@jbrowse/core 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
- package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
- package/esm/BaseFeatureWidget/configSchema.js +3 -0
- package/esm/BaseFeatureWidget/index.d.ts +2 -0
- package/esm/BaseFeatureWidget/index.js +2 -0
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
- package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
- package/esm/BaseFeatureWidget/types.d.ts +22 -0
- package/esm/BaseFeatureWidget/types.js +1 -0
- package/esm/BaseFeatureWidget/util.d.ts +51 -0
- package/esm/BaseFeatureWidget/util.js +95 -0
- package/esm/CorePlugin.d.ts +6 -0
- package/esm/CorePlugin.js +24 -0
- package/esm/PhasedScheduler.js +25 -0
- package/esm/Plugin.d.ts +13 -0
- package/esm/Plugin.js +9 -0
- package/esm/PluginLoader.d.ts +64 -0
- package/esm/PluginLoader.js +164 -0
- package/esm/PluginManager.d.ts +125 -0
- package/esm/PluginManager.js +414 -0
- package/esm/ReExports/BaseFeatureDetails.js +9 -0
- package/esm/ReExports/DataGrid.js +1 -0
- package/esm/ReExports/MuiDataGridReExports.js +131 -0
- package/esm/ReExports/MuiReExports.d.ts +134 -0
- package/esm/ReExports/MuiReExports.js +115 -0
- package/esm/ReExports/index.d.ts +1 -0
- package/esm/ReExports/index.js +1 -0
- package/esm/ReExports/lazify.js +10 -0
- package/esm/ReExports/list.js +275 -0
- package/esm/ReExports/modules.js +149 -0
- package/esm/TextSearch/BaseResults.d.ts +46 -0
- package/esm/TextSearch/BaseResults.js +67 -0
- package/esm/TextSearch/TextSearchManager.d.ts +48 -0
- package/esm/TextSearch/TextSearchManager.js +77 -0
- package/esm/assemblyManager/assembly.d.ts +75 -0
- package/esm/assemblyManager/assembly.js +328 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
- package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
- package/esm/assemblyManager/assemblyManager.d.ts +528 -0
- package/esm/assemblyManager/assemblyManager.js +131 -0
- package/esm/assemblyManager/index.d.ts +3 -0
- package/esm/assemblyManager/index.js +2 -0
- package/esm/configuration/configurationSchema.d.ts +37 -0
- package/esm/configuration/configurationSchema.js +230 -0
- package/esm/configuration/configurationSlot.d.ts +33 -0
- package/esm/configuration/configurationSlot.js +239 -0
- package/esm/configuration/index.d.ts +3 -0
- package/esm/configuration/index.js +2 -0
- package/esm/configuration/types.d.ts +14 -0
- package/esm/configuration/types.js +1 -0
- package/esm/configuration/util.d.ts +10 -0
- package/esm/configuration/util.js +123 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
- package/esm/data_adapters/BaseAdapter/index.js +5 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/stats.js +48 -0
- package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
- package/esm/data_adapters/BaseAdapter/util.js +15 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
- package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
- package/esm/data_adapters/CytobandAdapter/index.js +12 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
- package/esm/data_adapters/dataAdapterCache.js +54 -0
- package/esm/data_adapters/util.js +4 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
- package/esm/pluggableElementTypes/AdapterType.js +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
- package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
- package/esm/pluggableElementTypes/ConnectionType.js +16 -0
- package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
- package/esm/pluggableElementTypes/DisplayType.js +20 -0
- package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
- package/esm/pluggableElementTypes/GlyphType.js +18 -0
- package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
- package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
- package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
- package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
- package/esm/pluggableElementTypes/TrackType.js +14 -0
- package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
- package/esm/pluggableElementTypes/ViewType.js +18 -0
- package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
- package/esm/pluggableElementTypes/WidgetType.js +18 -0
- package/esm/pluggableElementTypes/index.d.ts +27 -0
- package/esm/pluggableElementTypes/index.js +14 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
- package/esm/pluggableElementTypes/models/index.d.ts +14 -0
- package/esm/pluggableElementTypes/models/index.js +8 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
- package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
- package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
- package/esm/pluggableElementTypes/renderers/index.js +6 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
- package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
- package/esm/pluggableElementTypes/renderers/util.js +14 -0
- package/esm/rpc/BaseRpcDriver.d.ts +40 -0
- package/esm/rpc/BaseRpcDriver.js +116 -0
- package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
- package/esm/rpc/MainThreadRpcDriver.js +33 -0
- package/esm/rpc/RpcManager.d.ts +35 -0
- package/esm/rpc/RpcManager.js +63 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
- package/esm/rpc/WebWorkerRpcDriver.js +77 -0
- package/esm/rpc/baseRpcConfig.d.ts +8 -0
- package/esm/rpc/baseRpcConfig.js +10 -0
- package/esm/rpc/configSchema.d.ts +9 -0
- package/esm/rpc/configSchema.js +22 -0
- package/esm/rpc/coreRpcMethods.d.ts +12 -0
- package/esm/rpc/coreRpcMethods.js +12 -0
- package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
- package/esm/rpc/mainThreadRpcConfig.js +8 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
- package/esm/rpc/methods/CoreFreeResources.js +14 -0
- package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
- package/esm/rpc/methods/CoreGetExportData.js +18 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
- package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
- package/esm/rpc/methods/CoreGetFeatures.js +31 -0
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
- package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
- package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
- package/esm/rpc/methods/CoreGetMetadata.js +15 -0
- package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
- package/esm/rpc/methods/CoreGetRefNames.js +19 -0
- package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
- package/esm/rpc/methods/CoreGetRegions.js +15 -0
- package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
- package/esm/rpc/methods/CoreGetSequence.js +17 -0
- package/esm/rpc/methods/CoreRender.d.ts +14 -0
- package/esm/rpc/methods/CoreRender.js +35 -0
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
- package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
- package/esm/rpc/methods/util.d.ts +15 -0
- package/esm/rpc/methods/util.js +7 -0
- package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
- package/esm/rpc/webWorkerRpcConfig.js +8 -0
- package/esm/ui/AppLogo.d.ts +7 -0
- package/esm/ui/AppLogo.js +10 -0
- package/esm/ui/AssemblySelector.d.ts +13 -0
- package/esm/ui/AssemblySelector.js +39 -0
- package/esm/ui/BaseTooltip.js +42 -0
- package/esm/ui/CascadingMenu.d.ts +30 -0
- package/esm/ui/CascadingMenu.js +48 -0
- package/esm/ui/CascadingMenuButton.d.ts +26 -0
- package/esm/ui/CascadingMenuButton.js +24 -0
- package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpDialog.js +10 -0
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
- package/esm/ui/ColorPicker.js +62 -0
- package/esm/ui/ConfirmDialog.js +13 -0
- package/esm/ui/DataGridFlexContainer.d.ts +5 -0
- package/esm/ui/DataGridFlexContainer.js +12 -0
- package/esm/ui/Dialog.d.ts +7 -0
- package/esm/ui/Dialog.js +45 -0
- package/esm/ui/DraggableDialog.js +27 -0
- package/esm/ui/DropDownMenu.d.ts +6 -0
- package/esm/ui/DropDownMenu.js +24 -0
- package/esm/ui/EditableTypography.js +60 -0
- package/esm/ui/ErrorBoundary.d.ts +17 -0
- package/esm/ui/ErrorBoundary.js +16 -0
- package/esm/ui/ErrorMessage.js +56 -0
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
- package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
- package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
- package/esm/ui/ExternalLink.js +7 -0
- package/esm/ui/FactoryResetDialog.js +18 -0
- package/esm/ui/FatalErrorDialog.js +18 -0
- package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
- package/esm/ui/FileSelector/FileSelector.js +52 -0
- package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
- package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
- package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
- package/esm/ui/FileSelector/LocationInput.js +15 -0
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
- package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
- package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
- package/esm/ui/FileSelector/UrlChooser.js +17 -0
- package/esm/ui/FileSelector/index.d.ts +1 -0
- package/esm/ui/FileSelector/index.js +1 -0
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
- package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
- package/esm/ui/HoverMenu.js +15 -0
- package/esm/ui/Icons.js +14 -0
- package/esm/ui/LoadingEllipses.js +31 -0
- package/esm/ui/Logo.js +42 -0
- package/esm/ui/Menu.d.ts +2 -0
- package/esm/ui/Menu.js +1 -0
- package/esm/ui/MenuButton.d.ts +1 -0
- package/esm/ui/MenuButton.js +1 -0
- package/esm/ui/MenuItems.d.ts +15 -0
- package/esm/ui/MenuItems.js +59 -0
- package/esm/ui/MenuTypes.d.ts +39 -0
- package/esm/ui/MenuTypes.js +1 -0
- package/esm/ui/PrerenderedCanvas.d.ts +10 -0
- package/esm/ui/PrerenderedCanvas.js +33 -0
- package/esm/ui/RedErrorMessageBox.js +16 -0
- package/esm/ui/ResizeHandle.js +67 -0
- package/esm/ui/ReturnToImportFormDialog.js +13 -0
- package/esm/ui/SanitizedHTML.js +61 -0
- package/esm/ui/Snackbar.d.ts +10 -0
- package/esm/ui/Snackbar.js +14 -0
- package/esm/ui/SnackbarContents.d.ts +5 -0
- package/esm/ui/SnackbarContents.js +11 -0
- package/esm/ui/SnackbarModel.d.ts +17 -0
- package/esm/ui/SnackbarModel.js +55 -0
- package/esm/ui/colors.js +67 -0
- package/esm/ui/index.d.ts +20 -0
- package/esm/ui/index.js +20 -0
- package/esm/ui/react-colorful.d.ts +3 -0
- package/esm/ui/react-colorful.js +416 -0
- package/esm/ui/theme.d.ts +58 -0
- package/esm/ui/theme.js +392 -0
- package/esm/ui/useEvent.js +10 -0
- package/esm/util/Base1DUtils.d.ts +38 -0
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- package/ui/AppLogo.js +0 -12
- package/ui/AssemblySelector.d.ts +0 -13
- package/ui/AssemblySelector.js +0 -46
- package/ui/BaseTooltip.js +0 -46
- package/ui/CascadingMenu.d.ts +0 -9
- package/ui/CascadingMenu.js +0 -114
- package/ui/CascadingMenuButton.d.ts +0 -11
- package/ui/CascadingMenuButton.js +0 -29
- package/ui/ColorPicker.js +0 -101
- package/ui/ConfirmDialog.js +0 -18
- package/ui/DataGridFlexContainer.d.ts +0 -3
- package/ui/DataGridFlexContainer.js +0 -15
- package/ui/Dialog.d.ts +0 -7
- package/ui/Dialog.js +0 -50
- package/ui/DraggableDialog.js +0 -32
- package/ui/DropDownMenu.d.ts +0 -8
- package/ui/DropDownMenu.js +0 -37
- package/ui/EditableTypography.js +0 -65
- package/ui/ErrorBoundary.d.ts +0 -17
- package/ui/ErrorBoundary.js +0 -19
- package/ui/ErrorMessage.js +0 -94
- package/ui/ErrorMessageStackTraceDialog.js +0 -149
- package/ui/ExternalLink.js +0 -13
- package/ui/FactoryResetDialog.js +0 -24
- package/ui/FatalErrorDialog.js +0 -24
- package/ui/FileSelector/FileSelector.d.ts +0 -11
- package/ui/FileSelector/FileSelector.js +0 -102
- package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
- package/ui/FileSelector/LocalFileChooser.js +0 -42
- package/ui/FileSelector/UrlChooser.d.ts +0 -8
- package/ui/FileSelector/UrlChooser.js +0 -19
- package/ui/FileSelector/index.d.ts +0 -1
- package/ui/FileSelector/index.js +0 -8
- package/ui/HoverMenu.js +0 -50
- package/ui/Icons.js +0 -23
- package/ui/LoadingEllipses.js +0 -35
- package/ui/Logo.js +0 -46
- package/ui/Menu.d.ts +0 -54
- package/ui/Menu.js +0 -233
- package/ui/MenuButton.d.ts +0 -10
- package/ui/MenuButton.js +0 -28
- package/ui/PrerenderedCanvas.d.ts +0 -10
- package/ui/PrerenderedCanvas.js +0 -34
- package/ui/RedErrorMessageBox.js +0 -19
- package/ui/ResizeHandle.js +0 -72
- package/ui/ReturnToImportFormDialog.js +0 -18
- package/ui/SanitizedHTML.js +0 -67
- package/ui/Snackbar.d.ts +0 -10
- package/ui/Snackbar.js +0 -49
- package/ui/SnackbarContents.d.ts +0 -5
- package/ui/SnackbarContents.js +0 -16
- package/ui/SnackbarModel.d.ts +0 -17
- package/ui/SnackbarModel.js +0 -96
- package/ui/colors.js +0 -78
- package/ui/hooks.d.ts +0 -66
- package/ui/hooks.js +0 -185
- package/ui/index.d.ts +0 -19
- package/ui/index.js +0 -56
- package/ui/react-colorful.d.ts +0 -17
- package/ui/react-colorful.js +0 -466
- package/ui/theme.d.ts +0 -59
- package/ui/theme.js +0 -381
- package/ui/useEvent.js +0 -47
- package/util/Base1DUtils.d.ts +0 -38
- package/util/Base1DUtils.js +0 -198
- package/util/Base1DViewModel.d.ts +0 -61
- package/util/Base1DViewModel.js +0 -135
- package/util/QuickLRU.d.ts +0 -32
- package/util/QuickLRU.js +0 -237
- package/util/TimeTraveller.d.ts +0 -19
- package/util/TimeTraveller.js +0 -90
- package/util/aborting.js +0 -48
- package/util/analytics.js +0 -86
- package/util/blobToDataURL.js +0 -17
- package/util/blockTypes.d.ts +0 -58
- package/util/blockTypes.js +0 -110
- package/util/calculateDynamicBlocks.d.ts +0 -3
- package/util/calculateDynamicBlocks.js +0 -100
- package/util/calculateStaticBlocks.d.ts +0 -13
- package/util/calculateStaticBlocks.js +0 -102
- package/util/cluster.d.ts +0 -17
- package/util/cluster.js +0 -102
- package/util/color/cssColorsLevel4.js +0 -160
- package/util/color/index.d.ts +0 -5
- package/util/color/index.js +0 -48
- package/util/colord.d.ts +0 -1
- package/util/colord.js +0 -13
- package/util/compositeMap.js +0 -61
- package/util/convertCodingSequenceToPeptides.d.ts +0 -6
- package/util/convertCodingSequenceToPeptides.js +0 -12
- package/util/dedupe.js +0 -15
- package/util/fetchSeq.d.ts +0 -8
- package/util/fetchSeq.js +0 -27
- package/util/flatbush/index.d.ts +0 -25
- package/util/flatbush/index.js +0 -362
- package/util/flatqueue/index.js +0 -66
- package/util/formatFastaStrings.js +0 -12
- package/util/idMaker.js +0 -24
- package/util/index.d.ts +0 -274
- package/util/index.js +0 -1052
- package/util/io/RemoteFileWithRangeCache.js +0 -76
- package/util/io/index.d.ts +0 -7
- package/util/io/index.js +0 -103
- package/util/jexl.d.ts +0 -4
- package/util/jexl.js +0 -55
- package/util/jexlStrings.js +0 -23
- package/util/layouts/BaseLayout.d.ts +0 -30
- package/util/layouts/BaseLayout.js +0 -2
- package/util/layouts/GranularRectLayout.d.ts +0 -37
- package/util/layouts/GranularRectLayout.js +0 -343
- package/util/layouts/MultiLayout.d.ts +0 -12
- package/util/layouts/MultiLayout.js +0 -42
- package/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/util/layouts/PrecomputedLayout.js +0 -75
- package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
- package/util/layouts/PrecomputedMultiLayout.js +0 -21
- package/util/layouts/SceneGraph.js +0 -115
- package/util/layouts/index.d.ts +0 -7
- package/util/layouts/index.js +0 -31
- package/util/makeAbortableReaction.d.ts +0 -2
- package/util/makeAbortableReaction.js +0 -50
- package/util/map-obj.d.ts +0 -3
- package/util/map-obj.js +0 -37
- package/util/mst-reflection.d.ts +0 -11
- package/util/mst-reflection.js +0 -62
- package/util/nanoid.d.ts +0 -5
- package/util/nanoid.js +0 -43
- package/util/nextTick.js +0 -6
- package/util/offscreenCanvasPonyfill.d.ts +0 -7
- package/util/offscreenCanvasPonyfill.js +0 -65
- package/util/offscreenCanvasUtils.d.ts +0 -28
- package/util/offscreenCanvasUtils.js +0 -99
- package/util/parseLineByLine.js +0 -25
- package/util/range.js +0 -26
- package/util/rxjs.d.ts +0 -3
- package/util/rxjs.js +0 -21
- package/util/simpleFeature.d.ts +0 -44
- package/util/simpleFeature.js +0 -82
- package/util/stats.d.ts +0 -21
- package/util/stats.js +0 -78
- package/util/stopToken.d.ts +0 -3
- package/util/stopToken.js +0 -29
- package/util/tracks.d.ts +0 -55
- package/util/tracks.js +0 -168
- package/util/types/index.d.ts +0 -254
- package/util/types/index.js +0 -172
- package/util/types/mst.d.ts +0 -107
- package/util/types/mst.js +0 -72
- package/util/types/util.d.ts +0 -6
- package/util/types/util.js +0 -2
- package/util/useFeatureSequence.d.ts +0 -19
- package/util/useFeatureSequence.js +0 -90
- package/util/useMeasure.js +0 -33
- package/util/when.js +0 -5
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/consts.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/util.d.ts +0 -0
- /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
- /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
- /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
- /package/{ui → esm/ui}/BaseTooltip.d.ts +0 -0
- /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
- /package/{ui → esm/ui}/ConfirmDialog.d.ts +0 -0
- /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
- /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
- /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
- /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
- /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
- /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
- /package/{ui → esm/ui}/Icons.d.ts +0 -0
- /package/{ui → esm/ui}/LoadingEllipses.d.ts +0 -0
- /package/{ui → esm/ui}/Logo.d.ts +0 -0
- /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
- /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
- /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
- /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
- /package/{ui → esm/ui}/colors.d.ts +0 -0
- /package/{ui → esm/ui}/useEvent.d.ts +0 -0
- /package/{util → esm/util}/aborting.d.ts +0 -0
- /package/{util → esm/util}/analytics.d.ts +0 -0
- /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
- /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
- /package/{util → esm/util}/compositeMap.d.ts +0 -0
- /package/{util → esm/util}/dedupe.d.ts +0 -0
- /package/{util → esm/util}/flatqueue/index.d.ts +0 -0
- /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
- /package/{util → esm/util}/idMaker.d.ts +0 -0
- /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
- /package/{util → esm/util}/jexlStrings.d.ts +0 -0
- /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
- /package/{util → esm/util}/nextTick.d.ts +0 -0
- /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
- /package/{util → esm/util}/range.d.ts +0 -0
- /package/{util → esm/util}/useMeasure.d.ts +0 -0
- /package/{util → esm/util}/when.d.ts +0 -0
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throw new Error(`unknown RPC method ${funcName}`);
|
|
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|
-
}
|
|
27
|
-
const serializedArgs = await rpcMethod.serializeArguments(args, this.name);
|
|
28
|
-
const result = await rpcMethod.execute(serializedArgs, this.name);
|
|
29
|
-
return rpcMethod.deserializeReturn(result, args, this.name);
|
|
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|
-
}
|
|
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|
-
}
|
|
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|
-
exports.default = MainThreadRpcDriver;
|
package/rpc/RpcManager.d.ts
DELETED
|
@@ -1,34 +0,0 @@
|
|
|
1
|
-
import MainThreadRpcDriver from './MainThreadRpcDriver';
|
|
2
|
-
import WebWorkerRpcDriver from './WebWorkerRpcDriver';
|
|
3
|
-
import type PluginManager from '../PluginManager';
|
|
4
|
-
import type { AnyConfigurationModel } from '../configuration';
|
|
5
|
-
type DriverClass = WebWorkerRpcDriver | MainThreadRpcDriver;
|
|
6
|
-
interface BackendConfigurations {
|
|
7
|
-
WebWorkerRpcDriver?: Omit<ConstructorParameters<typeof WebWorkerRpcDriver>[0], 'config'>;
|
|
8
|
-
MainThreadRpcDriver?: Omit<ConstructorParameters<typeof MainThreadRpcDriver>[0], 'config'>;
|
|
9
|
-
}
|
|
10
|
-
declare const DriverClasses: {
|
|
11
|
-
WebWorkerRpcDriver: typeof WebWorkerRpcDriver;
|
|
12
|
-
MainThreadRpcDriver: typeof MainThreadRpcDriver;
|
|
13
|
-
};
|
|
14
|
-
export default class RpcManager {
|
|
15
|
-
pluginManager: PluginManager;
|
|
16
|
-
mainConfiguration: AnyConfigurationModel;
|
|
17
|
-
backendConfigurations: BackendConfigurations;
|
|
18
|
-
static configSchema: import("../configuration/configurationSchema").ConfigurationSchemaType<{
|
|
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|
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defaultDriver: {
|
|
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type: string;
|
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description: string;
|
|
22
|
-
defaultValue: string;
|
|
23
|
-
};
|
|
24
|
-
drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
25
|
-
}, import("../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
26
|
-
driverObjects: Map<string, DriverClass>;
|
|
27
|
-
constructor(pluginManager: PluginManager, mainConfiguration: AnyConfigurationModel, backendConfigurations: BackendConfigurations);
|
|
28
|
-
getDriver(backendName: keyof typeof DriverClasses): DriverClass;
|
|
29
|
-
getDriverForCall(_sessionId: string, _functionName: string, args: {
|
|
30
|
-
rpcDriverName?: string;
|
|
31
|
-
}): Promise<DriverClass>;
|
|
32
|
-
call(sessionId: string, functionName: string, args: Record<string, unknown>, opts?: {}): Promise<unknown>;
|
|
33
|
-
}
|
|
34
|
-
export {};
|
package/rpc/RpcManager.js
DELETED
|
@@ -1,69 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const configuration_1 = require("../configuration");
|
|
7
|
-
const MainThreadRpcDriver_1 = __importDefault(require("./MainThreadRpcDriver"));
|
|
8
|
-
const WebWorkerRpcDriver_1 = __importDefault(require("./WebWorkerRpcDriver"));
|
|
9
|
-
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
10
|
-
const DriverClasses = {
|
|
11
|
-
WebWorkerRpcDriver: WebWorkerRpcDriver_1.default,
|
|
12
|
-
MainThreadRpcDriver: MainThreadRpcDriver_1.default,
|
|
13
|
-
};
|
|
14
|
-
class RpcManager {
|
|
15
|
-
constructor(pluginManager, mainConfiguration, backendConfigurations) {
|
|
16
|
-
this.pluginManager = pluginManager;
|
|
17
|
-
this.mainConfiguration = mainConfiguration;
|
|
18
|
-
this.backendConfigurations = backendConfigurations;
|
|
19
|
-
this.driverObjects = new Map();
|
|
20
|
-
}
|
|
21
|
-
getDriver(backendName) {
|
|
22
|
-
const driver = this.driverObjects.get(backendName);
|
|
23
|
-
if (driver) {
|
|
24
|
-
return driver;
|
|
25
|
-
}
|
|
26
|
-
const config = this.mainConfiguration.drivers.get('WebWorkerRpcDriver');
|
|
27
|
-
if (backendName === 'MainThreadRpcDriver') {
|
|
28
|
-
const backendConfiguration = this.backendConfigurations.MainThreadRpcDriver;
|
|
29
|
-
if (!backendConfiguration) {
|
|
30
|
-
throw new Error(`requested RPC driver "${backendName}" is missing config`);
|
|
31
|
-
}
|
|
32
|
-
const newDriver = new MainThreadRpcDriver_1.default({
|
|
33
|
-
...backendConfiguration,
|
|
34
|
-
config,
|
|
35
|
-
});
|
|
36
|
-
this.driverObjects.set(backendName, newDriver);
|
|
37
|
-
return newDriver;
|
|
38
|
-
}
|
|
39
|
-
else if (backendName === 'WebWorkerRpcDriver') {
|
|
40
|
-
const backendConfiguration = this.backendConfigurations.WebWorkerRpcDriver;
|
|
41
|
-
if (!backendConfiguration) {
|
|
42
|
-
throw new Error(`requested RPC driver "${backendName}" is missing config`);
|
|
43
|
-
}
|
|
44
|
-
const newDriver = new WebWorkerRpcDriver_1.default({ ...backendConfiguration, config }, {
|
|
45
|
-
plugins: this.pluginManager.runtimePluginDefinitions,
|
|
46
|
-
windowHref: window.location.href,
|
|
47
|
-
});
|
|
48
|
-
this.driverObjects.set(backendName, newDriver);
|
|
49
|
-
return newDriver;
|
|
50
|
-
}
|
|
51
|
-
else {
|
|
52
|
-
throw new Error(`requested RPC driver "${backendName}" is not installed`);
|
|
53
|
-
}
|
|
54
|
-
}
|
|
55
|
-
async getDriverForCall(_sessionId, _functionName, args) {
|
|
56
|
-
const backendName = args.rpcDriverName ||
|
|
57
|
-
(0, configuration_1.readConfObject)(this.mainConfiguration, 'defaultDriver');
|
|
58
|
-
return this.getDriver(backendName);
|
|
59
|
-
}
|
|
60
|
-
async call(sessionId, functionName, args, opts = {}) {
|
|
61
|
-
if (!sessionId) {
|
|
62
|
-
throw new Error('sessionId is required');
|
|
63
|
-
}
|
|
64
|
-
const driverForCall = await this.getDriverForCall(sessionId, functionName, args);
|
|
65
|
-
return driverForCall.call(this.pluginManager, sessionId, functionName, args, opts);
|
|
66
|
-
}
|
|
67
|
-
}
|
|
68
|
-
RpcManager.configSchema = configSchema_1.default;
|
|
69
|
-
exports.default = RpcManager;
|
|
@@ -1,29 +0,0 @@
|
|
|
1
|
-
import Rpc from 'librpc-web-mod';
|
|
2
|
-
import BaseRpcDriver from './BaseRpcDriver';
|
|
3
|
-
import type { RpcDriverConstructorArgs } from './BaseRpcDriver';
|
|
4
|
-
import type { PluginDefinition } from '../PluginLoader';
|
|
5
|
-
interface WebWorkerRpcDriverConstructorArgs extends RpcDriverConstructorArgs {
|
|
6
|
-
makeWorkerInstance: () => Worker;
|
|
7
|
-
}
|
|
8
|
-
interface Options {
|
|
9
|
-
statusCallback?: (arg0: unknown) => void;
|
|
10
|
-
rpcDriverClassName: string;
|
|
11
|
-
}
|
|
12
|
-
declare class WebWorkerHandle extends Rpc.Client {
|
|
13
|
-
destroy(): void;
|
|
14
|
-
call(funcName: string, args: Record<string, unknown>, opts: Options): Promise<unknown>;
|
|
15
|
-
}
|
|
16
|
-
export default class WebWorkerRpcDriver extends BaseRpcDriver {
|
|
17
|
-
workerBootConfiguration: {
|
|
18
|
-
plugins: PluginDefinition[];
|
|
19
|
-
windowHref: string;
|
|
20
|
-
};
|
|
21
|
-
name: string;
|
|
22
|
-
makeWorkerInstance: () => Worker;
|
|
23
|
-
constructor(args: WebWorkerRpcDriverConstructorArgs, workerBootConfiguration: {
|
|
24
|
-
plugins: PluginDefinition[];
|
|
25
|
-
windowHref: string;
|
|
26
|
-
});
|
|
27
|
-
makeWorker(): Promise<WebWorkerHandle>;
|
|
28
|
-
}
|
|
29
|
-
export {};
|
|
@@ -1,65 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const librpc_web_mod_1 = __importDefault(require("librpc-web-mod"));
|
|
7
|
-
const serialize_error_1 = require("serialize-error");
|
|
8
|
-
const BaseRpcDriver_1 = __importDefault(require("./BaseRpcDriver"));
|
|
9
|
-
const nanoid_1 = require("../util/nanoid");
|
|
10
|
-
class WebWorkerHandle extends librpc_web_mod_1.default.Client {
|
|
11
|
-
destroy() {
|
|
12
|
-
this.workers[0].terminate();
|
|
13
|
-
}
|
|
14
|
-
async call(funcName, args, opts) {
|
|
15
|
-
const { statusCallback, rpcDriverClassName } = opts;
|
|
16
|
-
const channel = `message-${(0, nanoid_1.nanoid)()}`;
|
|
17
|
-
const listener = (message) => {
|
|
18
|
-
statusCallback === null || statusCallback === void 0 ? void 0 : statusCallback(message);
|
|
19
|
-
};
|
|
20
|
-
this.on(channel, listener);
|
|
21
|
-
const result = await super.call(funcName, { ...args, channel, rpcDriverClassName }, opts);
|
|
22
|
-
this.off(channel, listener);
|
|
23
|
-
return result;
|
|
24
|
-
}
|
|
25
|
-
}
|
|
26
|
-
class WebWorkerRpcDriver extends BaseRpcDriver_1.default {
|
|
27
|
-
constructor(args, workerBootConfiguration) {
|
|
28
|
-
super(args);
|
|
29
|
-
this.workerBootConfiguration = workerBootConfiguration;
|
|
30
|
-
this.name = 'WebWorkerRpcDriver';
|
|
31
|
-
this.makeWorkerInstance = args.makeWorkerInstance;
|
|
32
|
-
}
|
|
33
|
-
async makeWorker() {
|
|
34
|
-
const instance = this.makeWorkerInstance();
|
|
35
|
-
const worker = new WebWorkerHandle({ workers: [instance] });
|
|
36
|
-
const isSafari = /^((?!chrome|android).)*safari/i.test(navigator.userAgent);
|
|
37
|
-
if (isSafari) {
|
|
38
|
-
console.log('console logging the webworker handle avoids the track going into an infinite loading state, this is a hacky workaround for safari', instance);
|
|
39
|
-
}
|
|
40
|
-
return new Promise((resolve, reject) => {
|
|
41
|
-
const listener = (e) => {
|
|
42
|
-
switch (e.data.message) {
|
|
43
|
-
case 'ready': {
|
|
44
|
-
resolve(worker);
|
|
45
|
-
worker.workers[0].removeEventListener('message', listener);
|
|
46
|
-
break;
|
|
47
|
-
}
|
|
48
|
-
case 'readyForConfig': {
|
|
49
|
-
worker.workers[0].postMessage({
|
|
50
|
-
message: 'config',
|
|
51
|
-
config: this.workerBootConfiguration,
|
|
52
|
-
});
|
|
53
|
-
break;
|
|
54
|
-
}
|
|
55
|
-
case 'error': {
|
|
56
|
-
reject((0, serialize_error_1.deserializeError)(e.data.error));
|
|
57
|
-
break;
|
|
58
|
-
}
|
|
59
|
-
}
|
|
60
|
-
};
|
|
61
|
-
worker.workers[0].addEventListener('message', listener);
|
|
62
|
-
});
|
|
63
|
-
}
|
|
64
|
-
}
|
|
65
|
-
exports.default = WebWorkerRpcDriver;
|
package/rpc/baseRpcConfig.d.ts
DELETED
|
@@ -1,8 +0,0 @@
|
|
|
1
|
-
declare const BaseRpcDriverConfigSchema: import("../configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
workerCount: {
|
|
3
|
-
type: string;
|
|
4
|
-
description: string;
|
|
5
|
-
defaultValue: number;
|
|
6
|
-
};
|
|
7
|
-
}, import("../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
8
|
-
export default BaseRpcDriverConfigSchema;
|
package/rpc/baseRpcConfig.js
DELETED
|
@@ -1,12 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const configuration_1 = require("../configuration");
|
|
4
|
-
function x() { }
|
|
5
|
-
const BaseRpcDriverConfigSchema = (0, configuration_1.ConfigurationSchema)('BaseRpcDriver', {
|
|
6
|
-
workerCount: {
|
|
7
|
-
type: 'number',
|
|
8
|
-
description: 'The number of workers to use. If 0 (the default) JBrowse will decide how many workers to use.',
|
|
9
|
-
defaultValue: 0,
|
|
10
|
-
},
|
|
11
|
-
}, { explicitlyTyped: true });
|
|
12
|
-
exports.default = BaseRpcDriverConfigSchema;
|
package/rpc/configSchema.d.ts
DELETED
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
declare const _default: import("../configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
defaultDriver: {
|
|
3
|
-
type: string;
|
|
4
|
-
description: string;
|
|
5
|
-
defaultValue: string;
|
|
6
|
-
};
|
|
7
|
-
drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
8
|
-
}, import("../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
9
|
-
export default _default;
|
package/rpc/configSchema.js
DELETED
|
@@ -1,27 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
7
|
-
const configuration_1 = require("../configuration");
|
|
8
|
-
const mainThreadRpcConfig_1 = __importDefault(require("./mainThreadRpcConfig"));
|
|
9
|
-
const webWorkerRpcConfig_1 = __importDefault(require("./webWorkerRpcConfig"));
|
|
10
|
-
function x() { }
|
|
11
|
-
exports.default = (0, configuration_1.ConfigurationSchema)('RpcOptions', {
|
|
12
|
-
defaultDriver: {
|
|
13
|
-
type: 'string',
|
|
14
|
-
description: 'the RPC driver to use for tracks and tasks that are not configured to use a specific RPC backend',
|
|
15
|
-
defaultValue: 'MainThreadRpcDriver',
|
|
16
|
-
},
|
|
17
|
-
drivers: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.map(mobx_state_tree_1.types.union(mainThreadRpcConfig_1.default, webWorkerRpcConfig_1.default)), {
|
|
18
|
-
MainThreadRpcDriver: { type: 'MainThreadRpcDriver' },
|
|
19
|
-
WebWorkerRpcDriver: { type: 'WebWorkerRpcDriver' },
|
|
20
|
-
}),
|
|
21
|
-
}, {
|
|
22
|
-
actions: (self) => ({
|
|
23
|
-
addDriverConfig(configName, configSnapshot) {
|
|
24
|
-
self.drivers.set(configName, configSnapshot);
|
|
25
|
-
},
|
|
26
|
-
}),
|
|
27
|
-
});
|
package/rpc/coreRpcMethods.d.ts
DELETED
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
export { default as CoreGetRefNames } from './methods/CoreGetRefNames';
|
|
2
|
-
export { default as CoreGetFeatureDetails } from './methods/CoreGetFeatureDetails';
|
|
3
|
-
export { default as CoreGetMetadata } from './methods/CoreGetMetadata';
|
|
4
|
-
export { default as CoreGetFileInfo } from './methods/CoreGetFileInfo';
|
|
5
|
-
export { default as CoreGetFeatures } from './methods/CoreGetFeatures';
|
|
6
|
-
export { default as CoreRender } from './methods/CoreRender';
|
|
7
|
-
export { default as CoreFreeResources } from './methods/CoreFreeResources';
|
|
8
|
-
export { default as CoreGetFeatureDensityStats } from './methods/CoreGetFeatureDensityStats';
|
|
9
|
-
export { type RenderArgs } from './methods/util';
|
package/rpc/coreRpcMethods.js
DELETED
|
@@ -1,22 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.CoreGetFeatureDensityStats = exports.CoreFreeResources = exports.CoreRender = exports.CoreGetFeatures = exports.CoreGetFileInfo = exports.CoreGetMetadata = exports.CoreGetFeatureDetails = exports.CoreGetRefNames = void 0;
|
|
7
|
-
var CoreGetRefNames_1 = require("./methods/CoreGetRefNames");
|
|
8
|
-
Object.defineProperty(exports, "CoreGetRefNames", { enumerable: true, get: function () { return __importDefault(CoreGetRefNames_1).default; } });
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var CoreGetFeatureDetails_1 = require("./methods/CoreGetFeatureDetails");
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Object.defineProperty(exports, "CoreGetFeatureDetails", { enumerable: true, get: function () { return __importDefault(CoreGetFeatureDetails_1).default; } });
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var CoreGetMetadata_1 = require("./methods/CoreGetMetadata");
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Object.defineProperty(exports, "CoreGetMetadata", { enumerable: true, get: function () { return __importDefault(CoreGetMetadata_1).default; } });
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var CoreGetFileInfo_1 = require("./methods/CoreGetFileInfo");
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Object.defineProperty(exports, "CoreGetFileInfo", { enumerable: true, get: function () { return __importDefault(CoreGetFileInfo_1).default; } });
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var CoreGetFeatures_1 = require("./methods/CoreGetFeatures");
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Object.defineProperty(exports, "CoreGetFeatures", { enumerable: true, get: function () { return __importDefault(CoreGetFeatures_1).default; } });
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var CoreRender_1 = require("./methods/CoreRender");
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Object.defineProperty(exports, "CoreRender", { enumerable: true, get: function () { return __importDefault(CoreRender_1).default; } });
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var CoreFreeResources_1 = require("./methods/CoreFreeResources");
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Object.defineProperty(exports, "CoreFreeResources", { enumerable: true, get: function () { return __importDefault(CoreFreeResources_1).default; } });
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var CoreGetFeatureDensityStats_1 = require("./methods/CoreGetFeatureDensityStats");
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Object.defineProperty(exports, "CoreGetFeatureDensityStats", { enumerable: true, get: function () { return __importDefault(CoreGetFeatureDensityStats_1).default; } });
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@@ -1,8 +0,0 @@
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declare const MainThreadRpcDriverConfigSchema: import("../configuration/configurationSchema").ConfigurationSchemaType<{}, import("../configuration/configurationSchema").ConfigurationSchemaOptions<import("../configuration/configurationSchema").ConfigurationSchemaType<{
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workerCount: {
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type: string;
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defaultValue: number;
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}, import("../configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>, undefined>>;
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export default MainThreadRpcDriverConfigSchema;
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@@ -1,13 +0,0 @@
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var __importDefault = (this && this.__importDefault) || function (mod) {
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const configuration_1 = require("../configuration");
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const baseRpcConfig_1 = __importDefault(require("./baseRpcConfig"));
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function x() { }
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const MainThreadRpcDriverConfigSchema = (0, configuration_1.ConfigurationSchema)('MainThreadRpcDriver', {}, {
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baseConfiguration: baseRpcConfig_1.default,
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explicitlyTyped: true,
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});
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exports.default = MainThreadRpcDriverConfigSchema;
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@@ -1,6 +0,0 @@
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import RpcMethodType from '../../pluggableElementTypes/RpcMethodType';
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export default class CoreFreeResources extends RpcMethodType {
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name: string;
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execute(args: Record<string, unknown>): Promise<void>;
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serializeArguments(args: Record<string, unknown>, _rpcDriver: string): Promise<Record<string, unknown>>;
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}
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@@ -1,23 +0,0 @@
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"use strict";
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var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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const dataAdapterCache_1 = require("../../data_adapters/dataAdapterCache");
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const RpcMethodType_1 = __importDefault(require("../../pluggableElementTypes/RpcMethodType"));
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class CoreFreeResources extends RpcMethodType_1.default {
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constructor() {
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super(...arguments);
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this.name = 'CoreFreeResources';
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}
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async execute(args) {
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await (0, dataAdapterCache_1.freeAdapterResources)(args);
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for (const renderer of this.pluginManager.getRendererTypes()) {
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renderer.freeResources(args);
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}
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}
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async serializeArguments(args, _rpcDriver) {
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return args;
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}
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}
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exports.default = CoreFreeResources;
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@@ -1,17 +0,0 @@
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import RpcMethodType from '../../pluggableElementTypes/RpcMethodType';
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import type { RenderArgs } from './util';
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import type { Region } from '../../util';
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export default class CoreGetFeatureDensityStats extends RpcMethodType {
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name: string;
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serializeArguments(args: RenderArgs & {
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statusCallback?: (arg: string) => void;
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}, rpcDriver: string): Promise<Record<string, unknown>>;
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execute(args: {
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adapterConfig: Record<string, unknown>;
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regions: Region[];
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stopToken?: string;
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headers?: Record<string, string>;
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sessionId: string;
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|
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}, rpcDriver: string): Promise<import("../../data_adapters/BaseAdapter").FeatureDensityStats>;
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|
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}
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@@ -1,36 +0,0 @@
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|
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"use strict";
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|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
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|
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return (mod && mod.__esModule) ? mod : { "default": mod };
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|
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};
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|
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Object.defineProperty(exports, "__esModule", { value: true });
|
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|
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const BaseAdapter_1 = require("../../data_adapters/BaseAdapter");
|
|
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|
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const dataAdapterCache_1 = require("../../data_adapters/dataAdapterCache");
|
|
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|
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const RpcMethodType_1 = __importDefault(require("../../pluggableElementTypes/RpcMethodType"));
|
|
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|
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const util_1 = require("../../util");
|
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|
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class CoreGetFeatureDensityStats extends RpcMethodType_1.default {
|
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|
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constructor() {
|
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|
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super(...arguments);
|
|
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|
-
this.name = 'CoreGetFeatureDensityStats';
|
|
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|
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}
|
|
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|
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async serializeArguments(args, rpcDriver) {
|
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|
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var _a;
|
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|
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const { rootModel } = this.pluginManager;
|
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|
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const assemblyManager = rootModel.session.assemblyManager;
|
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|
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const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
|
|
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|
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...args,
|
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|
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filters: (_a = args.filters) === null || _a === void 0 ? void 0 : _a.toJSON().filters,
|
|
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|
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});
|
|
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|
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return super.serializeArguments(renamedArgs, rpcDriver);
|
|
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|
-
}
|
|
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|
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async execute(args, rpcDriver) {
|
|
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|
-
const pm = this.pluginManager;
|
|
27
|
-
const deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
|
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|
-
const { adapterConfig, sessionId, regions } = deserializedArgs;
|
|
29
|
-
const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
|
|
30
|
-
if (!(0, BaseAdapter_1.isFeatureAdapter)(dataAdapter)) {
|
|
31
|
-
throw new Error('Adapter does not support retrieving features');
|
|
32
|
-
}
|
|
33
|
-
return dataAdapter.getMultiRegionFeatureDensityStats(regions, deserializedArgs);
|
|
34
|
-
}
|
|
35
|
-
}
|
|
36
|
-
exports.default = CoreGetFeatureDensityStats;
|
|
@@ -1,11 +0,0 @@
|
|
|
1
|
-
import RpcMethodType from '../../pluggableElementTypes/RpcMethodType';
|
|
2
|
-
import type { RenderArgs, RenderArgsSerialized } from './util';
|
|
3
|
-
export default class CoreGetFeatureDetails extends RpcMethodType {
|
|
4
|
-
name: string;
|
|
5
|
-
serializeArguments(args: RenderArgs, rpcDriver: string): Promise<any>;
|
|
6
|
-
execute(args: RenderArgsSerialized & {
|
|
7
|
-
stopToken?: string;
|
|
8
|
-
}, rpcDriver: string): Promise<{
|
|
9
|
-
feature: any;
|
|
10
|
-
}>;
|
|
11
|
-
}
|
|
@@ -1,38 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
|
-
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
|
-
};
|
|
5
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const RpcMethodType_1 = __importDefault(require("../../pluggableElementTypes/RpcMethodType"));
|
|
7
|
-
const util_1 = require("../../util");
|
|
8
|
-
class CoreGetFeatureDetails extends RpcMethodType_1.default {
|
|
9
|
-
constructor() {
|
|
10
|
-
super(...arguments);
|
|
11
|
-
this.name = 'CoreGetFeatureDetails';
|
|
12
|
-
}
|
|
13
|
-
async serializeArguments(args, rpcDriver) {
|
|
14
|
-
const { rootModel } = this.pluginManager;
|
|
15
|
-
const assemblyManager = rootModel.session.assemblyManager;
|
|
16
|
-
const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, args);
|
|
17
|
-
const superArgs = (await super.serializeArguments(renamedArgs, rpcDriver));
|
|
18
|
-
if (rpcDriver === 'MainThreadRpcDriver') {
|
|
19
|
-
return superArgs;
|
|
20
|
-
}
|
|
21
|
-
const { rendererType } = args;
|
|
22
|
-
const RendererType = this.pluginManager.getRendererType(rendererType);
|
|
23
|
-
return RendererType.serializeArgsInClient(superArgs);
|
|
24
|
-
}
|
|
25
|
-
async execute(args, rpcDriver) {
|
|
26
|
-
var _a, _b;
|
|
27
|
-
let deserializedArgs = args;
|
|
28
|
-
if (rpcDriver !== 'MainThreadRpcDriver') {
|
|
29
|
-
deserializedArgs = await this.deserializeArguments(args, rpcDriver);
|
|
30
|
-
}
|
|
31
|
-
const { rendererType, featureId } = deserializedArgs;
|
|
32
|
-
const RendererType = this.pluginManager.getRendererType(rendererType);
|
|
33
|
-
return {
|
|
34
|
-
feature: (_b = (_a = RendererType.getLayoutSession(args)) === null || _a === void 0 ? void 0 : _a.cachedLayout.layout.getDataByID(featureId)) === null || _b === void 0 ? void 0 : _b.toJSON(),
|
|
35
|
-
};
|
|
36
|
-
}
|
|
37
|
-
}
|
|
38
|
-
exports.default = CoreGetFeatureDetails;
|
|
@@ -1,18 +0,0 @@
|
|
|
1
|
-
import RpcMethodType from '../../pluggableElementTypes/RpcMethodType';
|
|
2
|
-
import SimpleFeature from '../../util/simpleFeature';
|
|
3
|
-
import type { RenderArgs } from './util';
|
|
4
|
-
import type { Region } from '../../util';
|
|
5
|
-
import type { SimpleFeatureSerialized } from '../../util/simpleFeature';
|
|
6
|
-
export default class CoreGetFeatures extends RpcMethodType {
|
|
7
|
-
name: string;
|
|
8
|
-
deserializeReturn(feats: SimpleFeatureSerialized[], args: unknown, rpcDriver: string): Promise<SimpleFeature[]>;
|
|
9
|
-
serializeArguments(args: RenderArgs, rpcDriver: string): Promise<RenderArgs>;
|
|
10
|
-
execute(args: {
|
|
11
|
-
sessionId: string;
|
|
12
|
-
regions: Region[];
|
|
13
|
-
adapterConfig: Record<string, unknown>;
|
|
14
|
-
statusCallback: (arg: string) => void;
|
|
15
|
-
stopToken?: string;
|
|
16
|
-
opts?: any;
|
|
17
|
-
}, rpcDriver: string): Promise<SimpleFeatureSerialized[]>;
|
|
18
|
-
}
|