@jbrowse/core 3.7.0 → 4.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +32 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +13 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +43 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +17 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +20 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +57 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +11 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +42 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +2 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +14 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +22 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +7 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/types.js +1 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +41 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +44 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +7 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +34 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +26 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +3 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +29 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +11 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +40 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +105 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +5 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +64 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +6 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +48 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +31 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +83 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +16 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +52 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +9 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +21 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +10 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +22 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +80 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +583 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +141 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +1116 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.js +1 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +13 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +73 -0
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +42 -0
- package/esm/BaseFeatureWidget/configSchema.d.ts +2 -0
- package/esm/BaseFeatureWidget/configSchema.js +3 -0
- package/esm/BaseFeatureWidget/index.d.ts +2 -0
- package/esm/BaseFeatureWidget/index.js +2 -0
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +101 -0
- package/esm/BaseFeatureWidget/stateModelFactory.js +96 -0
- package/esm/BaseFeatureWidget/types.d.ts +22 -0
- package/esm/BaseFeatureWidget/types.js +1 -0
- package/esm/BaseFeatureWidget/util.d.ts +51 -0
- package/esm/BaseFeatureWidget/util.js +95 -0
- package/esm/CorePlugin.d.ts +6 -0
- package/esm/CorePlugin.js +24 -0
- package/esm/PhasedScheduler.js +25 -0
- package/esm/Plugin.d.ts +13 -0
- package/esm/Plugin.js +9 -0
- package/esm/PluginLoader.d.ts +64 -0
- package/esm/PluginLoader.js +164 -0
- package/esm/PluginManager.d.ts +125 -0
- package/esm/PluginManager.js +414 -0
- package/esm/ReExports/BaseFeatureDetails.js +9 -0
- package/esm/ReExports/DataGrid.js +1 -0
- package/esm/ReExports/MuiDataGridReExports.js +131 -0
- package/esm/ReExports/MuiReExports.d.ts +134 -0
- package/esm/ReExports/MuiReExports.js +115 -0
- package/esm/ReExports/index.d.ts +1 -0
- package/esm/ReExports/index.js +1 -0
- package/esm/ReExports/lazify.js +10 -0
- package/esm/ReExports/list.js +275 -0
- package/esm/ReExports/modules.js +149 -0
- package/esm/TextSearch/BaseResults.d.ts +46 -0
- package/esm/TextSearch/BaseResults.js +67 -0
- package/esm/TextSearch/TextSearchManager.d.ts +48 -0
- package/esm/TextSearch/TextSearchManager.js +77 -0
- package/esm/assemblyManager/assembly.d.ts +75 -0
- package/esm/assemblyManager/assembly.js +328 -0
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +27 -0
- package/esm/assemblyManager/assemblyConfigSchema.js +51 -0
- package/esm/assemblyManager/assemblyManager.d.ts +528 -0
- package/esm/assemblyManager/assemblyManager.js +131 -0
- package/esm/assemblyManager/index.d.ts +3 -0
- package/esm/assemblyManager/index.js +2 -0
- package/esm/configuration/configurationSchema.d.ts +37 -0
- package/esm/configuration/configurationSchema.js +230 -0
- package/esm/configuration/configurationSlot.d.ts +33 -0
- package/esm/configuration/configurationSlot.js +239 -0
- package/esm/configuration/index.d.ts +3 -0
- package/esm/configuration/index.js +2 -0
- package/esm/configuration/types.d.ts +14 -0
- package/esm/configuration/types.js +1 -0
- package/esm/configuration/util.d.ts +10 -0
- package/esm/configuration/util.js +123 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +16 -0
- package/esm/data_adapters/BaseAdapter/BaseAdapter.js +31 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +24 -0
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +68 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +18 -0
- package/esm/data_adapters/BaseAdapter/BaseOptions.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +11 -0
- package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +12 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +6 -0
- package/esm/data_adapters/BaseAdapter/RegionsAdapter.js +1 -0
- package/esm/data_adapters/BaseAdapter/index.d.ts +13 -0
- package/esm/data_adapters/BaseAdapter/index.js +5 -0
- package/esm/data_adapters/BaseAdapter/stats.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/stats.js +48 -0
- package/esm/data_adapters/BaseAdapter/types.d.ts +23 -0
- package/esm/data_adapters/BaseAdapter/types.js +1 -0
- package/esm/data_adapters/BaseAdapter/util.d.ts +12 -0
- package/esm/data_adapters/BaseAdapter/util.js +15 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +6 -0
- package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +28 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.js +24 -0
- package/esm/data_adapters/CytobandAdapter/index.d.ts +2 -0
- package/esm/data_adapters/CytobandAdapter/index.js +12 -0
- package/esm/data_adapters/dataAdapterCache.d.ts +14 -0
- package/esm/data_adapters/dataAdapterCache.js +54 -0
- package/esm/data_adapters/util.js +4 -0
- package/esm/pluggableElementTypes/AdapterType.d.ts +25 -0
- package/esm/pluggableElementTypes/AdapterType.js +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +17 -0
- package/esm/pluggableElementTypes/AddTrackWorkflowType.js +10 -0
- package/esm/pluggableElementTypes/ConnectionType.d.ts +20 -0
- package/esm/pluggableElementTypes/ConnectionType.js +16 -0
- package/esm/pluggableElementTypes/DisplayType.d.ts +30 -0
- package/esm/pluggableElementTypes/DisplayType.js +20 -0
- package/esm/pluggableElementTypes/GlyphType.d.ts +43 -0
- package/esm/pluggableElementTypes/GlyphType.js +18 -0
- package/esm/pluggableElementTypes/InternetAccountType.d.ts +12 -0
- package/esm/pluggableElementTypes/InternetAccountType.js +10 -0
- package/esm/pluggableElementTypes/PluggableElementBase.js +11 -0
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +19 -0
- package/esm/pluggableElementTypes/RpcMethodType.js +88 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +11 -0
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +28 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +18 -0
- package/esm/pluggableElementTypes/TextSearchAdapterType.js +15 -0
- package/esm/pluggableElementTypes/TrackType.d.ts +16 -0
- package/esm/pluggableElementTypes/TrackType.js +14 -0
- package/esm/pluggableElementTypes/ViewType.d.ts +29 -0
- package/esm/pluggableElementTypes/ViewType.js +18 -0
- package/esm/pluggableElementTypes/WidgetType.d.ts +27 -0
- package/esm/pluggableElementTypes/WidgetType.js +18 -0
- package/esm/pluggableElementTypes/index.d.ts +27 -0
- package/esm/pluggableElementTypes/index.js +14 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +29 -0
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +35 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +180 -0
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +104 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +74 -0
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +203 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +52 -0
- package/esm/pluggableElementTypes/models/BaseViewModel.js +42 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +86 -0
- package/esm/pluggableElementTypes/models/InternetAccountModel.js +151 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +16 -0
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +27 -0
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +32 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +87 -0
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +134 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +11 -0
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +158 -0
- package/esm/pluggableElementTypes/models/index.d.ts +14 -0
- package/esm/pluggableElementTypes/models/index.js +8 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.d.ts +4 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +9 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +17 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +7 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +108 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +5 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +91 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +11 -0
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.js +1 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +52 -0
- package/esm/pluggableElementTypes/renderers/BoxRendererType.js +78 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +4 -0
- package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +4 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +58 -0
- package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +77 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +31 -0
- package/esm/pluggableElementTypes/renderers/LayoutSession.js +37 -0
- package/esm/pluggableElementTypes/renderers/RendererType.d.ts +28 -0
- package/esm/pluggableElementTypes/renderers/RendererType.js +20 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +57 -0
- package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +113 -0
- package/esm/pluggableElementTypes/renderers/index.d.ts +6 -0
- package/esm/pluggableElementTypes/renderers/index.js +6 -0
- package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +30 -0
- package/esm/pluggableElementTypes/renderers/util.d.ts +3 -0
- package/esm/pluggableElementTypes/renderers/util.js +14 -0
- package/esm/rpc/BaseRpcDriver.d.ts +40 -0
- package/esm/rpc/BaseRpcDriver.js +116 -0
- package/esm/rpc/MainThreadRpcDriver.d.ts +14 -0
- package/esm/rpc/MainThreadRpcDriver.js +33 -0
- package/esm/rpc/RpcManager.d.ts +35 -0
- package/esm/rpc/RpcManager.js +63 -0
- package/esm/rpc/WebWorkerRpcDriver.d.ts +31 -0
- package/esm/rpc/WebWorkerRpcDriver.js +77 -0
- package/esm/rpc/baseRpcConfig.d.ts +8 -0
- package/esm/rpc/baseRpcConfig.js +10 -0
- package/esm/rpc/configSchema.d.ts +9 -0
- package/esm/rpc/configSchema.js +22 -0
- package/esm/rpc/coreRpcMethods.d.ts +12 -0
- package/esm/rpc/coreRpcMethods.js +12 -0
- package/esm/rpc/mainThreadRpcConfig.d.ts +8 -0
- package/esm/rpc/mainThreadRpcConfig.js +8 -0
- package/esm/rpc/methods/CoreFreeResources.d.ts +6 -0
- package/esm/rpc/methods/CoreFreeResources.js +14 -0
- package/esm/rpc/methods/CoreGetExportData.d.ts +19 -0
- package/esm/rpc/methods/CoreGetExportData.js +18 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +17 -0
- package/esm/rpc/methods/CoreGetFeatureDensityStats.js +25 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +11 -0
- package/esm/rpc/methods/CoreGetFeatureDetails.js +24 -0
- package/esm/rpc/methods/CoreGetFeatures.d.ts +18 -0
- package/esm/rpc/methods/CoreGetFeatures.js +31 -0
- package/esm/rpc/methods/CoreGetFileInfo.d.ts +9 -0
- package/esm/rpc/methods/CoreGetFileInfo.js +15 -0
- package/esm/rpc/methods/CoreGetMetadata.d.ts +9 -0
- package/esm/rpc/methods/CoreGetMetadata.js +15 -0
- package/esm/rpc/methods/CoreGetRefNames.d.ts +10 -0
- package/esm/rpc/methods/CoreGetRefNames.js +19 -0
- package/esm/rpc/methods/CoreGetRegions.d.ts +8 -0
- package/esm/rpc/methods/CoreGetRegions.js +15 -0
- package/esm/rpc/methods/CoreGetSequence.d.ts +13 -0
- package/esm/rpc/methods/CoreGetSequence.js +17 -0
- package/esm/rpc/methods/CoreRender.d.ts +14 -0
- package/esm/rpc/methods/CoreRender.js +35 -0
- package/esm/rpc/methods/CoreSaveFeatureData.d.ts +16 -0
- package/esm/rpc/methods/CoreSaveFeatureData.js +32 -0
- package/esm/rpc/methods/util.d.ts +15 -0
- package/esm/rpc/methods/util.js +7 -0
- package/esm/rpc/webWorkerRpcConfig.d.ts +8 -0
- package/esm/rpc/webWorkerRpcConfig.js +8 -0
- package/esm/ui/AppLogo.d.ts +7 -0
- package/esm/ui/AppLogo.js +10 -0
- package/esm/ui/AssemblySelector.d.ts +13 -0
- package/esm/ui/AssemblySelector.js +39 -0
- package/esm/ui/BaseTooltip.js +42 -0
- package/esm/ui/CascadingMenu.d.ts +30 -0
- package/esm/ui/CascadingMenu.js +48 -0
- package/esm/ui/CascadingMenuButton.d.ts +26 -0
- package/esm/ui/CascadingMenuButton.js +24 -0
- package/esm/ui/CascadingMenuHelpDialog.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpDialog.js +10 -0
- package/esm/ui/CascadingMenuHelpIconButton.d.ts +5 -0
- package/esm/ui/CascadingMenuHelpIconButton.js +15 -0
- package/esm/ui/ColorPicker.js +62 -0
- package/esm/ui/ConfirmDialog.js +13 -0
- package/esm/ui/DataGridFlexContainer.d.ts +5 -0
- package/esm/ui/DataGridFlexContainer.js +12 -0
- package/esm/ui/Dialog.d.ts +7 -0
- package/esm/ui/Dialog.js +45 -0
- package/esm/ui/DraggableDialog.js +27 -0
- package/esm/ui/DropDownMenu.d.ts +6 -0
- package/esm/ui/DropDownMenu.js +24 -0
- package/esm/ui/EditableTypography.js +60 -0
- package/esm/ui/ErrorBoundary.d.ts +17 -0
- package/esm/ui/ErrorBoundary.js +16 -0
- package/esm/ui/ErrorMessage.js +56 -0
- package/esm/ui/ErrorMessageStackTraceContents.d.ts +4 -0
- package/esm/ui/ErrorMessageStackTraceContents.js +25 -0
- package/esm/ui/ErrorMessageStackTraceDialog.js +108 -0
- package/esm/ui/ExternalLink.js +7 -0
- package/esm/ui/FactoryResetDialog.js +18 -0
- package/esm/ui/FatalErrorDialog.js +18 -0
- package/esm/ui/FileSelector/FileSelector.d.ts +11 -0
- package/esm/ui/FileSelector/FileSelector.js +52 -0
- package/esm/ui/FileSelector/LocalFileChooser.d.ts +6 -0
- package/esm/ui/FileSelector/LocalFileChooser.js +39 -0
- package/esm/ui/FileSelector/LocationInput.d.ts +9 -0
- package/esm/ui/FileSelector/LocationInput.js +15 -0
- package/esm/ui/FileSelector/SourceTypeSelector.d.ts +9 -0
- package/esm/ui/FileSelector/SourceTypeSelector.js +38 -0
- package/esm/ui/FileSelector/UrlChooser.d.ts +8 -0
- package/esm/ui/FileSelector/UrlChooser.js +17 -0
- package/esm/ui/FileSelector/index.d.ts +1 -0
- package/esm/ui/FileSelector/index.js +1 -0
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +178 -0
- package/esm/ui/FileSelector/useInternetAccounts.js +18 -0
- package/esm/ui/HoverMenu.js +15 -0
- package/esm/ui/Icons.js +14 -0
- package/esm/ui/LoadingEllipses.js +31 -0
- package/esm/ui/Logo.js +42 -0
- package/esm/ui/Menu.d.ts +2 -0
- package/esm/ui/Menu.js +1 -0
- package/esm/ui/MenuButton.d.ts +1 -0
- package/esm/ui/MenuButton.js +1 -0
- package/esm/ui/MenuItems.d.ts +15 -0
- package/esm/ui/MenuItems.js +59 -0
- package/esm/ui/MenuTypes.d.ts +39 -0
- package/esm/ui/MenuTypes.js +1 -0
- package/esm/ui/PrerenderedCanvas.d.ts +10 -0
- package/esm/ui/PrerenderedCanvas.js +33 -0
- package/esm/ui/RedErrorMessageBox.js +16 -0
- package/esm/ui/ResizeHandle.js +67 -0
- package/esm/ui/ReturnToImportFormDialog.js +13 -0
- package/esm/ui/SanitizedHTML.js +61 -0
- package/esm/ui/Snackbar.d.ts +10 -0
- package/esm/ui/Snackbar.js +14 -0
- package/esm/ui/SnackbarContents.d.ts +5 -0
- package/esm/ui/SnackbarContents.js +11 -0
- package/esm/ui/SnackbarModel.d.ts +17 -0
- package/esm/ui/SnackbarModel.js +55 -0
- package/esm/ui/colors.js +67 -0
- package/esm/ui/index.d.ts +20 -0
- package/esm/ui/index.js +20 -0
- package/esm/ui/react-colorful.d.ts +3 -0
- package/esm/ui/react-colorful.js +416 -0
- package/esm/ui/theme.d.ts +58 -0
- package/esm/ui/theme.js +392 -0
- package/esm/ui/useEvent.js +10 -0
- package/esm/util/Base1DUtils.d.ts +38 -0
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- package/ui/AppLogo.js +0 -12
- package/ui/AssemblySelector.d.ts +0 -13
- package/ui/AssemblySelector.js +0 -46
- package/ui/BaseTooltip.js +0 -46
- package/ui/CascadingMenu.d.ts +0 -9
- package/ui/CascadingMenu.js +0 -114
- package/ui/CascadingMenuButton.d.ts +0 -11
- package/ui/CascadingMenuButton.js +0 -29
- package/ui/ColorPicker.js +0 -101
- package/ui/ConfirmDialog.js +0 -18
- package/ui/DataGridFlexContainer.d.ts +0 -3
- package/ui/DataGridFlexContainer.js +0 -15
- package/ui/Dialog.d.ts +0 -7
- package/ui/Dialog.js +0 -50
- package/ui/DraggableDialog.js +0 -32
- package/ui/DropDownMenu.d.ts +0 -8
- package/ui/DropDownMenu.js +0 -37
- package/ui/EditableTypography.js +0 -65
- package/ui/ErrorBoundary.d.ts +0 -17
- package/ui/ErrorBoundary.js +0 -19
- package/ui/ErrorMessage.js +0 -94
- package/ui/ErrorMessageStackTraceDialog.js +0 -149
- package/ui/ExternalLink.js +0 -13
- package/ui/FactoryResetDialog.js +0 -24
- package/ui/FatalErrorDialog.js +0 -24
- package/ui/FileSelector/FileSelector.d.ts +0 -11
- package/ui/FileSelector/FileSelector.js +0 -102
- package/ui/FileSelector/LocalFileChooser.d.ts +0 -6
- package/ui/FileSelector/LocalFileChooser.js +0 -42
- package/ui/FileSelector/UrlChooser.d.ts +0 -8
- package/ui/FileSelector/UrlChooser.js +0 -19
- package/ui/FileSelector/index.d.ts +0 -1
- package/ui/FileSelector/index.js +0 -8
- package/ui/HoverMenu.js +0 -50
- package/ui/Icons.js +0 -23
- package/ui/LoadingEllipses.js +0 -35
- package/ui/Logo.js +0 -46
- package/ui/Menu.d.ts +0 -54
- package/ui/Menu.js +0 -233
- package/ui/MenuButton.d.ts +0 -10
- package/ui/MenuButton.js +0 -28
- package/ui/PrerenderedCanvas.d.ts +0 -10
- package/ui/PrerenderedCanvas.js +0 -34
- package/ui/RedErrorMessageBox.js +0 -19
- package/ui/ResizeHandle.js +0 -72
- package/ui/ReturnToImportFormDialog.js +0 -18
- package/ui/SanitizedHTML.js +0 -67
- package/ui/Snackbar.d.ts +0 -10
- package/ui/Snackbar.js +0 -49
- package/ui/SnackbarContents.d.ts +0 -5
- package/ui/SnackbarContents.js +0 -16
- package/ui/SnackbarModel.d.ts +0 -17
- package/ui/SnackbarModel.js +0 -96
- package/ui/colors.js +0 -78
- package/ui/hooks.d.ts +0 -66
- package/ui/hooks.js +0 -185
- package/ui/index.d.ts +0 -19
- package/ui/index.js +0 -56
- package/ui/react-colorful.d.ts +0 -17
- package/ui/react-colorful.js +0 -466
- package/ui/theme.d.ts +0 -59
- package/ui/theme.js +0 -381
- package/ui/useEvent.js +0 -47
- package/util/Base1DUtils.d.ts +0 -38
- package/util/Base1DUtils.js +0 -198
- package/util/Base1DViewModel.d.ts +0 -61
- package/util/Base1DViewModel.js +0 -135
- package/util/QuickLRU.d.ts +0 -32
- package/util/QuickLRU.js +0 -237
- package/util/TimeTraveller.d.ts +0 -19
- package/util/TimeTraveller.js +0 -90
- package/util/aborting.js +0 -48
- package/util/analytics.js +0 -86
- package/util/blobToDataURL.js +0 -17
- package/util/blockTypes.d.ts +0 -58
- package/util/blockTypes.js +0 -110
- package/util/calculateDynamicBlocks.d.ts +0 -3
- package/util/calculateDynamicBlocks.js +0 -100
- package/util/calculateStaticBlocks.d.ts +0 -13
- package/util/calculateStaticBlocks.js +0 -102
- package/util/cluster.d.ts +0 -17
- package/util/cluster.js +0 -102
- package/util/color/cssColorsLevel4.js +0 -160
- package/util/color/index.d.ts +0 -5
- package/util/color/index.js +0 -48
- package/util/colord.d.ts +0 -1
- package/util/colord.js +0 -13
- package/util/compositeMap.js +0 -61
- package/util/convertCodingSequenceToPeptides.d.ts +0 -6
- package/util/convertCodingSequenceToPeptides.js +0 -12
- package/util/dedupe.js +0 -15
- package/util/fetchSeq.d.ts +0 -8
- package/util/fetchSeq.js +0 -27
- package/util/flatbush/index.d.ts +0 -25
- package/util/flatbush/index.js +0 -362
- package/util/flatqueue/index.js +0 -66
- package/util/formatFastaStrings.js +0 -12
- package/util/idMaker.js +0 -24
- package/util/index.d.ts +0 -274
- package/util/index.js +0 -1052
- package/util/io/RemoteFileWithRangeCache.js +0 -76
- package/util/io/index.d.ts +0 -7
- package/util/io/index.js +0 -103
- package/util/jexl.d.ts +0 -4
- package/util/jexl.js +0 -55
- package/util/jexlStrings.js +0 -23
- package/util/layouts/BaseLayout.d.ts +0 -30
- package/util/layouts/BaseLayout.js +0 -2
- package/util/layouts/GranularRectLayout.d.ts +0 -37
- package/util/layouts/GranularRectLayout.js +0 -343
- package/util/layouts/MultiLayout.d.ts +0 -12
- package/util/layouts/MultiLayout.js +0 -42
- package/util/layouts/PrecomputedLayout.d.ts +0 -30
- package/util/layouts/PrecomputedLayout.js +0 -75
- package/util/layouts/PrecomputedMultiLayout.d.ts +0 -4
- package/util/layouts/PrecomputedMultiLayout.js +0 -21
- package/util/layouts/SceneGraph.js +0 -115
- package/util/layouts/index.d.ts +0 -7
- package/util/layouts/index.js +0 -31
- package/util/makeAbortableReaction.d.ts +0 -2
- package/util/makeAbortableReaction.js +0 -50
- package/util/map-obj.d.ts +0 -3
- package/util/map-obj.js +0 -37
- package/util/mst-reflection.d.ts +0 -11
- package/util/mst-reflection.js +0 -62
- package/util/nanoid.d.ts +0 -5
- package/util/nanoid.js +0 -43
- package/util/nextTick.js +0 -6
- package/util/offscreenCanvasPonyfill.d.ts +0 -7
- package/util/offscreenCanvasPonyfill.js +0 -65
- package/util/offscreenCanvasUtils.d.ts +0 -28
- package/util/offscreenCanvasUtils.js +0 -99
- package/util/parseLineByLine.js +0 -25
- package/util/range.js +0 -26
- package/util/rxjs.d.ts +0 -3
- package/util/rxjs.js +0 -21
- package/util/simpleFeature.d.ts +0 -44
- package/util/simpleFeature.js +0 -82
- package/util/stats.d.ts +0 -21
- package/util/stats.js +0 -78
- package/util/stopToken.d.ts +0 -3
- package/util/stopToken.js +0 -29
- package/util/tracks.d.ts +0 -55
- package/util/tracks.js +0 -168
- package/util/types/index.d.ts +0 -254
- package/util/types/index.js +0 -172
- package/util/types/mst.d.ts +0 -107
- package/util/types/mst.js +0 -72
- package/util/types/util.d.ts +0 -6
- package/util/types/util.js +0 -2
- package/util/useFeatureSequence.d.ts +0 -19
- package/util/useFeatureSequence.js +0 -90
- package/util/useMeasure.js +0 -33
- package/util/when.js +0 -5
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/ArrayValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/BasicValue.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/DataGridDetails.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/FieldName.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/SimpleField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/UriField.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/BaseFeatureDetail/util.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/consts.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +0 -0
- /package/{BaseFeatureWidget → esm/BaseFeatureWidget}/SequenceFeatureDetails/util.d.ts +0 -0
- /package/{PhasedScheduler.d.ts → esm/PhasedScheduler.d.ts} +0 -0
- /package/{ReExports → esm/ReExports}/BaseFeatureDetails.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/DataGrid.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/MuiDataGridReExports.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/lazify.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/list.d.ts +0 -0
- /package/{ReExports → esm/ReExports}/modules.d.ts +0 -0
- /package/{data_adapters → esm/data_adapters}/util.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/PluggableElementBase.d.ts +0 -0
- /package/{pluggableElementTypes → esm/pluggableElementTypes}/renderers/util/serializableFilterChain.d.ts +0 -0
- /package/{ui → esm/ui}/BaseTooltip.d.ts +0 -0
- /package/{ui → esm/ui}/ColorPicker.d.ts +0 -0
- /package/{ui → esm/ui}/ConfirmDialog.d.ts +0 -0
- /package/{ui → esm/ui}/DraggableDialog.d.ts +0 -0
- /package/{ui → esm/ui}/EditableTypography.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessage.d.ts +0 -0
- /package/{ui → esm/ui}/ErrorMessageStackTraceDialog.d.ts +0 -0
- /package/{ui → esm/ui}/ExternalLink.d.ts +0 -0
- /package/{ui → esm/ui}/FactoryResetDialog.d.ts +0 -0
- /package/{ui → esm/ui}/FatalErrorDialog.d.ts +0 -0
- /package/{ui → esm/ui}/HoverMenu.d.ts +0 -0
- /package/{ui → esm/ui}/Icons.d.ts +0 -0
- /package/{ui → esm/ui}/LoadingEllipses.d.ts +0 -0
- /package/{ui → esm/ui}/Logo.d.ts +0 -0
- /package/{ui → esm/ui}/RedErrorMessageBox.d.ts +0 -0
- /package/{ui → esm/ui}/ResizeHandle.d.ts +0 -0
- /package/{ui → esm/ui}/ReturnToImportFormDialog.d.ts +0 -0
- /package/{ui → esm/ui}/SanitizedHTML.d.ts +0 -0
- /package/{ui → esm/ui}/colors.d.ts +0 -0
- /package/{ui → esm/ui}/useEvent.d.ts +0 -0
- /package/{util → esm/util}/aborting.d.ts +0 -0
- /package/{util → esm/util}/analytics.d.ts +0 -0
- /package/{util → esm/util}/blobToDataURL.d.ts +0 -0
- /package/{util → esm/util}/color/cssColorsLevel4.d.ts +0 -0
- /package/{util → esm/util}/compositeMap.d.ts +0 -0
- /package/{util → esm/util}/dedupe.d.ts +0 -0
- /package/{util → esm/util}/flatqueue/index.d.ts +0 -0
- /package/{util → esm/util}/formatFastaStrings.d.ts +0 -0
- /package/{util → esm/util}/idMaker.d.ts +0 -0
- /package/{util → esm/util}/io/RemoteFileWithRangeCache.d.ts +0 -0
- /package/{util → esm/util}/jexlStrings.d.ts +0 -0
- /package/{util → esm/util}/layouts/SceneGraph.d.ts +0 -0
- /package/{util → esm/util}/nextTick.d.ts +0 -0
- /package/{util → esm/util}/parseLineByLine.d.ts +0 -0
- /package/{util → esm/util}/range.d.ts +0 -0
- /package/{util → esm/util}/useMeasure.d.ts +0 -0
- /package/{util → esm/util}/when.d.ts +0 -0
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import type { ConfigSlotDefinition } from './configurationSlot';
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export type { AnyConfigurationModel, AnyConfigurationSchemaType, AnyConfigurationSlot, AnyConfigurationSlotType, } from './types';
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export interface ConfigurationSchemaDefinition {
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[n: string]: ConfigSlotDefinition | ConfigurationSchemaDefinition | string | number | IAnyType;
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export interface ConfigurationSchemaOptions<BASE_SCHEMA extends AnyConfigurationSchemaType | undefined, EXPLICIT_IDENTIFIER extends string | undefined> {
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implicitIdentifier?: string | boolean;
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baseConfiguration?: BASE_SCHEMA;
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declare function makeConfigurationSchemaModel<DEFINITION extends ConfigurationSchemaDefinition, OPTIONS extends ConfigurationSchemaOptions<any, any>>(modelName: string, schemaDefinition: DEFINITION, options: OPTIONS): import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<Record<string, any>, {
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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export interface ConfigurationSchemaType<DEFINITION extends ConfigurationSchemaDefinition, OPTIONS extends ConfigurationSchemaOptions<any, any>> extends ReturnType<typeof makeConfigurationSchemaModel<DEFINITION, OPTIONS>> {
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}
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export declare function ConfigurationSchema<DEFINITION extends ConfigurationSchemaDefinition, OPTIONS extends ConfigurationSchemaOptions<BASE_SCHEMA, EXPLICIT_IDENTIFIER>, BASE_SCHEMA extends AnyConfigurationSchemaType | undefined = undefined, EXPLICIT_IDENTIFIER extends string | undefined = undefined>(modelName: string, inputSchemaDefinition: DEFINITION, inputOptions?: ConfigurationSchemaOptions<BASE_SCHEMA, EXPLICIT_IDENTIFIER>): ConfigurationSchemaType<DEFINITION, OPTIONS>;
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export declare function ConfigurationReference<SCHEMATYPE extends AnyConfigurationSchemaType>(schemaType: SCHEMATYPE): SCHEMATYPE;
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exports.ConfigurationSchema = ConfigurationSchema;
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exports.ConfigurationReference = ConfigurationReference;
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function preprocessConfigurationSchemaArguments(modelName, inputSchemaDefinition, inputOptions = {}) {
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function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
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options,
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function ConfigurationSchema(modelName, inputSchemaDefinition, inputOptions) {
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import type { IAnyComplexType, IAnyModelType } from 'mobx-state-tree';
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export interface ConfigSlotDefinition {
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description?: string;
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model?: IAnyModelType | IAnyComplexType;
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type: string;
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defaultValue: any;
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contextVariable?: string[];
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}
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export default function ConfigSlot(slotName: string, { description, model, type, defaultValue, contextVariable, }: ConfigSlotDefinition): import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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name: import("mobx-state-tree").ISimpleType<string>;
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description: import("mobx-state-tree").ISimpleType<string>;
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type: import("mobx-state-tree").ISimpleType<string>;
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value: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ITypeUnion<any, any, any>, [undefined]>;
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}, {
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contextVariable: string[];
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} & {
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readonly isCallback: boolean;
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} & {
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readonly expr: any;
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} & {
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set(newVal: any): void;
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convertToValue(): void;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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description: import("mobx-state-tree").ISimpleType<string>;
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type: import("mobx-state-tree").ISimpleType<string>;
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value: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ITypeUnion<any, any, any>, [undefined]>;
|
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}>>, any>, [undefined]>;
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@@ -1,241 +0,0 @@
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"use strict";
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|
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Object.defineProperty(exports, "__esModule", { value: true });
|
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exports.default = ConfigSlot;
|
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|
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const mobx_state_tree_1 = require("mobx-state-tree");
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const util_1 = require("../util");
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const jexlStrings_1 = require("../util/jexlStrings");
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|
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const mst_1 = require("../util/types/mst");
|
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function isValidColorString() {
|
|
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|
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return true;
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|
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}
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const typeModels = {
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stringArray: mobx_state_tree_1.types.array(mobx_state_tree_1.types.string),
|
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|
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numberMap: mobx_state_tree_1.types.map(mobx_state_tree_1.types.number),
|
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|
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boolean: mobx_state_tree_1.types.boolean,
|
|
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|
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color: mobx_state_tree_1.types.refinement('Color', mobx_state_tree_1.types.string, isValidColorString),
|
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|
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integer: mobx_state_tree_1.types.integer,
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number: mobx_state_tree_1.types.number,
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string: mobx_state_tree_1.types.string,
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text: mobx_state_tree_1.types.string,
|
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|
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fileLocation: mst_1.FileLocation,
|
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|
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frozen: mobx_state_tree_1.types.frozen(),
|
|
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|
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};
|
|
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|
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const fallbackDefaults = {
|
|
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|
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stringArray: [],
|
|
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|
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stringArrayMap: {},
|
|
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|
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numberMap: {},
|
|
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|
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boolean: true,
|
|
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|
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color: 'black',
|
|
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|
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integer: 1,
|
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number: 1,
|
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|
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string: '',
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|
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text: '',
|
|
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|
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fileLocation: { uri: '/path/to/resource.txt', locationType: 'UriLocation' },
|
|
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|
-
frozen: {},
|
|
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|
-
};
|
|
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|
-
const literalJSON = (self) => ({
|
|
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|
-
views: {
|
|
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|
-
get valueJSON() {
|
|
40
|
-
return self.value;
|
|
41
|
-
},
|
|
42
|
-
},
|
|
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|
-
});
|
|
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|
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const objectJSON = (self) => ({
|
|
45
|
-
views: {
|
|
46
|
-
get valueJSON() {
|
|
47
|
-
return JSON.stringify(self.value);
|
|
48
|
-
},
|
|
49
|
-
},
|
|
50
|
-
});
|
|
51
|
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const typeModelExtensions = {
|
|
52
|
-
fileLocation: objectJSON,
|
|
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|
-
number: literalJSON,
|
|
54
|
-
integer: literalJSON,
|
|
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|
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boolean: literalJSON,
|
|
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|
-
frozen: objectJSON,
|
|
57
|
-
stringArray: (self) => ({
|
|
58
|
-
views: {
|
|
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|
-
get valueJSON() {
|
|
60
|
-
return JSON.stringify(self.value);
|
|
61
|
-
},
|
|
62
|
-
},
|
|
63
|
-
actions: {
|
|
64
|
-
add(val) {
|
|
65
|
-
self.value.push(val);
|
|
66
|
-
},
|
|
67
|
-
removeAtIndex(idx) {
|
|
68
|
-
self.value.splice(idx, 1);
|
|
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|
-
},
|
|
70
|
-
setAtIndex(idx, val) {
|
|
71
|
-
self.value[idx] = val;
|
|
72
|
-
},
|
|
73
|
-
},
|
|
74
|
-
}),
|
|
75
|
-
stringArrayMap: (self) => ({
|
|
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|
-
views: {
|
|
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|
-
get valueJSON() {
|
|
78
|
-
return JSON.stringify(self.value);
|
|
79
|
-
},
|
|
80
|
-
},
|
|
81
|
-
actions: {
|
|
82
|
-
add(key, val) {
|
|
83
|
-
self.value.set(key, val);
|
|
84
|
-
},
|
|
85
|
-
remove(key) {
|
|
86
|
-
self.value.delete(key);
|
|
87
|
-
},
|
|
88
|
-
addToKey(key, val) {
|
|
89
|
-
const ar = self.value.get(key);
|
|
90
|
-
if (!ar) {
|
|
91
|
-
throw new Error(`${key} not found`);
|
|
92
|
-
}
|
|
93
|
-
ar.push(val);
|
|
94
|
-
},
|
|
95
|
-
removeAtKeyIndex(key, idx) {
|
|
96
|
-
const ar = self.value.get(key);
|
|
97
|
-
if (!ar) {
|
|
98
|
-
throw new Error(`${key} not found`);
|
|
99
|
-
}
|
|
100
|
-
ar.splice(idx, 1);
|
|
101
|
-
},
|
|
102
|
-
setAtKeyIndex(key, idx, val) {
|
|
103
|
-
const ar = self.value.get(key);
|
|
104
|
-
if (!ar) {
|
|
105
|
-
throw new Error(`${key} not found`);
|
|
106
|
-
}
|
|
107
|
-
ar[idx] = val;
|
|
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|
-
},
|
|
109
|
-
},
|
|
110
|
-
}),
|
|
111
|
-
numberMap: (self) => ({
|
|
112
|
-
views: {
|
|
113
|
-
get valueJSON() {
|
|
114
|
-
return JSON.stringify(self.value);
|
|
115
|
-
},
|
|
116
|
-
},
|
|
117
|
-
actions: {
|
|
118
|
-
add(key, val) {
|
|
119
|
-
self.value.set(key, val);
|
|
120
|
-
},
|
|
121
|
-
remove(key) {
|
|
122
|
-
self.value.delete(key);
|
|
123
|
-
},
|
|
124
|
-
},
|
|
125
|
-
}),
|
|
126
|
-
};
|
|
127
|
-
const JexlStringType = mobx_state_tree_1.types.refinement('JexlString', mobx_state_tree_1.types.string, str => str.startsWith('jexl:'));
|
|
128
|
-
function json(value) {
|
|
129
|
-
return (value === null || value === void 0 ? void 0 : value.toJSON) ? value.toJSON() : `"${value}"`;
|
|
130
|
-
}
|
|
131
|
-
function ConfigSlot(slotName, { description = '', model, type, defaultValue, contextVariable = [], }) {
|
|
132
|
-
if (!type) {
|
|
133
|
-
throw new Error('type name required');
|
|
134
|
-
}
|
|
135
|
-
if (!model) {
|
|
136
|
-
model = typeModels[type];
|
|
137
|
-
}
|
|
138
|
-
if (!model) {
|
|
139
|
-
throw new Error(`no builtin config slot type "${type}", and no 'model' param provided`);
|
|
140
|
-
}
|
|
141
|
-
if (defaultValue === undefined) {
|
|
142
|
-
throw new Error("no 'defaultValue' provided");
|
|
143
|
-
}
|
|
144
|
-
const configSlotModelName = `${slotName
|
|
145
|
-
.charAt(0)
|
|
146
|
-
.toUpperCase()}${slotName.slice(1)}ConfigSlot`;
|
|
147
|
-
let slot = mobx_state_tree_1.types
|
|
148
|
-
.model(configSlotModelName, {
|
|
149
|
-
name: mobx_state_tree_1.types.literal(slotName),
|
|
150
|
-
description: mobx_state_tree_1.types.literal(description),
|
|
151
|
-
type: mobx_state_tree_1.types.literal(type),
|
|
152
|
-
value: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.union(JexlStringType, model), defaultValue),
|
|
153
|
-
})
|
|
154
|
-
.volatile(() => ({
|
|
155
|
-
contextVariable,
|
|
156
|
-
}))
|
|
157
|
-
.views(self => ({
|
|
158
|
-
get isCallback() {
|
|
159
|
-
return String(self.value).startsWith('jexl:');
|
|
160
|
-
},
|
|
161
|
-
}))
|
|
162
|
-
.views(self => ({
|
|
163
|
-
get expr() {
|
|
164
|
-
if (self.isCallback) {
|
|
165
|
-
const { pluginManager } = (0, util_1.getEnv)(self);
|
|
166
|
-
if (!pluginManager && typeof jest === 'undefined') {
|
|
167
|
-
console.warn('no pluginManager detected on config env (if you dynamically instantiate a config, for example in renderProps for your display model, check that you add the env argument)');
|
|
168
|
-
}
|
|
169
|
-
return (0, jexlStrings_1.stringToJexlExpression)(String(self.value), pluginManager === null || pluginManager === void 0 ? void 0 : pluginManager.jexl);
|
|
170
|
-
}
|
|
171
|
-
return { evalSync: () => self.value };
|
|
172
|
-
},
|
|
173
|
-
get valueJSON() {
|
|
174
|
-
if (self.isCallback) {
|
|
175
|
-
return undefined;
|
|
176
|
-
}
|
|
177
|
-
return json(self.value);
|
|
178
|
-
},
|
|
179
|
-
}))
|
|
180
|
-
.preProcessSnapshot(val => typeof val === 'object' && val.name === slotName
|
|
181
|
-
? val
|
|
182
|
-
: {
|
|
183
|
-
name: slotName,
|
|
184
|
-
description,
|
|
185
|
-
type,
|
|
186
|
-
value: val,
|
|
187
|
-
})
|
|
188
|
-
.postProcessSnapshot(snap => {
|
|
189
|
-
if (typeof snap.value === 'object') {
|
|
190
|
-
return JSON.stringify(snap.value) !== JSON.stringify(defaultValue)
|
|
191
|
-
? snap.value
|
|
192
|
-
: undefined;
|
|
193
|
-
}
|
|
194
|
-
return snap.value !== defaultValue ? snap.value : undefined;
|
|
195
|
-
})
|
|
196
|
-
.actions(self => ({
|
|
197
|
-
set(newVal) {
|
|
198
|
-
self.value = newVal;
|
|
199
|
-
},
|
|
200
|
-
reset() {
|
|
201
|
-
self.value = defaultValue;
|
|
202
|
-
},
|
|
203
|
-
convertToCallback() {
|
|
204
|
-
if (self.isCallback) {
|
|
205
|
-
return;
|
|
206
|
-
}
|
|
207
|
-
self.value = `jexl:${self.valueJSON || "''"}`;
|
|
208
|
-
},
|
|
209
|
-
convertToValue() {
|
|
210
|
-
if (!self.isCallback) {
|
|
211
|
-
return;
|
|
212
|
-
}
|
|
213
|
-
try {
|
|
214
|
-
const funcResult = self.expr.evalSync();
|
|
215
|
-
if (funcResult !== undefined) {
|
|
216
|
-
self.value = funcResult;
|
|
217
|
-
return;
|
|
218
|
-
}
|
|
219
|
-
}
|
|
220
|
-
catch (e) {
|
|
221
|
-
}
|
|
222
|
-
self.value = defaultValue;
|
|
223
|
-
if (!(type in fallbackDefaults)) {
|
|
224
|
-
throw new Error(`no fallbackDefault defined for type ${type}`);
|
|
225
|
-
}
|
|
226
|
-
self.value = fallbackDefaults[type];
|
|
227
|
-
},
|
|
228
|
-
}));
|
|
229
|
-
if (typeModelExtensions[type]) {
|
|
230
|
-
slot = slot.extend(typeModelExtensions[type]);
|
|
231
|
-
}
|
|
232
|
-
const completeModel = mobx_state_tree_1.types.optional(slot, {
|
|
233
|
-
name: slotName,
|
|
234
|
-
type,
|
|
235
|
-
description,
|
|
236
|
-
value: defaultValue,
|
|
237
|
-
});
|
|
238
|
-
const m = completeModel;
|
|
239
|
-
Object.defineProperty(m, 'isJBrowseConfigurationSlot', { value: true });
|
|
240
|
-
return m;
|
|
241
|
-
}
|
package/configuration/index.d.ts
DELETED
package/configuration/index.js
DELETED
|
@@ -1,21 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
-
if (k2 === undefined) k2 = k;
|
|
4
|
-
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
-
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
-
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
-
}
|
|
8
|
-
Object.defineProperty(o, k2, desc);
|
|
9
|
-
}) : (function(o, m, k, k2) {
|
|
10
|
-
if (k2 === undefined) k2 = k;
|
|
11
|
-
o[k2] = m[k];
|
|
12
|
-
}));
|
|
13
|
-
var __exportStar = (this && this.__exportStar) || function(m, exports) {
|
|
14
|
-
for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
|
|
15
|
-
};
|
|
16
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
17
|
-
exports.ConfigurationSchema = exports.ConfigurationReference = void 0;
|
|
18
|
-
var configurationSchema_1 = require("./configurationSchema");
|
|
19
|
-
Object.defineProperty(exports, "ConfigurationReference", { enumerable: true, get: function () { return configurationSchema_1.ConfigurationReference; } });
|
|
20
|
-
Object.defineProperty(exports, "ConfigurationSchema", { enumerable: true, get: function () { return configurationSchema_1.ConfigurationSchema; } });
|
|
21
|
-
__exportStar(require("./util"), exports);
|
package/configuration/types.d.ts
DELETED
|
@@ -1,14 +0,0 @@
|
|
|
1
|
-
import type { ConfigurationSchemaOptions, ConfigurationSchemaType } from './configurationSchema';
|
|
2
|
-
import type ConfigSlot from './configurationSlot';
|
|
3
|
-
import type { IStateTreeNode, Instance, SnapshotOut } from 'mobx-state-tree';
|
|
4
|
-
export type GetOptions<SCHEMA> = SCHEMA extends ConfigurationSchemaType<any, infer OPTIONS> ? OPTIONS : never;
|
|
5
|
-
export type GetBase<SCHEMA> = SCHEMA extends undefined ? never : GetOptions<SCHEMA> extends ConfigurationSchemaOptions<undefined, any> ? undefined : GetOptions<SCHEMA> extends ConfigurationSchemaOptions<infer BASE extends AnyConfigurationSchemaType, any> ? BASE : never;
|
|
6
|
-
export type GetExplicitIdentifier<SCHEMA> = GetOptions<SCHEMA> extends ConfigurationSchemaOptions<any, infer EXPLICIT_IDENTIFIER extends string> ? EXPLICIT_IDENTIFIER : never;
|
|
7
|
-
export type ConfigurationSchemaForModel<MODEL> = MODEL extends IStateTreeNode<infer SCHEMA extends AnyConfigurationSchemaType> ? SCHEMA : never;
|
|
8
|
-
export type ConfigurationSlotName<SCHEMA> = SCHEMA extends undefined ? never : SCHEMA extends ConfigurationSchemaType<infer D, any> ? (keyof D & string) | GetExplicitIdentifier<SCHEMA> | (GetBase<SCHEMA> extends ConfigurationSchemaType<any, any> ? ConfigurationSlotName<GetBase<SCHEMA>> : never) : never;
|
|
9
|
-
export type AnyConfigurationSchemaType = ConfigurationSchemaType<any, any>;
|
|
10
|
-
export type AnyConfigurationModel = Instance<AnyConfigurationSchemaType>;
|
|
11
|
-
export type AnyConfigurationSlotType = ReturnType<typeof ConfigSlot>;
|
|
12
|
-
export type AnyConfigurationSlot = Instance<AnyConfigurationSlotType>;
|
|
13
|
-
export type AnyConfiguration = AnyConfigurationModel | SnapshotOut<AnyConfigurationModel>;
|
|
14
|
-
export type ConfigurationModel<SCHEMA extends AnyConfigurationSchemaType> = Instance<SCHEMA>;
|
package/configuration/types.js
DELETED
package/configuration/util.d.ts
DELETED
|
@@ -1,10 +0,0 @@
|
|
|
1
|
-
import type { AnyConfigurationModel, AnyConfigurationSchemaType, ConfigurationSchemaForModel, ConfigurationSlotName } from './types';
|
|
2
|
-
export declare function readConfObject<CONFMODEL extends AnyConfigurationModel>(confObject: CONFMODEL, slotPath?: ConfigurationSlotName<ConfigurationSchemaForModel<CONFMODEL>> | string[], args?: Record<string, unknown>): any;
|
|
3
|
-
export declare function getConf<CONFMODEL extends AnyConfigurationModel>(model: {
|
|
4
|
-
configuration: CONFMODEL;
|
|
5
|
-
}, slotPath?: Parameters<typeof readConfObject<CONFMODEL>>[1], args?: Parameters<typeof readConfObject<CONFMODEL>>[2]): any;
|
|
6
|
-
export declare function getTypeNamesFromExplicitlyTypedUnion(maybeUnionType: unknown): string[];
|
|
7
|
-
export declare function isBareConfigurationSchemaType(thing: unknown): thing is AnyConfigurationSchemaType;
|
|
8
|
-
export declare function isConfigurationSchemaType(thing: unknown): thing is AnyConfigurationSchemaType;
|
|
9
|
-
export declare function isConfigurationModel(thing: unknown): thing is AnyConfigurationModel;
|
|
10
|
-
export declare function isConfigurationSlotType(thing: unknown): thing is object & Record<"isJBrowseConfigurationSlot", unknown>;
|
package/configuration/util.js
DELETED
|
@@ -1,123 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.readConfObject = readConfObject;
|
|
4
|
-
exports.getConf = getConf;
|
|
5
|
-
exports.getTypeNamesFromExplicitlyTypedUnion = getTypeNamesFromExplicitlyTypedUnion;
|
|
6
|
-
exports.isBareConfigurationSchemaType = isBareConfigurationSchemaType;
|
|
7
|
-
exports.isConfigurationSchemaType = isConfigurationSchemaType;
|
|
8
|
-
exports.isConfigurationModel = isConfigurationModel;
|
|
9
|
-
exports.isConfigurationSlotType = isConfigurationSlotType;
|
|
10
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
11
|
-
const mst_reflection_1 = require("../util/mst-reflection");
|
|
12
|
-
function readConfObject(confObject, slotPath, args = {}) {
|
|
13
|
-
if (!slotPath) {
|
|
14
|
-
return structuredClone((0, mobx_state_tree_1.getSnapshot)(confObject));
|
|
15
|
-
}
|
|
16
|
-
else if (typeof slotPath === 'string') {
|
|
17
|
-
let slot = confObject[slotPath];
|
|
18
|
-
if (!slot &&
|
|
19
|
-
(0, mobx_state_tree_1.isStateTreeNode)(confObject) &&
|
|
20
|
-
(0, mobx_state_tree_1.isMapType)((0, mobx_state_tree_1.getType)(confObject))) {
|
|
21
|
-
slot = confObject.get(slotPath);
|
|
22
|
-
}
|
|
23
|
-
if (!slot) {
|
|
24
|
-
return undefined;
|
|
25
|
-
}
|
|
26
|
-
else {
|
|
27
|
-
const val = slot.expr ? slot.expr.evalSync(args) : slot;
|
|
28
|
-
return (0, mobx_state_tree_1.isStateTreeNode)(val)
|
|
29
|
-
? JSON.parse(JSON.stringify((0, mobx_state_tree_1.getSnapshot)(val)))
|
|
30
|
-
: val;
|
|
31
|
-
}
|
|
32
|
-
}
|
|
33
|
-
else if (Array.isArray(slotPath)) {
|
|
34
|
-
const slotName = slotPath[0];
|
|
35
|
-
if (slotPath.length > 1) {
|
|
36
|
-
const newPath = slotPath.slice(1);
|
|
37
|
-
let subConf = confObject[slotName];
|
|
38
|
-
if (!subConf &&
|
|
39
|
-
(0, mobx_state_tree_1.isStateTreeNode)(confObject) &&
|
|
40
|
-
(0, mobx_state_tree_1.isMapType)((0, mobx_state_tree_1.getType)(confObject))) {
|
|
41
|
-
subConf = confObject.get(slotName);
|
|
42
|
-
}
|
|
43
|
-
return subConf ? readConfObject(subConf, newPath, args) : undefined;
|
|
44
|
-
}
|
|
45
|
-
return readConfObject(confObject, slotName, args);
|
|
46
|
-
}
|
|
47
|
-
throw new TypeError('slotPath must be a string or array');
|
|
48
|
-
}
|
|
49
|
-
function getConf(model, slotPath, args) {
|
|
50
|
-
const { configuration } = model;
|
|
51
|
-
if (isConfigurationModel(configuration)) {
|
|
52
|
-
return readConfObject(configuration, slotPath, args);
|
|
53
|
-
}
|
|
54
|
-
throw new TypeError('cannot getConf on this model, it has no configuration');
|
|
55
|
-
}
|
|
56
|
-
function getTypeNamesFromExplicitlyTypedUnion(maybeUnionType) {
|
|
57
|
-
if ((0, mobx_state_tree_1.isType)(maybeUnionType)) {
|
|
58
|
-
maybeUnionType = (0, mst_reflection_1.resolveLateType)(maybeUnionType);
|
|
59
|
-
if ((0, mobx_state_tree_1.isUnionType)(maybeUnionType)) {
|
|
60
|
-
const typeNames = [];
|
|
61
|
-
for (let type of (0, mst_reflection_1.getUnionSubTypes)(maybeUnionType)) {
|
|
62
|
-
type = (0, mst_reflection_1.resolveLateType)(type);
|
|
63
|
-
let typeName = getTypeNamesFromExplicitlyTypedUnion(type);
|
|
64
|
-
if (!typeName.length) {
|
|
65
|
-
const def = (0, mst_reflection_1.getDefaultValue)(type);
|
|
66
|
-
typeName = [def.type];
|
|
67
|
-
}
|
|
68
|
-
if (!typeName[0]) {
|
|
69
|
-
throw new Error(`invalid config schema type ${type}`);
|
|
70
|
-
}
|
|
71
|
-
typeNames.push(...typeName);
|
|
72
|
-
}
|
|
73
|
-
return typeNames;
|
|
74
|
-
}
|
|
75
|
-
}
|
|
76
|
-
return [];
|
|
77
|
-
}
|
|
78
|
-
function isBareConfigurationSchemaType(thing) {
|
|
79
|
-
if ((0, mobx_state_tree_1.isType)(thing)) {
|
|
80
|
-
if ((0, mobx_state_tree_1.isModelType)(thing) &&
|
|
81
|
-
('isJBrowseConfigurationSchema' in thing ||
|
|
82
|
-
thing.name.includes('ConfigurationSchema'))) {
|
|
83
|
-
return true;
|
|
84
|
-
}
|
|
85
|
-
if ((0, mobx_state_tree_1.isLateType)(thing)) {
|
|
86
|
-
return true;
|
|
87
|
-
}
|
|
88
|
-
}
|
|
89
|
-
return false;
|
|
90
|
-
}
|
|
91
|
-
function isConfigurationSchemaType(thing) {
|
|
92
|
-
if (!(0, mobx_state_tree_1.isType)(thing)) {
|
|
93
|
-
return false;
|
|
94
|
-
}
|
|
95
|
-
else if (isBareConfigurationSchemaType(thing)) {
|
|
96
|
-
return true;
|
|
97
|
-
}
|
|
98
|
-
else if ((0, mobx_state_tree_1.isUnionType)(thing)) {
|
|
99
|
-
return (0, mst_reflection_1.getUnionSubTypes)(thing).every(t => isConfigurationSchemaType(t) || t.name === 'undefined');
|
|
100
|
-
}
|
|
101
|
-
else if ((0, mobx_state_tree_1.isOptionalType)(thing) &&
|
|
102
|
-
isConfigurationSchemaType((0, mst_reflection_1.getSubType)(thing))) {
|
|
103
|
-
return true;
|
|
104
|
-
}
|
|
105
|
-
else if ((0, mobx_state_tree_1.isArrayType)(thing) &&
|
|
106
|
-
isConfigurationSchemaType((0, mst_reflection_1.getSubType)(thing))) {
|
|
107
|
-
return true;
|
|
108
|
-
}
|
|
109
|
-
else if ((0, mobx_state_tree_1.isMapType)(thing) && isConfigurationSchemaType((0, mst_reflection_1.getSubType)(thing))) {
|
|
110
|
-
return true;
|
|
111
|
-
}
|
|
112
|
-
else {
|
|
113
|
-
return false;
|
|
114
|
-
}
|
|
115
|
-
}
|
|
116
|
-
function isConfigurationModel(thing) {
|
|
117
|
-
return (0, mobx_state_tree_1.isStateTreeNode)(thing) && isConfigurationSchemaType((0, mobx_state_tree_1.getType)(thing));
|
|
118
|
-
}
|
|
119
|
-
function isConfigurationSlotType(thing) {
|
|
120
|
-
return (typeof thing === 'object' &&
|
|
121
|
-
thing !== null &&
|
|
122
|
-
'isJBrowseConfigurationSlot' in thing);
|
|
123
|
-
}
|