToCss', 'normalizedRgbToCssRgba', 'normalizedRgbToHex', 'packAbgr', 'parse', 'parseCssColor', 'parseCssColorOr', 'setAbgrFill', 'toHSLA', 'toRGBA', 'withAbgrAlpha'],
|
|
286
|
+
'@jbrowse/core/util/colord': ['colord', 'hexToGLrgb'],
|
|
287
|
+
'@jbrowse/core/util/colorRamp': ['VIRIDIS_STOPS', 'buildColorRampLut', 'colorRampStops', 'darkAtLowEnd', 'rampDomain', 'rampLutOf', 'sampleColorRamp', 'stopsFromRampLut'],
|
|
288
|
+
'@jbrowse/core/util/colorScale': ['CATEGORICAL_FIELD_PRESETS', 'COLOR_SCALES', 'FEATURE_FIELD_PRESETS', 'IDENTITY_SCALE', 'MAPQ_BINS', 'MEASURE_FIELD_PRESETS', 'UNIVERSAL_FIELD_PRESETS', 'colorNotices', 'colorProblems', 'colorSlotsOf', 'fieldScaleOf', 'noticeLines', 'paintedScale', 'presetOf', 'scaleEndProblems', 'scaleEndsOf', 'universalPresetOf', 'withImpliedField', 'withPreset'],
|
|
289
|
+
'@jbrowse/core/util/colorSchemes': ['COLOR_SCHEMES', 'DEFAULT_COLOR_SCHEME'],
|
|
290
|
+
'@jbrowse/core/util/convertCodingSequenceToPeptides': ['convertCodingSequenceToPeptides', 'translExceptProteinPositions'],
|
|
291
|
+
'@jbrowse/core/util/copyText': ['copyText', 'copyTextWithSession'],
|
|
292
|
+
'@jbrowse/core/util/createAbortRotation': ['createAbortRotation', 'createStatusChannel'],
|
|
293
|
+
'@jbrowse/core/util/createSvgRasterCanvas': ['MAX_SVG_RASTER_AREA_PX', 'createSvgRasterCanvas', 'svgRasterDataUrl'],
|
|
294
|
+
'@jbrowse/core/util/cssColorParse': ['bedTriple', 'isCssColor', 'parseCssColorOr'],
|
|
295
|
+
'@jbrowse/core/util/deepEqual': ['deepEqual'],
|
|
296
|
+
'@jbrowse/core/util/deepMerge': ['deepMerge'],
|
|
297
|
+
'@jbrowse/core/util/diagonalizeRegions': ['diagonalizeRegions'],
|
|
298
|
+
'@jbrowse/core/util/eventPoint': ['eventPoint'],
|
|
299
|
+
'@jbrowse/core/util/expandLooseSearchIndex': ['expandLooseSearchIndex'],
|
|
300
|
+
'@jbrowse/core/util/featureTable': ['ColumnTable', 'DerivedTable', 'NO_COLUMN', 'SelectTable', 'SourceTable', 'TableRow', 'WithTable', 'asTable', 'numberReaderOf', 'readerOf', 'selectRows', 'throughIndex', 'valueAt', 'withColumns'],
|
|
301
|
+
'@jbrowse/core/util/featureTransforms': ['BIN_OVERLAP_FIELD', 'DEFAULT_BIN_AS', 'DEFAULT_BIN_FIELD', 'DEFAULT_CELLS_FIELD', 'DEFAULT_COVERAGE_AS', 'DEFAULT_FLATTEN_FIELD', 'DEFAULT_PILEUP_AS', 'DEFAULT_PILEUP_FIELDS', 'DEFAULT_WINDOW_FRAME', 'facetLayers', 'layerTables', 'matedBy', 'runTransforms'],
|
|
302
|
+
'@jbrowse/core/util/fetchContext': ['fanOutStatus', 'makeFetchContext'],
|
|
303
|
+
'@jbrowse/core/util/fetchHub': ['fetchHub', 'hubUrl'],
|
|
304
|
+
'@jbrowse/core/util/fetchPhases': [],
|
|
305
|
+
'@jbrowse/core/util/fieldReader': ['fieldReader', 'isPlainFieldRef'],
|
|
306
|
+
'@jbrowse/core/util/fileHandleStore': ['getFileHandle', 'isFileSystemAccessSupported', 'staleHandleIds', 'storeFileHandle', 'verifyPermission'],
|
|
307
|
+
'@jbrowse/core/util/FileSaver': ['saveAs'],
|
|
308
|
+
'@jbrowse/core/util/flatbush': ['default'],
|
|
309
|
+
'@jbrowse/core/util/formatFastaStrings': ['formatFastaLines', 'formatSeqFasta'],
|
|
310
|
+
'@jbrowse/core/util/frameCoalescer': ['createFrameCoalescer'],
|
|
311
|
+
'@jbrowse/core/util/freezeDeep': ['freezeDeep'],
|
|
312
|
+
'@jbrowse/core/util/geneticCodes': ['codonTable', 'defaultCodonTable', 'generateCodonTable', 'getGeneticCode', 'ncbiGeneticCodes', 'parseTranslExcept', 'parseTranslTable', 'relativizeTranslExcept'],
|
|
313
|
+
'@jbrowse/core/util/getRelativeX': ['getRelativeX'],
|
|
314
|
+
'@jbrowse/core/util/groupKeys': ['MAX_GROUPS', 'OVERFLOW_GROUP_KEY', 'capGroupKeys', 'carryGroupDomain', 'compareGroupKeys', 'groupKeyComparator', 'groupKeySpaceOf', 'overflowLabel', 'valueText'],
|
|
315
|
+
'@jbrowse/core/util/highlights': ['coerceHighlight', 'getHighlightColor', 'highlightKey', 'isSameHighlight'],
|
|
316
|
+
'@jbrowse/core/util/hooks': ['LGV_HEADER_HEIGHT_VAR', 'SCROLL_PORT_HEIGHT_VAR', 'VIEW_HEADER_HEIGHT_VAR', 'scrollPortOf', 'useChromeHeightVar', 'useCreateOnce', 'useCreateOnceAsync', 'useDebounce', 'useFinalUnmount', 'useFocusOnInteraction', 'useLocalStorage', 'useScrollPortHeightVar', 'useScrollPortOverflow', 'useSlowLoad', 'useStalled', 'useWidthSetter'],
|
|
317
|
+
'@jbrowse/core/util/htmlText': ['escapeHTML', 'looksLikeHTML'],
|
|
318
|
+
'@jbrowse/core/util/indexCandidates': ['detectIndexLocation', 'indexCandidateNames', 'indexSpellings', 'siblingLocation'],
|
|
319
|
+
'@jbrowse/core/util/installClearHoverOnSurfaceMove': ['installClearHoverOnSurfaceMove'],
|
|
320
|
+
'@jbrowse/core/util/installFetch': ['installFetch', 'runFetchOnce'],
|
|
321
|
+
'@jbrowse/core/util/installInitAutorun': ['installInitAutorun'],
|
|
322
|
+
'@jbrowse/core/util/installPrerequisiteFetch': ['installPrerequisiteFetch', 'isCurrentRead', 'readFor'],
|
|
323
|
+
'@jbrowse/core/util/io': ['CachedFilehandle', 'RemoteFileWithRangeCache', 'getFetcher', 'openLocation', 'openTabixIndexFilehandle', 'resolveUriLocation'],
|
|
324
|
+
'@jbrowse/core/util/io/RemoteFileWithRangeCache': ['CachedFilehandle', 'RemoteFileWithRangeCache', 'clearCache', 'clearCacheFor', 'sweepIdleCache'],
|
|
325
|
+
'@jbrowse/core/util/isDataCurrent': ['isDataCurrent'],
|
|
326
|
+
'@jbrowse/core/util/isoformRank': ['DEFAULT_CANONICAL_TRANSCRIPTS', 'featureIsoformReader', 'isCanonicalTranscriptsHost', 'isCodingIsoform', 'isoformScorer', 'rankIsoforms', 'serializedIsoformReader'],
|
|
327
|
+
'@jbrowse/core/util/isTextEntryFocused': ['isTextEntryFocused'],
|
|
328
|
+
'@jbrowse/core/util/jexl': ['default'],
|
|
329
|
+
'@jbrowse/core/util/jexlFilters': ['baseJexlFilters', 'configuredJexlFilters', 'jexlFilterNarrowing', 'retiredFilterState'],
|
|
330
|
+
'@jbrowse/core/util/jexlStrings': ['JEXL_PREFIX', 'ensureJexlPrefix', 'isJexl', 'stringToJexlExpression'],
|
|
331
|
+
'@jbrowse/core/util/layouts': ['GranularRectLayout', 'placeRect'],
|
|
332
|
+
'@jbrowse/core/util/layouts/GranularRectLayout': ['default'],
|
|
333
|
+
'@jbrowse/core/util/layouts/placeRect': ['placeRect'],
|
|
334
|
+
'@jbrowse/core/util/lazyAfterAttach': ['runLazyAfterAttach'],
|
|
335
|
+
'@jbrowse/core/util/lazyWithPreload': ['lazyWithPreload'],
|
|
336
|
+
'@jbrowse/core/util/leadingEdgeAutorun': ['leadingEdgeAutorun'],
|
|
337
|
+
'@jbrowse/core/util/legendCandidates': ['MAX_LEGEND_CANDIDATES', 'MAX_LEGEND_ENTRIES', 'createLegendCandidateCollector', 'derivedColorScale', 'everyRowPaints', 'unionLegendCandidates'],
|
|
338
|
+
'@jbrowse/core/util/librpc': ['RpcClient', 'RpcServer', 'deserializeError', 'isRpcResult', 'rpcResult', 'rpcResultWithArrayBuffers', 'serializeError', 'unwrapRpcResult'],
|
|
339
|
+
'@jbrowse/core/util/localStorage': ['localStorageAvailable', 'localStorageGetBoolean', 'localStorageGetItem', 'localStorageGetJSON', 'localStorageGetNumber', 'localStorageGetStringArray', 'localStorageRemoveItem', 'localStorageSetBoolean', 'localStorageSetItem', 'localStorageSetJSON', 'localStorageSetNumber', 'notifyLocalStorageKey', 'subscribeToLocalStorageKey'],
|
|
340
|
+
'@jbrowse/core/util/makeAssembly': ['assemblyNameFromUri', 'isSequenceUri', 'makeAssembly'],
|
|
341
|
+
'@jbrowse/core/util/markEncoding': ['COLOR_SCHEMES', 'DEFAULT_MARK_COLOR', 'DEFAULT_SIZE_RANGE_PX', 'MISCONFIGURED_ABGR', 'NO_VALUE_ABGR', 'NO_VALUE_LABEL', 'colorAt', 'colorEvaluator', 'continuousColorScale', 'encodeFeatures', 'encodedChannelTransferables', 'featureIndexAt', 'hitIndexOf', 'rampOverExtent', 'withHitIndex'],
|
|
342
|
+
'@jbrowse/core/util/measureText': ['measureText', 'measuredFont'],
|
|
343
|
+
'@jbrowse/core/util/mst-reflection': ['getEnumerationValues'],
|
|
344
|
+
'@jbrowse/core/util/mstUtils': ['canonicalizeViewRefName', 'findParentThat', 'findParentThatIs', 'getAssemblyHost', 'getContainingDisplay', 'getContainingTrack', 'getContainingView', 'getEnv', 'getRenderingServices', 'getRpcSessionId', 'getSession', 'hashCode', 'launchOrReplaceView', 'objectHash'],
|
|
345
|
+
'@jbrowse/core/util/nanoid': ['nanoid'],
|
|
346
|
+
'@jbrowse/core/util/numericUtils': ['avg', 'clamp', 'formatScore', 'getDisplayStr', 'getNumberGrouping', 'max', 'maxFinite', 'min', 'minmax', 'polarToCartesian', 'radToDeg', 'reducePrecision', 'setNumberGrouping', 'sum', 'toLocale', 'toPrecision'],
|
|
347
|
+
'@jbrowse/core/util/offscreenCanvasPonyfill': ['drawImageOntoCanvasContext'],
|
|
348
|
+
'@jbrowse/core/util/openViews': ['openTracks', 'openViews', 'viewAndNested'],
|
|
349
|
+
'@jbrowse/core/util/originCut': ['originHeadId', 'originTailId'],
|
|
350
|
+
'@jbrowse/core/util/paintLayer': ['PaintLayer'],
|
|
351
|
+
'@jbrowse/core/util/parseLineByLine': ['groupLinesByRef', 'makeFeatureIntervalTreeMap', 'parseLineByLine'],
|
|
352
|
+
'@jbrowse/core/util/preloadComponent': ['preloadComponent'],
|
|
353
|
+
'@jbrowse/core/util/pressOwner': ['isClaimedPress', 'isFromPortal'],
|
|
354
|
+
'@jbrowse/core/util/progress': ['aggregateStatus', 'createProgressReporter', 'createStatusFanOut', 'createStatusWindow', 'downloadStatus', 'phaseOf', 'progressLabel', 'statusFraction', 'statusMessageText', 'statusProgressLabel', 'statusReading', 'statusSource', 'throttleStatusEmits', 'updateStatus', 'withProgress'],
|
|
355
|
+
'@jbrowse/core/util/quantileExtent': ['DEFAULT_CLIP_QUANTILE', 'MIN_DOMAIN_QUANTILE', 'clipQuantileOf', 'fenceOutliers', 'finiteExtremes', 'quantileExtent', 'quantileOf', 'scaleExtent', 'selectNth'],
|
|
356
|
+
'@jbrowse/core/util/range': ['calculateRedispatchRange', 'doesIntersect2', 'intersection2'],
|
|
357
|
+
'@jbrowse/core/util/renderToStaticMarkup': ['renderToStaticMarkup'],
|
|
358
|
+
'@jbrowse/core/util/resolveRowHeight': ['resolveRowHeight'],
|
|
359
|
+
'@jbrowse/core/util/rowStackGeometry': ['contentYAt', 'rowCoordAt', 'rowIndexAt', 'rowSpanAt', 'rowsUnderPointer'],
|
|
360
|
+
'@jbrowse/core/util/rxjs': ['ObservableCreate', 'subscribeToObservable'],
|
|
361
|
+
'@jbrowse/core/util/sameStrings': ['sameOptionalStrings', 'sameStrings'],
|
|
362
|
+
'@jbrowse/core/util/samplesTsv': ['getSamplesTsvSources', 'parseSamplesTsv', 'samplesTsvAdapterConfigSchemaFields'],
|
|
363
|
+
'@jbrowse/core/util/selectEncodedFeature': ['selectEncodedFeature'],
|
|
364
|
+
'@jbrowse/core/util/setStackTraceLimit': ['setStackTraceLimit'],
|
|
365
|
+
'@jbrowse/core/util/shapeNameList': ['SHAPE_NAMES'],
|
|
366
|
+
'@jbrowse/core/util/shapeNames': ['SHAPE_CODES', 'SHAPE_NAMES'],
|
|
367
|
+
'@jbrowse/core/util/simpleFeature': ['buildJexlContext', 'default', 'isFeature', 'jexlFeatureProxy', 'unwrapFeature'],
|
|
368
|
+
'@jbrowse/core/util/starFusion': ['parseStarFusionBreakpoint', 'starFusionColumns'],
|
|
369
|
+
'@jbrowse/core/util/stats': ['blankStats', 'calcStdFromSums', 'rectifyStats', 'scoresToStats'],
|
|
370
|
+
'@jbrowse/core/util/stepOutputs': ['BIN_OVERLAP_FIELD', 'CELLS_FIELDS', 'DEFAULT_AGGREGATE_OP', 'DEFAULT_BIN_AS', 'DEFAULT_COVERAGE_AS', 'DEFAULT_FORMULA_AS', 'DEFAULT_PILEUP_AS', 'MATE_FIELDS', 'POSITION_FIELDS', 'STEP_OUTPUTS', 'aggregateFieldName', 'isRowwise', 'stepWrites', 'stepsOutput'],
|
|
371
|
+
'@jbrowse/core/util/svAlt': ['SV_MIN_LENGTH', 'SV_SYMBOLIC_ALLELES', 'breakendKeepsDirections', 'getBreakendMateLocString', 'isBreakend', 'junctionEnds', 'parseSvAlt', 'readTranslocationMate', 'safeParseBreakend', 'svClassOf', 'svClassOfAlt', 'svClassOfToken'],
|
|
372
|
+
'@jbrowse/core/util/SvgCanvas': ['SvgCanvas', 'withFreshSvgClipIds'],
|
|
373
|
+
'@jbrowse/core/util/svgColorProps': ['getFillProps', 'getStrokeProps', 'splitPaintAlpha', 'stripAlpha'],
|
|
374
|
+
'@jbrowse/core/util/systemColorScheme': ['darkReaderIsDark', 'onColorSchemeChange', 'onDarkReaderChange', 'prefersDarkColorScheme'],
|
|
375
|
+
'@jbrowse/core/util/tabix': ['readTabixHeaderLines', 'readTabixLines', 'readTabixLinesRedispatched'],
|
|
376
|
+
'@jbrowse/core/util/thresholdScale': ['NOT_A_NUMBER_LABEL', 'isMissing', 'numericDomain', 'rampGapScales', 'thresholdCuts', 'thresholdField', 'thresholdIndex', 'thresholdKeyEntries', 'thresholdLabels', 'thresholdPalette'],
|
|
377
|
+
'@jbrowse/core/util/tickLabels': ['MIN_TICK_LABELS_PER_BLOCK', 'dropLoneTickLabels', 'tickLabelsWorthDrawing'],
|
|
378
|
+
'@jbrowse/core/util/TimeTraveller': ['default'],
|
|
379
|
+
'@jbrowse/core/util/tracks': ['UNKNOWN', 'UNSUPPORTED', 'addAdapterGuesser', 'addTrackTypeGuesser', 'allSessionTracks', 'annotationTrackIds', 'canonicalAssemblyNames', 'clearFileFromCache', 'ensureFileHandleReady', 'expandLooseTrackConfig', 'filterTracks', 'findFileHandleIds', 'generateUnknownTrackConf', 'generateUnsupportedTrackConf', 'getBlob', 'getBlobMap', 'getConfAssemblyNames', 'getConfAssemblyNamesOrNone', 'getConfRpcSessionId', 'getFileFromCache', 'getFileName', 'getRpcSessionId', 'getTrackAssemblyNames', 'getTrackName', 'guessAdapter', 'guessTabixIndex', 'guessTrackConf', 'guessTrackConfForLocation', 'guessTrackType', 'hasFileHandlesInCache', 'hideTrackGeneric', 'isLooseTrackConfig', 'isSameAssemblyName', 'launchToggleTrackGeneric', 'launchTrackGeneric', 'makeIndex', 'makeIndexType', 'normalizeTrackInit', 'offeredTracks', 'openAssemblyInLinearView', 'openMateLabel', 'pickDisplayForView', 'restoreFileHandles', 'restoreFileHandlesFromSnapshot', 'setBlobMap', 'setFileInCache', 'showTrackGeneric', 'storeBlobLocation', 'storeFileHandleLocation', 'stripFileExtension', 'stripTrackIds', 'toTrackConfigEntry', 'toggleTrackGeneric', 'trackDisplayType', 'viewCanDisplayTrack', 'viewDisplayNames', 'warmTrackDisplayGeneric'],
|
|
380
|
+
'@jbrowse/core/util/translateTranscript': ['transcriptCDS', 'transcriptGeneticCodeId', 'transcriptTranslExcept', 'translateTranscript'],
|
|
381
|
+
'@jbrowse/core/util/tss-react': ['cx', 'keyframes', 'makeStyles'],
|
|
382
|
+
'@jbrowse/core/util/tss-react/types': [],
|
|
383
|
+
'@jbrowse/core/util/types': ['AuthNeededError', 'addOrReplaceView', 'canReplaceView', 'getEditableTrackConfigById', 'isAbstractMenuManager', 'isAppRootModel', 'isAuthNeededException', 'isBlobLocation', 'isDisplayModel', 'isFileHandleLocation', 'isLocalPathLocation', 'isRootModelWithInternetAccounts', 'isSelectionContainer', 'isSessionModel', 'isSessionModelWithConfigEditing', 'isSessionModelWithConnectionEditing', 'isSessionModelWithConnections', 'isSessionModelWithWidgets', 'isSessionServices', 'isSessionWithAddAssembly', 'isSessionWithAddSessionTrack', 'isSessionWithAddTracks', 'isSessionWithBaseTrackConfig', 'isSessionWithDeleteTrackConf', 'isSessionWithEditableTrackConfig', 'isSessionWithMultipleViews', 'isSessionWithPermanentPlugins', 'isSessionWithPublishTrackConf', 'isSessionWithSessionPlugins', 'isSessionWithSessionTracks', 'isSessionWithShareURL', 'isSessionWithViewReplacement', 'isTrackModel', 'isTrackViewModel', 'isUriLocation', 'isViewContainer', 'isViewModel'],
|
|
384
|
+
'@jbrowse/core/util/types/data': ['AuthNeededError', 'isAuthNeededException', 'isBlobLocation', 'isFileHandleLocation', 'isLocalPathLocation', 'isUriLocation'],
|
|
385
|
+
'@jbrowse/core/util/types/mst': ['BlobLocation', 'ElementId', 'FileHandleLocation', 'FileLocation', 'JexlExpressionString', 'LocalPathLocation', 'NoAssemblyRegion', 'Region', 'UriLocation', 'UriLocationRaw', 'createElementId', 'renameIds'],
|
|
386
|
+
'@jbrowse/core/util/unknownSnapshotKeys': ['displaySetterName', 'legacyInitMessage', 'reportLegacyInit', 'reportMalformedRows', 'reportUnknownKeys', 'setterOnlyMessage', 'unknownKeysMessage', 'viewLabel'],
|
|
387
|
+
'@jbrowse/core/util/unzip': ['unzip'],
|
|
388
|
+
'@jbrowse/core/util/useEventCallback': ['useEventCallback'],
|
|
389
|
+
'@jbrowse/core/util/useFetch': ['mutate', 'useFetch'],
|
|
390
|
+
'@jbrowse/core/util/useFetchPlugins': ['useFetchPlugins'],
|
|
391
|
+
'@jbrowse/core/util/useMeasure': ['default'],
|
|
392
|
+
'@jbrowse/core/util/usePanelVirtualScroll': ['usePanelVirtualScroll'],
|
|
393
|
+
'@jbrowse/core/util/usePanZoom': ['usePanZoom', 'useWheelZoom'],
|
|
394
|
+
'@jbrowse/core/util/usePointerDrag': ['usePointerDrag'],
|
|
395
|
+
'@jbrowse/core/util/useResizeDrag': ['useResizeDrag'],
|
|
396
|
+
'@jbrowse/core/util/useRowVirtualScroll': ['useRowVirtualScroll'],
|
|
397
|
+
'@jbrowse/core/util/viewHighlights': ['highlightsOnAssemblies'],
|
|
398
|
+
'@jbrowse/core/util/viewStatus': ['assemblyErrorMessage', 'computeViewStatus', 'viewLoading'],
|
|
399
|
+
'@jbrowse/core/util/virtualRange': ['virtualRange'],
|
|
400
|
+
'@jbrowse/core/util/wheelZoom': ['MAX_ZOOM_RATE_PER_MS', 'SCROLL_ZOOM_FACTOR_DIVISOR', 'ZOOM_ACTIVE_WINDOW_MS', 'accumulateScroll', 'applyZoomAccum', 'createWheelZoomController', 'getZoomNormalizer', 'isActivelyZooming', 'normalizeWheelDelta', 'wheelFrameElapsedMs', 'wheelZoomAccum'],
|
|
401
|
+
'@jbrowse/core/util/whenViewSettled': ['viewSettled', 'whenViewSettled', 'whenViewsSettled'],
|
|
402
|
+
'@jbrowse/core/util/withLaunchInput': ['defineLaunchKeys', 'isTrackRecipe', 'legacyInitMessage', 'pendingLaunch', 'snapshotSettings', 'unknownKeysMessage', 'withLaunchInput'],
|
|
403
|
+
'@jbrowse/display-kit/BlockMsg': ['default'],
|
|
404
|
+
'@jbrowse/display-kit/BottomRightIndicators': ['default'],
|
|
405
|
+
'@jbrowse/display-kit/ChromeHighlight': ['default'],
|
|
406
|
+
'@jbrowse/display-kit/ChromeLegend': ['default'],
|
|
407
|
+
'@jbrowse/display-kit/chromeOverlaySlots': ['BackgroundProgressSlot', 'ErrorBarSlot', 'LoadingSlot', 'TooLargeSlot'],
|
|
408
|
+
'@jbrowse/display-kit/coarseTier': ['coarseTierCovers', 'isSubAdapterConfig'],
|
|
409
|
+
'@jbrowse/display-kit/CoarseTierMixin': ['default'],
|
|
410
|
+
'@jbrowse/display-kit/coarseTierPhase': ['coarseTierDisplayPhase', 'coarseTierSvgReady'],
|
|
411
|
+
'@jbrowse/display-kit/colorByMenu': ['colorByMenuItem', 'colorFieldRows', 'colorSchemeMenuItem', 'solidColorItem'],
|
|
412
|
+
'@jbrowse/display-kit/colorConfigSchema': ['CATEGORICAL_COLOR_SCALES', 'CATEGORICAL_FIELD_PRESETS', 'COLOR_SCALES', 'DISCRETE_COLOR_SCALES', 'FEATURE_COLOR_SCALES', 'FEATURE_FIELD_PRESETS', 'IDENTITY_SCALE', 'categoricalColorField', 'colorChannelOptions', 'colorChannelSlots', 'colorConfigSchema', 'colorDescendingSlot', 'colorDomainEndsSlots', 'colorDomainQuantileSlot', 'colorDomainSlot', 'colorEncodingOf', 'colorFieldOf', 'colorForField', 'colorForValue', 'colorLabelsSlot', 'colorRampSlots', 'colorRangeSlot', 'colorReverseSlot', 'colorSettingOf', 'colorSnapshotOf', 'colorTitleSlot', 'colorUnknownSlot', 'dealRowColors', 'featureColorEncoding', 'identityKeyEntries', 'matrixColorEncodingOf', 'normalizeChannel', 'paintedColorEncoding', 'paintedScale', 'pairedColorsOf', 'presetOf', 'withPreset'],
|
|
413
|
+
'@jbrowse/display-kit/ColorWritesMixin': ['default', 'writtenColorOf'],
|
|
414
|
+
'@jbrowse/display-kit/ConfigProblemsIndicator': ['ConfigProblemsCorner', 'default'],
|
|
415
|
+
'@jbrowse/display-kit/configSchema': ['default', 'retiredBaseDisplaySpellings'],
|
|
416
|
+
'@jbrowse/display-kit/const': ['MIN_DISPLAY_HEIGHT'],
|
|
417
|
+
'@jbrowse/display-kit/ContextMenuMixin': ['ContextMenuMixin'],
|
|
418
|
+
'@jbrowse/display-kit/displayAutoruns': ['autorunOnReadyView', 'installAnimationDeadline', 'makeSettingsLoopGuard', 'onDisplayedRegionsChange'],
|
|
419
|
+
'@jbrowse/display-kit/DisplayBackgroundProgress': ['default'],
|
|
420
|
+
'@jbrowse/display-kit/DisplayChrome': ['default'],
|
|
421
|
+
'@jbrowse/display-kit/DisplayChromeBase': ['default'],
|
|
422
|
+
'@jbrowse/display-kit/DisplayContextMenu': ['DisplayContextMenu', 'isContextMenuHost', 'openContextMenuFromEvent'],
|
|
423
|
+
'@jbrowse/display-kit/DisplayErrorBar': ['default'],
|
|
424
|
+
'@jbrowse/display-kit/DisplayLoadingOverlay': ['default'],
|
|
425
|
+
'@jbrowse/display-kit/DisplayRenderErrorOverlay': ['default'],
|
|
426
|
+
'@jbrowse/display-kit/facetConfigSchema': ['facetConfigSchema', 'facetSettingOf'],
|
|
427
|
+
'@jbrowse/display-kit/fetchEachRegion': ['callEachRegion', 'fetchAllRegions', 'fetchEachRegion', 'fetchRegionsBatched'],
|
|
428
|
+
'@jbrowse/display-kit/fetchInputs': ['makeFetchInputs', 'makeSettingsFetchInputs', 'snapshotInputs'],
|
|
429
|
+
'@jbrowse/display-kit/FetchMixin': ['default', 'fetchMixinLifecycle', 'makeFetchContext'],
|
|
430
|
+
'@jbrowse/display-kit/floatingLabelHost': ['isFloatingLabelHost', 'isNamedFeatureHost'],
|
|
431
|
+
'@jbrowse/display-kit/foundationDisplayPhase': ['foundationDisplayPhase'],
|
|
432
|
+
'@jbrowse/display-kit/foundationPaintInert': ['foundationPaintInert'],
|
|
433
|
+
'@jbrowse/display-kit/foundationSvgReady': ['foundationSvgReady'],
|
|
434
|
+
'@jbrowse/display-kit/foundationView': ['containingHost', 'foundationCanRender', 'onTrackAssembly'],
|
|
435
|
+
'@jbrowse/display-kit/gateCommit': ['measurementOf', 'measurementOfEach', 'openGateCommit'],
|
|
436
|
+
'@jbrowse/display-kit/GlobalFetchMixin': ['blockKeySignature', 'default'],
|
|
437
|
+
'@jbrowse/display-kit/groupByMenu': ['groupByRadioMenuItem', 'hiddenGroupsItems', 'mergeDomain', 'moveSectionTo', 'resetOrderItem', 'sectionOrderMenuItems', 'sectionRowMenuItems', 'showHiddenItems'],
|
|
438
|
+
'@jbrowse/display-kit/GroupLabelBox': ['GroupLabelBoxes', 'default'],
|
|
439
|
+
'@jbrowse/display-kit/GroupLabelChips': ['GroupLabelChips'],
|
|
440
|
+
'@jbrowse/display-kit/groupLabelChipStyles': ['useGroupLabelStyles'],
|
|
441
|
+
'@jbrowse/display-kit/groupLabelStyle': ['GROUP_LABEL_FONT_SIZE', 'GROUP_LABEL_FONT_WEIGHT', 'GROUP_LABEL_HEIGHT', 'GROUP_LABEL_ICON_SIZE', 'GROUP_LABEL_INSET_X', 'GROUP_LABEL_PADDING_X', 'GROUP_LABEL_RADIUS', 'GROUP_LABEL_TINT', 'groupChipTop', 'groupSectionLabel', 'sectionKey'],
|
|
442
|
+
'@jbrowse/display-kit/heightMode': ['GROW_MAX_HEIGHT', 'HEIGHT_MODE_VALUES', 'getHeightModeOptions', 'heightModeLabel'],
|
|
443
|
+
'@jbrowse/display-kit/heightModeConfigSchemaFields': ['heightModeConfigSchemaFields'],
|
|
444
|
+
'@jbrowse/display-kit/heightModeMenu': ['heightModeMenuItems'],
|
|
445
|
+
'@jbrowse/display-kit/HeightModeMixin': ['default', 'installGrowExitBake'],
|
|
446
|
+
'@jbrowse/display-kit/heldColorSlots': ['heldColorSlots'],
|
|
447
|
+
'@jbrowse/display-kit/HiddenGroupsMixin': ['NO_HIDDEN_GROUPS', 'default'],
|
|
448
|
+
'@jbrowse/display-kit/highlightHost': ['isHighlightHost', 'isPinnedInkHost', 'mergeBounds'],
|
|
449
|
+
'@jbrowse/display-kit/installClearHoverOnViewportChange': ['installClearHoverOnViewportChange'],
|
|
450
|
+
'@jbrowse/display-kit/installGlobalFetchAutorun': ['installGlobalFetchAutorun'],
|
|
451
|
+
'@jbrowse/display-kit/installPerRegionFetchAutoruns': ['installPerRegionFetchAutoruns'],
|
|
452
|
+
'@jbrowse/display-kit/jexlFilterConfigSchemaFields': ['jexlFilterConfigSchemaFields', 'retiredFilterSpelling'],
|
|
453
|
+
'@jbrowse/display-kit/KeyedFetchMixin': ['default'],
|
|
454
|
+
'@jbrowse/display-kit/legendHost': ['isLegendHost'],
|
|
455
|
+
'@jbrowse/display-kit/LegendMixin': ['default', 'legendCheckboxItem', 'legendMixinSlots'],
|
|
456
|
+
'@jbrowse/display-kit/MarkSvgLayer': ['default'],
|
|
457
|
+
'@jbrowse/display-kit/MultiRegionDisplayMixin': ['MAX_STORED_REGIONS', 'default'],
|
|
458
|
+
'@jbrowse/display-kit/planRegionFetch': ['isBlockCovered', 'planRegionFetch', 'regionAssemblyMismatchMessage', 'retryOutcomeForPlan'],
|
|
459
|
+
'@jbrowse/display-kit/PlotDialog': ['default'],
|
|
460
|
+
'@jbrowse/display-kit/plotMenu': ['editPlotMenuItems', 'openPlotDialog'],
|
|
461
|
+
'@jbrowse/display-kit/regionCommit': ['makeCommitChecks', 'payloadServesZoom'],
|
|
462
|
+
'@jbrowse/display-kit/regionHost': ['contentRightEdgePx'],
|
|
463
|
+
'@jbrowse/display-kit/regionTooLargeConfigSchemaFields': ['regionTooLargeConfigSchemaFields'],
|
|
464
|
+
'@jbrowse/display-kit/RegionTooLargeMixin': ['default'],
|
|
465
|
+
'@jbrowse/display-kit/regionTooLargeUtils': ['AUTO_FORCE_LOAD_BP', 'BASE_FETCH_SIZE_LIMIT', 'SUB_FLOOR_BYTE_BUDGET_FACTOR', 'TOO_MANY_FEATURES_REASON', 'bytesTooLargeReason', 'evaluateRegionTooLarge', 'heldDataAnswers', 'nextByteEstimate', 'nextGateState', 'resolveByteLimit'],
|
|
466
|
+
'@jbrowse/display-kit/renderDisplaySvg': ['SvgLegend', 'SvgPinnedHighlight', 'SvgYAxis', 'renderDisplaySvg', 'svgLegendGutterWidth'],
|
|
467
|
+
'@jbrowse/display-kit/retiredSettings': ['RETIRED_ROW_STATE_KEYS', 'liftRetiredRowState', 'moveDisplayDefaults'],
|
|
468
|
+
'@jbrowse/display-kit/rowArrangementConfigSchema': ['ROW_ARRANGEMENT_MEMBERS', 'rowArrangementConfigSchema'],
|
|
469
|
+
'@jbrowse/display-kit/rowColorConfigSchema': ['rowColorConfigSchema'],
|
|
470
|
+
'@jbrowse/display-kit/rowsConfigSchema': ['rowsConfigSchema', 'rowsSettingOf'],
|
|
471
|
+
'@jbrowse/display-kit/rpcArgs': ['rpcArgs'],
|
|
472
|
+
'@jbrowse/display-kit/sampleRowsConfigSchema': ['sampleRowsConfigSchema'],
|
|
473
|
+
'@jbrowse/display-kit/sectionFacetConfigSchema': ['sectionFacetConfigSchema'],
|
|
474
|
+
'@jbrowse/display-kit/SkippedFeaturesIndicator': ['default', 'skippedFeatures'],
|
|
475
|
+
'@jbrowse/display-kit/SolidColorDialog': ['default'],
|
|
476
|
+
'@jbrowse/display-kit/stableIdentityComputed': ['sameAsLast', 'stableIdentityComputed'],
|
|
477
|
+
'@jbrowse/display-kit/StoredHoverMixin': ['default'],
|
|
478
|
+
'@jbrowse/display-kit/subPixelBinBp': ['MIN_BINNED_BP_PER_PX', 'subPixelBinBp'],
|
|
479
|
+
'@jbrowse/display-kit/TooLargeMessage': ['default'],
|
|
480
|
+
'@jbrowse/display-kit/TrackControl': ['default'],
|
|
481
|
+
'@jbrowse/display-kit/trackHeightConfigSchemaFields': ['trackHeightConfigSchemaFields'],
|
|
482
|
+
'@jbrowse/display-kit/TrackHeightIndicator': ['default'],
|
|
483
|
+
'@jbrowse/display-kit/TrackHeightMixin': ['default'],
|
|
484
|
+
'@jbrowse/display-kit/TriangleMatrixMixin': ['default', 'squashToHeightCheckboxItem', 'triangleMatrixConfigSchemaFields'],
|
|
485
|
+
'@jbrowse/display-kit/TriangleMatrixSvgLayer': ['default'],
|
|
486
|
+
'@jbrowse/display-kit/triangleTransform': ['computeTriangleYScalar', 'enterTriangleCellSpace', 'triangleAxis', 'triangleDataToScreen', 'triangleScreenToData', 'triangleViewTransform'],
|
|
487
|
+
'@jbrowse/display-kit/types': ['VIEW_TRACK_LABEL_MODES'],
|
|
488
|
+
'@jbrowse/display-kit/viewportEmpty': ['viewportEmpty'],
|
|
489
|
+
'@jbrowse/display-kit/viewRegionTable': ['viewRegionTable'],
|
|
490
|
+
'@jbrowse/display-ui': ['AXIS_GUTTER_WIDTH_PX', 'AXIS_RIGHT_INSET_PX', 'AxisCaption', 'AxisCaptionOverlay', 'AxisGutter', 'BOTTOM_RIGHT_CONTROLS_ORDER', 'BottomRightCornerContext', 'COMPACT_AXIS_HEIGHT', 'CrossHatchLines', 'CrossHatches', 'DEFAULT_RULE_COLOR', 'DisplayChromeOverlayProvider', 'DisplayUIProvider', 'FLOATING_LEGEND_RIGHT_PX', 'FLOATING_LEGEND_TOP_PX', 'FloatingLegend', 'FloatingSvgOverlay', 'FloatingText', 'PointerLayer', 'SCORE_CAPTION_HEIGHT', 'ScoreDomainCaption', 'ScoreRuleLines', 'ScoreRules', 'SvgHaloText', 'TEXT_BASELINE_RATIO', 'Tooltip', 'TrackControlProvider', 'TrackOverlayContext', 'TrackOverlayPortal', 'TrackOverlaySlot', 'YSCALEBAR_LABEL_OFFSET', 'YScaleBar', 'YScaleBarOverlay', 'axisDrawn', 'axisGutterLeft', 'axisGutterWidth', 'axisPlotBox', 'clampStrokeInsideAxis', 'cullOverlappingLabels', 'formatScore', 'isLiveModel', 'leftAxisGutterWidth', 'plainChromeOverlays', 'plainTrackControl', 'resolveOverlays', 'scoreToAxisY', 'textHalo', 'tooLargeBannerText', 'useChromeOverlayOverride', 'useTooltip', 'useTrackControlMenu', 'useTrackControlOverride'],
|
|
491
|
+
'@jbrowse/display-ui/axisPlacement': ['AXIS_RIGHT_INSET_PX', 'COMPACT_AXIS_HEIGHT', 'axisCaptionY', 'axisDrawn', 'axisGutterLeft', 'axisGutterWidth', 'leftAxisGutterWidth', 'numbersGrowRight', 'rulesABand'],
|
|
492
|
+
'@jbrowse/display-ui/embed': ['EmbedProvider', 'EngineBoundary', 'Highlights', 'Legend', 'LocationBox', 'NavButton', 'Notifications', 'RegionSeams', 'ResizeHandle', 'Scalebar', 'SearchPicker', 'Toolbar', 'Track', 'TrackStack', 'TrackToggle', 'ViewStatus', 'useLocationBox'],
|
|
493
|
+
'@jbrowse/display-ui/yAxisConstants': ['AXIS_FONT_PX', 'CAPTION_BAND_PX', 'CAPTION_INSET_PX', 'DEFAULT_RULE_COLOR', 'SCORE_CAPTION_HEIGHT', 'TICK_LABEL_X_PX', 'YSCALEBAR_LABEL_OFFSET'],
|
|
494
|
+
'@jbrowse/display-ui/yScaleTicks': ['AXIS_GUTTER_WIDTH_PX', 'axisPlotBox', 'clampStrokeInsideAxis', 'scoreToAxisY'],
|
|
495
|
+
'@jbrowse/render-core/blockClipUtils': ['bpRangeXTuple', 'clipBlock', 'splitPositionWithFrac', 'writeBpRangeUniforms'],
|
|
496
|
+
'@jbrowse/render-core/canvas2dUtils': ['CANVAS_SEAM_PX', 'CappedPath', 'MAX_CANVAS_DIM_PX', 'MAX_DPR', 'bpAtPx', 'bpAtPxExact', 'bpProjection', 'clampBlockScissor', 'clipBlockForCanvas', 'devicePxBand', 'devicePxSpan', 'fillBpSpan', 'forEachClippedBlock', 'getDpr', 'getPreparedCanvas2D', 'makeBpMapper', 'makeCellLeftMapper', 'makeRampFillStyleLut', 'maxCanvasCssPx', 'prepareCanvas', 'projectBp', 'pxPerBpOf', 'regionAtPixel', 'spanLeft', 'spanRect', 'strokeRectInside', 'syncCanvasSize', 'withClip'],
|
|
497
|
+
'@jbrowse/render-core/canvasContext': ['acquireCanvas2D', 'acquiredCanvasContext', 'canvasConfiguredBy', 'canvasContextError', 'noteCanvasConfigured', 'noteCanvasContext'],
|
|
498
|
+
'@jbrowse/render-core/colorRampLut': ['COLOR_RAMP_LUT_ENTRIES', 'uploadColorRampLut'],
|
|
499
|
+
'@jbrowse/render-core/computePipeline': ['makeComputePipelineCache'],
|
|
500
|
+
'@jbrowse/render-core/contractReports': ['contractReportsOn', 'enableContractReports', 'reportContractViolation', 'setContractReportSink'],
|
|
501
|
+
'@jbrowse/render-core/coverageBand': ['COVERAGE_BAND_LAYER_ORDER', 'COVERAGE_BAND_UNIFORMS_SIZE_BYTES', 'COVERAGE_BAR_PASS', 'COVERAGE_CLIP_PASS', 'COVERAGE_INTERBASE_PASS', 'COVERAGE_MOD_PASS', 'COVERAGE_SNP_PASS', 'orderCoverageBandLayers', 'writeCoverageBandUniforms'],
|
|
502
|
+
'@jbrowse/render-core/coverageBandBuffers': [],
|
|
503
|
+
'@jbrowse/render-core/createRenderingBackend': ['createCanvas2DBackend', 'createRenderingBackend', 'deriveSampleCount'],
|
|
504
|
+
'@jbrowse/render-core/displayPhase': ['computeActivityPhase', 'computeDisplayPhase', 'computeDisplayStatusPhase'],
|
|
505
|
+
'@jbrowse/render-core/encodeMemo': ['createEncodeMemo'],
|
|
506
|
+
'@jbrowse/render-core/gpuDevice': ['GPU_OVERRIDES', 'getBuiltRenderer', 'getGpuDevice', 'getGpuOverride', 'isGpuRenderingDisabled', 'onDeviceLost', 'requestFirstAdapter', 'resetGpuDeviceForTests', 'setBuiltRenderer', 'setGpuOverride'],
|
|
507
|
+
'@jbrowse/render-core/graphicsCapabilities': ['effectiveRenderer', 'getGraphicsCapabilities', 'isSoftwareRenderer', 'prewarmGraphics'],
|
|
508
|
+
'@jbrowse/render-core/hal': ['MOCK_SHADER_SOURCE', 'MockHal', 'WebGL2Hal', 'WebGPUHal', 'assertUniquePassIds', 'createGpuHal'],
|
|
509
|
+
'@jbrowse/render-core/installUpload': ['installUpload', 'oneCell'],
|
|
510
|
+
'@jbrowse/render-core/instanceCache': ['createInstanceCache'],
|
|
511
|
+
'@jbrowse/render-core/instancePass': ['uploadPass'],
|
|
512
|
+
'@jbrowse/render-core/linkFeet': ['LINK_FOOT_FORWARD', 'LINK_FOOT_REVERSE', 'linkFeet'],
|
|
513
|
+
'@jbrowse/render-core/marks': ['BandPen', 'CONNECTOR_ARROW', 'CONNECTOR_BOW', 'CONNECTOR_DASHED', 'CONNECTOR_LEADING_2', 'CONNECTOR_MAX_REACH_PX', 'CONNECTOR_MINUS_1', 'CONNECTOR_MINUS_2', 'CONNECTOR_STRAIGHT', 'HIDDEN_ROW', 'LINK_ELSEWHERE', 'LINK_NO_REGION', 'NO_ROW_COLOR', 'RAMP_NOT_A_NUMBER_COLOR', 'RAMP_NO_VALUE_BITS', 'RAMP_NO_VALUE_COLOR', 'RowKeys', 'abgrToCssRgba', 'appendGlyph', 'backToFront', 'barMark', 'buildRowTable', 'connectorEnds', 'connectorMark', 'defineMark', 'ellipseDistance', 'ellipseNearest', 'inkOfInstances', 'instanceColor', 'isThreshold', 'keepRampValues', 'keySlot', 'lineCenterMark', 'lineMarkOf', 'lineStepMark', 'linkApex', 'linkFeet', 'linkInstance', 'linkLabelAnchor', 'linkMark', 'makeAbgrFill', 'nearestMarkHit', 'paintColors', 'paintMarkBlocks', 'planMarks', 'pointInsetPx', 'pointInstance', 'pointMark', 'rampUniforms', 'rampValueBits', 'recordPath', 'rowColor', 'rowSlot', 'rowSpanIndex', 'rowTableKeys', 'rowTableTextures', 'ruleMark', 'shiftInk', 'spanMark', 'spansInRow', 'thresholdBandOf', 'valueWindow', 'withPassId'],
|
|
514
|
+
'@jbrowse/render-core/marks/backend': ['Canvas2DMarkBackend', 'GpuMarkBackend', 'MarkTextureBinder', 'createMarkBackend', 'drawMarks', 'drawPlannedPasses', 'uploadMarks'],
|
|
515
|
+
'@jbrowse/render-core/marks/colorFill': ['abgrToCssRgba', 'makeAbgrFill'],
|
|
516
|
+
'@jbrowse/render-core/marks/drawAgainstHit': ['inkViolations', 'recordingContext', 'sweepMarkAgainstHit'],
|
|
517
|
+
'@jbrowse/render-core/marks/ellipseDistance': ['ellipseDistance', 'ellipseNearest'],
|
|
518
|
+
'@jbrowse/render-core/marks/glyphPaint': ['appendGlyph', 'glyphBox', 'pointInsetPx'],
|
|
519
|
+
'@jbrowse/render-core/marks/hit': ['inkAtPoint', 'inkHitNearest', 'inkOnRect', 'nearestInk', 'shapeHitNearest'],
|
|
520
|
+
'@jbrowse/render-core/namedReactions': ['namedAutorun', 'reactionDependencies', 'recordNamedReaction'],
|
|
521
|
+
'@jbrowse/render-core/OverlayCanvas': ['default'],
|
|
522
|
+
'@jbrowse/render-core/perRegionRenderingBackend': ['Canvas2DPerRegionRenderingBackend', 'GpuPerRegionRenderingBackend'],
|
|
523
|
+
'@jbrowse/render-core/regionDataMap': ['isCheckedAtTheStore', 'regionDataMap'],
|
|
524
|
+
'@jbrowse/render-core/renderBlock': ['buildRenderBlocks', 'canvasWideBlock', 'canvasWideBlocks'],
|
|
525
|
+
'@jbrowse/render-core/RenderCanvas': ['default'],
|
|
526
|
+
'@jbrowse/render-core/renderingBackendBase': ['Canvas2DRenderingBackendBase', 'GpuRenderingBackendBase'],
|
|
527
|
+
'@jbrowse/render-core/RenderLifecycleMixin': ['RenderLifecycleMixin'],
|
|
528
|
+
'@jbrowse/render-core/scoreScale': ['SCALE_TYPE_LINEAR', 'SCALE_TYPE_LOG', 'SCALE_TYPE_SYMLOG', 'denormalizeScore', 'makeScoreNormalizer', 'rampMidNorm', 'scaleTypeCode'],
|
|
529
|
+
'@jbrowse/render-core/ScrollLockedOverlay': ['ScrollLockedOverlay'],
|
|
530
|
+
'@jbrowse/render-core/shaders/antialias': ['aaHalfPx', 'aaPx', 'aaRamp', 'edgeCoverage'],
|
|
531
|
+
'@jbrowse/render-core/shaders/barMarkIface': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'TEXTURES', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_SLOT_ARRAYS', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColor', 'getInstanceRow', 'getInstanceX', 'getInstanceX2', 'getInstanceY', 'packInstances', 'setInstanceColor', 'setInstanceRow', 'setInstanceX', 'setInstanceX2', 'setInstanceY', 'setUniformColorBands', 'setUniformColorCuts', 'writeUniforms'],
|
|
532
|
+
'@jbrowse/render-core/shaders/capsule': ['capsuleDistPx'],
|
|
533
|
+
'@jbrowse/render-core/shaders/capsuleConsts': ['CAPSULE_MIN_LEN_PX'],
|
|
534
|
+
'@jbrowse/render-core/shaders/clipStrip': ['clipSide'],
|
|
535
|
+
'@jbrowse/render-core/shaders/clipStripConsts': ['CLIP_STRIP_COLOR', 'CLIP_STRIP_PX'],
|
|
536
|
+
'@jbrowse/render-core/shaders/colorRampLut': ['rampMidT'],
|
|
537
|
+
'@jbrowse/render-core/shaders/connectorMark': ['connectorBudgetPx', 'connectorHandlePx', 'connectorLiftPx', 'connectorStrokePx', 'connectorTangent'],
|
|
538
|
+
'@jbrowse/render-core/shaders/connectorMarkConsts': ['CONNECTOR_APEX_RATIO', 'CONNECTOR_ARROW', 'CONNECTOR_BOW', 'CONNECTOR_CURVE_SEGMENTS', 'CONNECTOR_DASHED', 'CONNECTOR_LEADING_2', 'CONNECTOR_MAX_HANDLE_PX', 'CONNECTOR_MAX_REACH_PX', 'CONNECTOR_MINUS_1', 'CONNECTOR_MINUS_2', 'CONNECTOR_STRAIGHT'],
|
|
539
|
+
'@jbrowse/render-core/shaders/coverageBar': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'SOURCE', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_OFFSET_U32', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstancePosition', 'getInstanceRelDepth', 'packInstances', 'setInstancePosition', 'setInstanceRelDepth', 'writeUniforms'],
|
|
540
|
+
'@jbrowse/render-core/shaders/coverageInterbase': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'SOURCE', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_OFFSET_U32', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColorType', 'getInstancePosition', 'getInstanceSegHeight', 'getInstanceYOffset', 'packInstances', 'setInstanceColorType', 'setInstancePosition', 'setInstanceSegHeight', 'setInstanceYOffset', 'writeUniforms'],
|
|
541
|
+
'@jbrowse/render-core/shaders/coverageMod': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'SOURCE', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_OFFSET_U32', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstancePackedColor', 'getInstancePosition', 'getInstanceRelDepth', 'getInstanceSegHeight', 'getInstanceYOffset', 'packInstances', 'setInstancePackedColor', 'setInstancePosition', 'setInstanceRelDepth', 'setInstanceSegHeight', 'setInstanceYOffset', 'writeUniforms'],
|
|
542
|
+
'@jbrowse/render-core/shaders/coverageSnp': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'SOURCE', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_OFFSET_U32', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColorType', 'getInstancePosition', 'getInstanceRelDepth', 'getInstanceSegHeight', 'getInstanceYOffset', 'packInstances', 'setInstanceColorType', 'setInstancePosition', 'setInstanceRelDepth', 'setInstanceSegHeight', 'setInstanceYOffset', 'writeUniforms'],
|
|
543
|
+
'@jbrowse/render-core/shaders/curveDistance': ['distToWideCirclePx', 'ellipseHullPoint', 'farDomeDistancePx', 'farDomeHullPoint', 'farDomeParam', 'legSweepAngle', 'wideCircleHullPoint', 'wideCircleLeg', 'wideCircleLegStep'],
|
|
544
|
+
'@jbrowse/render-core/shaders/hpmath': ['extendToMinWidthPx', 'snapBoxCenterYPx', 'snapBoxHeightPx', 'snapBoxTopPx'],
|
|
545
|
+
'@jbrowse/render-core/shaders/lineCenterMarkIface': ['BINDINGS', 'BLEND_STATE', 'COVERAGE', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'TEXTURES', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_SLOT_ARRAYS', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColor', 'getInstancePrevX', 'getInstancePrevX2', 'getInstancePrevY', 'getInstanceRow', 'getInstanceX', 'getInstanceX2', 'getInstanceY', 'packInstances', 'setInstanceColor', 'setInstancePrevX', 'setInstancePrevX2', 'setInstancePrevY', 'setInstanceRow', 'setInstanceX', 'setInstanceX2', 'setInstanceY', 'setUniformColorBands', 'setUniformColorCuts', 'writeUniforms'],
|
|
546
|
+
'@jbrowse/render-core/shaders/lineCommonConsts': ['GAP_Y', 'NO_PREV_X'],
|
|
547
|
+
'@jbrowse/render-core/shaders/lineStepMarkIface': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'TEXTURES', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_SLOT_ARRAYS', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColor', 'getInstanceNextY', 'getInstancePrevY', 'getInstanceRow', 'getInstanceX', 'getInstanceX2', 'getInstanceY', 'packInstances', 'setInstanceColor', 'setInstanceNextY', 'setInstancePrevY', 'setInstanceRow', 'setInstanceX', 'setInstanceX2', 'setInstanceY', 'setUniformColorBands', 'setUniformColorCuts', 'writeUniforms'],
|
|
548
|
+
'@jbrowse/render-core/shaders/linkMark': ['linkApexHeld', 'linkApexPx', 'linkBaseYPx', 'linkFootDir', 'linkFootLenPx', 'linkIsFar', 'linkRadiiPx', 'linkStrokeWidthPx', 'linkValuePx'],
|
|
549
|
+
'@jbrowse/render-core/shaders/linkMarkConsts': ['LINK_CURVE_SEGMENTS', 'LINK_ELSEWHERE', 'LINK_FAR_FLAT_RATIO', 'LINK_FAR_SCREEN_WIDTHS', 'LINK_FOOT_PX', 'LINK_LINE_MIN_PX', 'LINK_MAX_REGIONS', 'LINK_NO_REGION', 'LINK_NO_SIZE', 'LINK_SHAPE_ARC', 'LINK_SHAPE_DOME', 'LINK_SHAPE_LINE', 'LINK_SIZE_CONSTANT', 'LINK_SIZE_SCALED', 'LINK_STEM_PX'],
|
|
550
|
+
'@jbrowse/render-core/shaders/markColorConsts': ['MAX_COLOR_BANDS', 'MAX_COLOR_CUTS', 'RAMP_LINEAR', 'RAMP_LOG', 'RAMP_NONE', 'RAMP_NOT_A_NUMBER_COLOR', 'RAMP_NO_VALUE_BITS', 'RAMP_NO_VALUE_COLOR', 'RAMP_THRESHOLD'],
|
|
551
|
+
'@jbrowse/render-core/shaders/pointGlyph': ['crispSquareTopLeftPx', 'discExpand', 'glyphExpand'],
|
|
552
|
+
'@jbrowse/render-core/shaders/pointGlyphConsts': ['SMALL_POINT_MAX_DIAMETER'],
|
|
553
|
+
'@jbrowse/render-core/shaders/pointMark': ['pointRowYPx', 'pointYPx', 'valueToYPxScaled'],
|
|
554
|
+
'@jbrowse/render-core/shaders/pointMarkConsts': ['DIAMOND_GLYPH_SCALE', 'DIAMOND_MITER_REACHES', 'GLYPH_DIAMOND', 'GLYPH_DISC', 'GLYPH_SQUARE', 'GLYPH_TRIANGLE', 'TRIANGLE_MITER_REACHES'],
|
|
555
|
+
'@jbrowse/render-core/shaders/pointMarkIface': ['BINDINGS', 'INSTANCE_OFFSET_F32', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'TEXTURES', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_SLOT_ARRAYS', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColor', 'getInstanceGlyph', 'getInstanceRow', 'getInstanceX', 'getInstanceX2', 'getInstanceY', 'packInstances', 'setInstanceColor', 'setInstanceGlyph', 'setInstanceRow', 'setInstanceX', 'setInstanceX2', 'setInstanceY', 'setUniformColorBands', 'setUniformColorCuts', 'writeUniforms'],
|
|
556
|
+
'@jbrowse/render-core/shaders/rowRect': ['drawnRowHeightPx', 'rowBandOffsetPx'],
|
|
557
|
+
'@jbrowse/render-core/shaders/rowRectConsts': ['MIN_DRAWN_ROW_PX', 'MULTI_ROW_MIN_CELL_PX'],
|
|
558
|
+
'@jbrowse/render-core/shaders/scoreScale': ['normalizeScore', 'normalizeScoreUnclamped'],
|
|
559
|
+
'@jbrowse/render-core/shaders/spanMarkIface': ['BINDINGS', 'INSTANCE_OFFSET_U32', 'INSTANCE_STRIDE_BYTES', 'INSTANCE_STRIDE_WORDS', 'InstanceWriter', 'TEXTURES', 'UNIFORMS_SIZE_BYTES', 'UNIFORM_OFFSET_F32', 'UNIFORM_OFFSET_I32', 'UNIFORM_SLOT_ARRAYS', 'VERTEX_ATTRIBUTES', 'VERTS_PER_INSTANCE', 'getInstanceColor', 'getInstanceRow', 'getInstanceX', 'getInstanceX2', 'packInstances', 'setInstanceColor', 'setInstanceRow', 'setInstanceX', 'setInstanceX2', 'setUniformColorBands', 'setUniformColorCuts', 'writeUniforms'],
|
|
560
|
+
'@jbrowse/render-core/sharedBackendKey': ['sharedBackendKey'],
|
|
561
|
+
'@jbrowse/render-core/slangPass': ['slangPass'],
|
|
562
|
+
'@jbrowse/render-core/useGraphicsCapabilities': ['useGraphicsCapabilities'],
|
|
563
|
+
'@jbrowse/render-core/useRenderingBackend': ['CONTEXT_LOST_REPORT_GRACE_MS', 'OFFSCREEN_RELEASE_BAND', 'createGpuContextLostError', 'createGpuDeviceLostError', 'createGpuSurfaceLostError', 'isGpuContextLostError', 'useRenderingBackend'],
|
|
564
|
+
'@jbrowse/render-core/useTabVisibilityRerender': ['useTabVisibilityRerender'],
|
|
565
|
+
};
|
|
566
|
+
export default names;
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