@jbrowse/core 2.17.0 → 3.0.0

package/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts

@@ -1,79 +1,25 @@
-import { Instance } from 'mobx-state-tree';
-import { SimpleFeatureSerialized } from '../../util';
+import type { SimpleFeatureSerialized } from '../../util';
+import type { Instance } from 'mobx-state-tree';
 export declare function SequenceFeatureDetailsF(): import("mobx-state-tree").IModelType<{}, {
-    /**
-     * #volatile
-     */
     showCoordinatesSetting: string;
-    /**
-     * #volatile
-     */
     intronBp: number;
-    /**
-     * #volatile
-     */
     upDownBp: number;
-    /**
-     * #volatile
-     */
     upperCaseCDS: boolean;
-    /**
-     * #volatile
-     */
     charactersPerRow: number;
-    /**
-     * #volatile
-     */
     feature: SimpleFeatureSerialized | undefined;
-    /**
-     * #volatile
-     */
     mode: string;
 } & {
-    /**
-     * #action
-     */
     setFeature(f: SimpleFeatureSerialized): void;
-    /**
-     * #action
-     */
     setUpDownBp(f: number): void;
-    /**
-     * #action
-     */
     setIntronBp(f: number): void;
-    /**
-     * #action
-     */
     setUpperCaseCDS(f: boolean): void;
-    /**
-     * #action
-     */
     setShowCoordinates(f: "none" | "relative" | "genomic"): void;
-    /**
-     * #action
-     */
     setMode(mode: string): void;
 } & {
-    /**
-     * #getter
-     */
     readonly showCoordinates: boolean;
-    /**
-     * #getter
-     */
     readonly showGenomicCoordsOption: boolean;
-    /**
-     * #getter
-     */
     readonly hasCDS: boolean | undefined;
-    /**
-     * #getter
-     */
     readonly hasExon: boolean | undefined;
-    /**
-     * #getter
-     */
     readonly hasExonOrCDS: boolean | undefined;
 } & {
     afterAttach(): void;

package/BaseFeatureWidget/SequenceFeatureDetails/model.js

@@ -1,17 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SequenceFeatureDetailsF = SequenceFeatureDetailsF;
-const mobx_state_tree_1 = require("mobx-state-tree");
 const mobx_1 = require("mobx");
-// locals
+const mobx_state_tree_1 = require("mobx-state-tree");
 const util_1 = require("../../util");
-function localStorageGetNumber(key, defaultVal) {
-    var _a;
-    return +((_a = (0, util_1.localStorageGetItem)(key)) !== null && _a !== void 0 ? _a : defaultVal);
-}
-function localStorageGetBoolean(key, defaultVal) {
-    return Boolean(JSON.parse((0, util_1.localStorageGetItem)(key) || JSON.stringify(defaultVal)));
-}
 function localStorageSetNumber(key, value) {
     (0, util_1.localStorageSetItem)(key, JSON.stringify(value));
 }
@@ -23,106 +15,52 @@ function SequenceFeatureDetailsF() {
     return mobx_state_tree_1.types
         .model('SequenceFeatureDetails')
         .volatile(() => ({
-        /**
-         * #volatile
-         */
         showCoordinatesSetting: (0, util_1.localStorageGetItem)(`${p}-showCoordinatesSetting`) || 'none',
-        /**
-         * #volatile
-         */
-        intronBp: localStorageGetNumber(`${p}-intronBp`, 10),
-        /**
-         * #volatile
-         */
-        upDownBp: localStorageGetNumber(`${p}-upDownBp`, 100),
-        /**
-         * #volatile
-         */
-        upperCaseCDS: localStorageGetBoolean(`${p}-upperCaseCDS`, true),
-        /**
-         * #volatile
-         */
+        intronBp: (0, util_1.localStorageGetNumber)(`${p}-intronBp`, 10),
+        upDownBp: (0, util_1.localStorageGetNumber)(`${p}-upDownBp`, 100),
+        upperCaseCDS: (0, util_1.localStorageGetBoolean)(`${p}-upperCaseCDS`, true),
         charactersPerRow: 100,
-        /**
-         * #volatile
-         */
         feature: undefined,
-        /**
-         * #volatile
-         */
         mode: '',
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         setFeature(f) {
             self.feature = f;
         },
-        /**
-         * #action
-         */
         setUpDownBp(f) {
             self.upDownBp = f;
         },
-        /**
-         * #action
-         */
         setIntronBp(f) {
             self.intronBp = f;
         },
-        /**
-         * #action
-         */
         setUpperCaseCDS(f) {
             self.upperCaseCDS = f;
         },
-        /**
-         * #action
-         */
         setShowCoordinates(f) {
             self.showCoordinatesSetting = f;
         },
-        /**
-         * #action
-         */
         setMode(mode) {
             self.mode = mode;
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get showCoordinates() {
             return self.showCoordinatesSetting !== 'none';
         },
-        /**
-         * #getter
-         */
         get showGenomicCoordsOption() {
             return (self.mode === 'gene' ||
                 self.mode === 'gene_updownstream' ||
                 self.mode === 'genomic' ||
                 self.mode === 'genomic_sequence_updownstream');
         },
-        /**
-         * #getter
-         */
         get hasCDS() {
             var _a, _b;
             return (_b = (_a = self.feature) === null || _a === void 0 ? void 0 : _a.subfeatures) === null || _b === void 0 ? void 0 : _b.some(sub => sub.type === 'CDS');
         },
-        /**
-         * #getter
-         */
         get hasExon() {
             var _a, _b;
             return (_b = (_a = self.feature) === null || _a === void 0 ? void 0 : _a.subfeatures) === null || _b === void 0 ? void 0 : _b.some(sub => sub.type === 'exon');
         },
-        /**
-         * #getter
-         */
         get hasExonOrCDS() {
             return this.hasExon || this.hasCDS;
         },

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { Feat } from '../../util';
-import { SequenceFeatureDetailsModel } from '../model';
-import { SimpleFeatureSerialized } from '../../../util';
+import type { SimpleFeatureSerialized } from '../../../util';
+import type { Feat } from '../../util';
+import type { SequenceFeatureDetailsModel } from '../model';
 declare const CDNASequence: ({ utr, cds, exons, sequence, upstream, downstream, feature, includeIntrons, collapseIntron, model, }: {
     utr: Feat[];
     cds: Feat[];
@@ -13,5 +12,5 @@ declare const CDNASequence: ({ utr, cds, exons, sequence, upstream, downstream,
     includeIntrons?: boolean;
     collapseIntron?: boolean;
     model: SequenceFeatureDetailsModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default CDNASequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const mobx_react_1 = require("mobx-react");
 const util_1 = require("../util");
 const SequenceDisplay_1 = __importDefault(require("./SequenceDisplay"));
@@ -31,7 +31,7 @@ const CDNASequence = (0, mobx_react_1.observer)(function ({ utr, cds, exons, seq
             charactersPerRow,
             showCoordinates,
         });
-        upstreamChunk = (react_1.default.createElement(SequenceDisplay_1.default, { model: model, color: util_1.updownstreamColor, strand: mult, start: currStart, coordStart: coordStart, chunks: segments }));
+        upstreamChunk = ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: util_1.updownstreamColor, strand: mult, start: currStart, coordStart: coordStart, chunks: segments }));
         currRemainder = remainder;
         currStart = currStart + upstream.length * mult;
         coordStart = coordStart + upstream.length * mult;
@@ -51,7 +51,7 @@ const CDNASequence = (0, mobx_react_1.observer)(function ({ utr, cds, exons, seq
             currRemainder,
             showCoordinates,
         });
-        middleChunks.push(react_1.default.createElement(SequenceDisplay_1.default, { key: `${JSON.stringify(chunk)}-mid`, model: model, color: chunk.type === 'CDS' ? util_1.cdsColor : util_1.utrColor, strand: mult, start: currStart, coordStart: coordStart, chunks: segments }));
+        middleChunks.push((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: chunk.type === 'CDS' ? util_1.cdsColor : util_1.utrColor, strand: mult, start: currStart, coordStart: coordStart, chunks: segments }, `${JSON.stringify(chunk)}-mid`));
         currRemainder = remainder;
         currStart = currStart + s.length * mult;
         coordStart = coordStart + s.length * mult;
@@ -66,7 +66,7 @@ const CDNASequence = (0, mobx_react_1.observer)(function ({ utr, cds, exons, seq
                 showCoordinates,
             });
             if (segments.length) {
-                middleChunks.push(react_1.default.createElement(SequenceDisplay_1.default, { key: `${JSON.stringify(chunk)}-intron`, model: model, strand: mult, coordStart: coordStart, start: currStart, chunks: segments }));
+                middleChunks.push((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, strand: mult, coordStart: coordStart, start: currStart, chunks: segments }, `${JSON.stringify(chunk)}-intron`));
                 currRemainder = remainder;
                 currStart = currStart + str.length * mult;
                 coordStart = coordStart + str.length * mult;
@@ -81,11 +81,8 @@ const CDNASequence = (0, mobx_react_1.observer)(function ({ utr, cds, exons, seq
             currRemainder,
             showCoordinates,
         });
-        downstreamChunk = (react_1.default.createElement(SequenceDisplay_1.default, { start: currStart, model: model, strand: mult, chunks: segments, coordStart: coordStart, color: util_1.updownstreamColor }));
+        downstreamChunk = ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { start: currStart, model: model, strand: mult, chunks: segments, coordStart: coordStart, color: util_1.updownstreamColor }));
     }
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        upstreamChunk,
-        middleChunks,
-        downstreamChunk));
+    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [upstreamChunk, middleChunks, downstreamChunk] }));
 });
 exports.default = CDNASequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts

@@ -1,9 +1,8 @@
-import React from 'react';
-import { Feat } from '../../util';
-import { SequenceFeatureDetailsModel } from '../model';
+import type { Feat } from '../../util';
+import type { SequenceFeatureDetailsModel } from '../model';
 declare const CDSSequence: ({ cds, sequence, model, }: {
     cds: Feat[];
     sequence: string;
     model: SequenceFeatureDetailsModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default CDSSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js

@@ -3,19 +3,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const mobx_react_1 = require("mobx-react");
-// locals
-const util_1 = require("../util");
-const util_2 = require("../../util");
+const util_1 = require("../../util");
+const util_2 = require("../util");
 const SequenceDisplay_1 = __importDefault(require("./SequenceDisplay"));
 const CDSSequence = (0, mobx_react_1.observer)(function ({ cds, sequence, model, }) {
     const { charactersPerRow, showCoordinates } = model;
-    const { segments } = (0, util_1.splitString)({
-        str: (0, util_2.stitch)(cds, sequence),
+    const { segments } = (0, util_2.splitString)({
+        str: (0, util_1.stitch)(cds, sequence),
         charactersPerRow,
         showCoordinates,
     });
-    return (react_1.default.createElement(SequenceDisplay_1.default, { model: model, color: util_1.cdsColor, chunks: segments, start: 0 }));
+    return ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: util_2.cdsColor, chunks: segments, start: 0 }));
 });
 exports.default = CDSSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts

@@ -1,11 +1,10 @@
-import React from 'react';
-import { SequenceFeatureDetailsModel } from '../model';
-import { SimpleFeatureSerialized } from '../../../util';
+import type { SimpleFeatureSerialized } from '../../../util';
+import type { SequenceFeatureDetailsModel } from '../model';
 declare const GenomicSequence: ({ sequence, upstream, feature, downstream, model, }: {
     sequence: string;
     feature: SimpleFeatureSerialized;
     upstream?: string;
     downstream?: string;
     model: SequenceFeatureDetailsModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default GenomicSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js

@@ -3,9 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const mobx_react_1 = require("mobx-react");
-// locals
 const util_1 = require("../util");
 const SequenceDisplay_1 = __importDefault(require("./SequenceDisplay"));
 const GenomicSequence = (0, mobx_react_1.observer)(function ({ sequence, upstream, feature, downstream, model, }) {
@@ -27,7 +26,7 @@ const GenomicSequence = (0, mobx_react_1.observer)(function ({ sequence, upstrea
             charactersPerRow,
             showCoordinates,
         });
-        upstreamChunk = (react_1.default.createElement(SequenceDisplay_1.default, { model: model, color: util_1.updownstreamColor, start: currStart, coordStart: coordStart, chunks: segments }));
+        upstreamChunk = ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: util_1.updownstreamColor, start: currStart, coordStart: coordStart, chunks: segments }));
         currRemainder = remainder;
         currStart = currStart + upstream.length * mult;
         coordStart = coordStart + upstream.length * mult;
@@ -38,7 +37,7 @@ const GenomicSequence = (0, mobx_react_1.observer)(function ({ sequence, upstrea
         showCoordinates,
         currRemainder,
     });
-    const middleChunk = (react_1.default.createElement(SequenceDisplay_1.default, { model: model, color: util_1.genomeColor, start: currStart, coordStart: coordStart, chunks: segments }));
+    const middleChunk = ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: util_1.genomeColor, start: currStart, coordStart: coordStart, chunks: segments }));
     currRemainder = remainder;
     currStart += sequence.length * mult;
     coordStart = coordStart + sequence.length * mult;
@@ -50,11 +49,8 @@ const GenomicSequence = (0, mobx_react_1.observer)(function ({ sequence, upstrea
             currRemainder,
             showCoordinates,
         });
-        downstreamChunk = (react_1.default.createElement(SequenceDisplay_1.default, { start: currStart, model: model, chunks: segments, coordStart: coordStart, color: util_1.updownstreamColor }));
+        downstreamChunk = ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { start: currStart, model: model, chunks: segments, coordStart: coordStart, color: util_1.updownstreamColor }));
     }
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        upstreamChunk,
-        middleChunk,
-        downstreamChunk));
+    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [upstreamChunk, middleChunk, downstreamChunk] }));
 });
 exports.default = GenomicSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts

@@ -1,10 +1,9 @@
-import React from 'react';
-import { Feat } from '../../util';
-import { SequenceFeatureDetailsModel } from '../model';
+import type { Feat } from '../../util';
+import type { SequenceFeatureDetailsModel } from '../model';
 declare const ProteinSequence: ({ cds, sequence, codonTable, model, }: {
     cds: Feat[];
     sequence: string;
     codonTable: Record<string, string>;
     model: SequenceFeatureDetailsModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default ProteinSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js

@@ -3,9 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const mobx_react_1 = require("mobx-react");
-// locals
 const util_1 = require("../../util");
 const util_2 = require("../util");
 const SequenceDisplay_1 = __importDefault(require("./SequenceDisplay"));
@@ -14,7 +13,6 @@ const ProteinSequence = (0, mobx_react_1.observer)(function ({ cds, sequence, co
     const str = (0, util_1.stitch)(cds, sequence);
     let protein = '';
     for (let i = 0; i < str.length; i += 3) {
-        // use & symbol for undefined codon, or partial slice
         protein += codonTable[str.slice(i, i + 3)] || '&';
     }
     const { segments } = (0, util_2.splitString)({
@@ -22,6 +20,6 @@ const ProteinSequence = (0, mobx_react_1.observer)(function ({ cds, sequence, co
         charactersPerRow,
         showCoordinates,
     });
-    return (react_1.default.createElement(SequenceDisplay_1.default, { model: model, color: util_2.proteinColor, chunks: segments, start: 0 }));
+    return ((0, jsx_runtime_1.jsx)(SequenceDisplay_1.default, { model: model, color: util_2.proteinColor, chunks: segments, start: 0 }));
 });
 exports.default = ProteinSequence;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts

@@ -1,5 +1,4 @@
-import React from 'react';
-import { SequenceFeatureDetailsModel } from '../model';
+import type { SequenceFeatureDetailsModel } from '../model';
 declare const SequenceDisplay: ({ chunks, start, color, strand, coordStart, model, }: {
     chunks: string[];
     start: number;
@@ -7,5 +6,5 @@ declare const SequenceDisplay: ({ chunks, start, color, strand, coordStart, mode
     strand?: number;
     color?: string;
     model: SequenceFeatureDetailsModel;
-}) => React.JSX.Element[];
+}) => import("react/jsx-runtime").JSX.Element[];
 export default SequenceDisplay;

package/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js

@@ -1,9 +1,7 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const mobx_react_1 = require("mobx-react");
 const SequenceDisplay = (0, mobx_react_1.observer)(function ({ chunks, start, color, strand = 1, coordStart = start, model, }) {
     const { charactersPerRow, showCoordinates } = model;
@@ -21,12 +19,7 @@ const SequenceDisplay = (0, mobx_react_1.observer)(function ({ chunks, start, co
             : showCoordinates
                 ? ' \n'
                 : '';
-        return (
-        /* biome-ignore lint/suspicious/noArrayIndexKey: */
-        react_1.default.createElement(react_1.default.Fragment, { key: `${chunk}-${idx}` },
-            showCoordinates ? prefix : null,
-            react_1.default.createElement("span", { style: { background: color } }, chunk),
-            postfix));
+        return ((0, jsx_runtime_1.jsxs)(react_1.Fragment, { children: [showCoordinates ? prefix : null, (0, jsx_runtime_1.jsx)("span", { style: { background: color }, children: chunk }), postfix] }, `${chunk}-${idx}`));
     });
 });
 exports.default = SequenceDisplay;

package/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts

@@ -0,0 +1,8 @@
+import type { SequenceFeatureDetailsModel } from './model';
+import type { SimpleFeatureSerialized } from '../../util';
+import type { SeqState } from '../util';
+export interface SequencePanelProps {
+    sequence: SeqState;
+    feature: SimpleFeatureSerialized;
+    model: SequenceFeatureDetailsModel;
+}

package/BaseFeatureWidget/SequenceFeatureDetails/types.js

@@ -0,0 +1,2 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });

package/BaseFeatureWidget/SequenceFeatureDetails/util.js

@@ -2,8 +2,6 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.genomeColor = exports.updownstreamColor = exports.cdsColor = exports.proteinColor = exports.utrColor = exports.intronColor = void 0;
 exports.splitString = splitString;
-// note that these are currently put into the style section instead of being
-// defined in classes to aid copy and paste to an external document e.g. word
 exports.intronColor = undefined;
 exports.utrColor = 'rgb(200,240,240)';
 exports.proteinColor = 'rgb(220,160,220)';
@@ -26,8 +24,6 @@ function splitString({ str, charactersPerRow, showCoordinates, currRemainder = 0
         if (showCoordinates) {
             let res = '';
             for (let i = 0, j = splitStart; i < r.length; i++, j++) {
-                // note: this adds a space at the start but it causes trouble to try to
-                // say e.g. j%splitSize==0 && j to try to only add non-zero spaces
                 if (j % splitSize === 0) {
                     res += ' ';
                     j = 0;
@@ -41,7 +37,7 @@ function splitString({ str, charactersPerRow, showCoordinates, currRemainder = 0
         else {
             chunks[iter] = r;
         }
-        splitStart = 0; // after newline, reset
+        splitStart = 0;
         offset += inc;
     }
     return {

package/BaseFeatureWidget/stateModelFactory.d.ts

@@ -1,56 +1,16 @@
-import { Instance } from 'mobx-state-tree';
-import PluginManager from '../PluginManager';
-/**
- * #stateModel BaseFeatureWidget
- * displays data about features, allowing configuration callbacks to modify the
- * contents of what is displayed
- *
- * see: formatDetails-\>feature,formatDetails-\>subfeatures
- */
+import type PluginManager from '../PluginManager';
+import type { Instance } from 'mobx-state-tree';
 export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    /**
-     * #property
-     */
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
-    /**
-     * #property
-     */
     featureData: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     formattedFields: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    /**
-     * #property
-     */
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    /**
-     * #property
-     */
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    /**
-     * #property
-     */
     sequenceFeatureDetails: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{}, {
         showCoordinatesSetting: string;
         intronBp: number;
@@ -76,77 +36,26 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         afterAttach(): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
 }, {
-    /**
-     * #volatile
-     */
     error: unknown;
 } & {
-    /**
-     * #action
-     */
     setFeatureData(featureData: Record<string, unknown>): void;
-    /**
-     * #action
-     */
     clearFeatureData(): void;
-    /**
-     * #action
-     */
     setFormattedData(feat: Record<string, unknown>): void;
-    /**
-     * #action
-     */
     setExtra(type?: string, trackId?: string, maxDepth?: number): void;
-    /**
-     * #action
-     */
     setError(e: unknown): void;
 } & {
     afterCreate(): void;
 }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    /**
-     * #property
-     */
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
-    /**
-     * #property
-     */
     featureData: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     formattedFields: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
-    /**
-     * #property
-     */
     view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    /**
-     * #property
-     */
     track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    /**
-     * #property
-     */
     trackId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     trackType: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     maxDepth: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    /**
-     * #property
-     */
     sequenceFeatureDetails: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{}, {
         showCoordinatesSetting: string;
         intronBp: number;