@jbrowse/core 1.5.9 → 1.6.3

package/Plugin.js

@@ -1,29 +1,31 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 /**
  * base class for a JBrowse plugin
  */
 var Plugin = /*#__PURE__*/function () {
   function Plugin() {
-    (0, _classCallCheck2["default"])(this, Plugin);
-    this.name = void 0;
-    this.url = void 0;
-    this.version = void 0;
-    this.configurationSchema = undefined;
+    (0, _classCallCheck2.default)(this, Plugin);
+    (0, _defineProperty2.default)(this, "name", void 0);
+    (0, _defineProperty2.default)(this, "url", void 0);
+    (0, _defineProperty2.default)(this, "version", void 0);
+    (0, _defineProperty2.default)(this, "configurationSchema", undefined);
   }
 
-  (0, _createClass2["default"])(Plugin, [{
+  (0, _createClass2.default)(Plugin, [{
     key: "install",
     value: function install(_pluginManager) {}
   }, {
@@ -33,4 +35,4 @@ var Plugin = /*#__PURE__*/function () {
   return Plugin;
 }();
 
-exports["default"] = Plugin;
+exports.default = Plugin;

package/PluginLoader.js

@@ -1,28 +1,30 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+var _typeof3 = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = exports.PluginSourceConfigurationSchema = void 0;
+exports.default = exports.PluginSourceConfigurationSchema = void 0;
 exports.isCJSPluginDefinition = isCJSPluginDefinition;
 exports.isESMPluginDefinition = isESMPluginDefinition;
 exports.isUMDPluginDefinition = isUMDPluginDefinition;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _interopRequireWildcard2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/interopRequireWildcard"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
+var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 
 var _loadScript = _interopRequireDefault(require("load-script2"));
 
@@ -34,7 +36,10 @@ var _ReExports = _interopRequireDefault(require("./ReExports"));
 
 var _util = require("./util");
 
-/* global __non_webpack_require__ */
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof3(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
 var PluginSourceConfigurationSchema = (0, _configuration.ConfigurationSchema)('PluginSource', {
   name: {
     type: 'string',
@@ -64,7 +69,7 @@ function getGlobalObject() {
   // https://github.com/purposeindustries/window-or-global/blob/322abc71de0010c9e5d9d0729df40959e1ef8775/lib/index.js
   return (
     /* eslint-disable-next-line no-restricted-globals */
-    (typeof self === "undefined" ? "undefined" : (0, _typeof2["default"])(self)) === 'object' && self.self === self && self || (typeof global === "undefined" ? "undefined" : (0, _typeof2["default"])(global)) === 'object' && global.global === global && global || // @ts-ignore
+    (typeof self === "undefined" ? "undefined" : (0, _typeof2.default)(self)) === 'object' && self.self === self && self || (typeof global === "undefined" ? "undefined" : (0, _typeof2.default)(global)) === 'object' && global.global === global && global || // @ts-ignore
     this
   );
 }
@@ -76,18 +81,18 @@ function isInWebWorker(globalObject) {
 var PluginLoader = /*#__PURE__*/function () {
   function PluginLoader() {
     var pluginDefinitions = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : [];
-    (0, _classCallCheck2["default"])(this, PluginLoader);
-    this.definitions = [];
+    (0, _classCallCheck2.default)(this, PluginLoader);
+    (0, _defineProperty2.default)(this, "definitions", []);
     this.definitions = JSON.parse(JSON.stringify(pluginDefinitions));
   }
 
-  (0, _createClass2["default"])(PluginLoader, [{
+  (0, _createClass2.default)(PluginLoader, [{
     key: "loadScript",
     value: function loadScript(scriptUrl) {
       var globalObject = getGlobalObject();
 
       if (!isInWebWorker(globalObject)) {
-        return (0, _loadScript["default"])(scriptUrl);
+        return (0, _loadScript.default)(scriptUrl);
       } // @ts-ignore
 
 
@@ -110,9 +115,9 @@ var PluginLoader = /*#__PURE__*/function () {
   }, {
     key: "loadCJSPlugin",
     value: function () {
-      var _loadCJSPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(pluginDefinition) {
+      var _loadCJSPlugin = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(pluginDefinition) {
         var parsedUrl, fs, path, os, http, fsPromises, systemTmp, tmpDir, plugin, pluginLocation, pluginLocationRelative, pluginDownload;
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -155,7 +160,7 @@ var PluginLoader = /*#__PURE__*/function () {
                 tmpDir = _context.sent;
                 plugin = undefined;
                 _context.prev = 22;
-                pluginLocation = path.join(tmpDir, (0, _sanitizeFilename["default"])(parsedUrl.href));
+                pluginLocation = path.join(tmpDir, (0, _sanitizeFilename.default)(parsedUrl.href));
                 pluginLocationRelative = path.relative('.', pluginLocation);
                 pluginDownload = new Promise(function (resolve, reject) {
                   var file = fs.createWriteStream(pluginLocation);
@@ -210,9 +215,9 @@ var PluginLoader = /*#__PURE__*/function () {
   }, {
     key: "loadESMPlugin",
     value: function () {
-      var _loadESMPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(pluginDefinition) {
+      var _loadESMPlugin = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(pluginDefinition) {
         var parsedUrl, plugin;
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -240,7 +245,7 @@ var PluginLoader = /*#__PURE__*/function () {
                 return Promise.resolve("".concat(
                 /* webpackIgnore: true */
                 parsedUrl.href)).then(function (s) {
-                  return (0, _interopRequireWildcard2["default"])(require(s));
+                  return _interopRequireWildcard(require(s));
                 });
 
               case 12:
@@ -273,9 +278,9 @@ var PluginLoader = /*#__PURE__*/function () {
   }, {
     key: "loadUMDPlugin",
     value: function () {
-      var _loadUMDPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(pluginDefinition) {
+      var _loadUMDPlugin = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(pluginDefinition) {
         var umdUrl, parsedUrl, moduleName, umdName, globalObject, plugin;
-        return _regenerator["default"].wrap(function _callee3$(_context3) {
+        return _regenerator.default.wrap(function _callee3$(_context3) {
           while (1) {
             switch (_context3.prev = _context3.next) {
               case 0:
@@ -337,9 +342,9 @@ var PluginLoader = /*#__PURE__*/function () {
   }, {
     key: "loadPlugin",
     value: function () {
-      var _loadPlugin = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(definition) {
+      var _loadPlugin = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(definition) {
         var plugin;
-        return _regenerator["default"].wrap(function _callee4$(_context4) {
+        return _regenerator.default.wrap(function _callee4$(_context4) {
           while (1) {
             switch (_context4.prev = _context4.next) {
               case 0:
@@ -396,7 +401,7 @@ var PluginLoader = /*#__PURE__*/function () {
                 throw new Error("Could not determine plugin type: ".concat(JSON.stringify(definition)));
 
               case 23:
-                return _context4.abrupt("return", plugin["default"]);
+                return _context4.abrupt("return", plugin.default);
 
               case 24:
               case "end":
@@ -416,8 +421,8 @@ var PluginLoader = /*#__PURE__*/function () {
     key: "installGlobalReExports",
     value: function installGlobalReExports(target) {
       // @ts-ignore
-      target.JBrowseExports = Object.fromEntries(Object.entries(_ReExports["default"]).map(function (_ref) {
-        var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
+      target.JBrowseExports = Object.fromEntries(Object.entries(_ReExports.default).map(function (_ref) {
+        var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
             moduleName = _ref2[0],
             module = _ref2[1];
 
@@ -427,16 +432,16 @@ var PluginLoader = /*#__PURE__*/function () {
   }, {
     key: "load",
     value: function () {
-      var _load = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6() {
+      var _load = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6() {
         var _this = this;
 
-        return _regenerator["default"].wrap(function _callee6$(_context6) {
+        return _regenerator.default.wrap(function _callee6$(_context6) {
           while (1) {
             switch (_context6.prev = _context6.next) {
               case 0:
                 return _context6.abrupt("return", Promise.all(this.definitions.map( /*#__PURE__*/function () {
-                  var _ref3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(definition) {
-                    return _regenerator["default"].wrap(function _callee5$(_context5) {
+                  var _ref3 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(definition) {
+                    return _regenerator.default.wrap(function _callee5$(_context5) {
                       while (1) {
                         switch (_context5.prev = _context5.next) {
                           case 0:
@@ -482,4 +487,4 @@ var PluginLoader = /*#__PURE__*/function () {
   return PluginLoader;
 }();
 
-exports["default"] = PluginLoader;
+exports.default = PluginLoader;

package/PluginManager.d.ts

@@ -232,11 +232,6 @@ export default class PluginManager {
             readonly maxOffset: number;
             readonly minOffset: number;
             readonly totalBp: number;
-            bpToPx({ refName, coord, regionNumber, }: {
-                refName: string;
-                coord: number;
-                regionNumber?: number | undefined;
-            }): number | undefined;
             pxToBp(px: number): {
                 oob: boolean;
                 coord: number;
@@ -261,6 +256,11 @@ export default class PluginManager {
             readonly dynamicBlocks: import("./util/blockTypes").BlockSet;
             readonly staticBlocks: import("./util/blockTypes").BlockSet;
             readonly currBp: number;
+            bpToPx({ refName, coord, regionNumber, }: {
+                refName: string;
+                coord: number;
+                regionNumber?: number | undefined;
+            }): number | undefined;
         } & {
             setFeatures(features: import("./util/simpleFeature").Feature[]): void;
             zoomToDisplayedRegions(leftPx: import("./util/Base1DViewModel").BpOffset | undefined, rightPx: import("./util/Base1DViewModel").BpOffset | undefined): void;
@@ -269,6 +269,8 @@ export default class PluginManager {
             zoomOut(): void;
             zoomIn(): void;
             zoomTo(newBpPerPx: number, offset?: number): void;
+            scrollTo(offsetPx: number): number;
+            centerAt(bp: number, refName: string, regionIndex: number): void;
             scroll(distance: number): number;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
         '@jbrowse/core/util/io': typeof import("./util/io");
@@ -310,5 +312,6 @@ export default class PluginManager {
     addInternetAccountType(creationCallback: (pluginManager: PluginManager) => InternetAccountType): this;
     addToExtensionPoint<T>(extensionPointName: string, callback: (extendee: T) => T): void;
     evaluateExtensionPoint(extensionPointName: string, extendee: unknown): unknown;
+    evaluateAsyncExtensionPoint(extensionPointName: string, extendee: unknown): Promise<unknown>;
 }
 export {};

package/PluginManager.js

@@ -1,21 +1,25 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _createForOfIteratorHelper2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createForOfIteratorHelper"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -49,13 +53,19 @@ var _CorePlugin = _interopRequireDefault(require("./CorePlugin"));
 
 var _jexl = _interopRequireDefault(require("./util/jexl"));
 
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
+
+function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
+
+function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
+
 /** little helper class that keeps groups of callbacks that are
 then run in a specified order by group */
 var PhasedScheduler = /*#__PURE__*/function () {
   function PhasedScheduler() {
-    (0, _classCallCheck2["default"])(this, PhasedScheduler);
-    this.phaseCallbacks = new Map();
-    this.phaseOrder = [];
+    (0, _classCallCheck2.default)(this, PhasedScheduler);
+    (0, _defineProperty2.default)(this, "phaseCallbacks", new Map());
+    (0, _defineProperty2.default)(this, "phaseOrder", []);
 
     for (var _len = arguments.length, phaseOrder = new Array(_len), _key = 0; _key < _len; _key++) {
       phaseOrder[_key] = arguments[_key];
@@ -64,7 +74,7 @@ var PhasedScheduler = /*#__PURE__*/function () {
     this.phaseOrder = phaseOrder;
   }
 
-  (0, _createClass2["default"])(PhasedScheduler, [{
+  (0, _createClass2.default)(PhasedScheduler, [{
     key: "add",
     value: function add(phase, callback) {
       if (!this.phaseOrder.includes(phase)) {
@@ -102,13 +112,13 @@ var PhasedScheduler = /*#__PURE__*/function () {
 /** internal class that holds the info for a certain element type */
 var TypeRecord = /*#__PURE__*/function () {
   function TypeRecord(typeName, baseClass) {
-    (0, _classCallCheck2["default"])(this, TypeRecord);
+    (0, _classCallCheck2.default)(this, TypeRecord);
     this.typeName = typeName;
     this.baseClass = baseClass;
-    this.registeredTypes = {};
+    (0, _defineProperty2.default)(this, "registeredTypes", {});
   }
 
-  (0, _createClass2["default"])(TypeRecord, [{
+  (0, _createClass2.default)(TypeRecord, [{
     key: "add",
     value: function add(name, t) {
       this.registeredTypes[name] = t;
@@ -143,37 +153,35 @@ var PluginManager = /*#__PURE__*/function () {
     var _this2 = this;
 
     var initialPlugins = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : [];
-    (0, _classCallCheck2["default"])(this, PluginManager);
-    this.plugins = [];
-    this.jexl = (0, _jexl["default"])();
-    this.pluginMetadata = {};
-    this.runtimePluginDefinitions = [];
-    this.elementCreationSchedule = new PhasedScheduler('renderer', 'adapter', 'text search adapter', 'display', 'track', 'connection', 'view', 'widget', 'rpc method', 'internet account');
-    this.rendererTypes = new TypeRecord('RendererType', _RendererType["default"]);
-    this.adapterTypes = new TypeRecord('AdapterType', _AdapterType["default"]);
-    this.textSearchAdapterTypes = new TypeRecord('TextSearchAdapterType', _TextSearchAdapterType["default"]);
-    this.trackTypes = new TypeRecord('TrackType', _TrackType["default"]);
-    this.displayTypes = new TypeRecord('DisplayType', _DisplayType["default"]);
-    this.connectionTypes = new TypeRecord('ConnectionType', _ConnectionType["default"]);
-    this.viewTypes = new TypeRecord('ViewType', _ViewType["default"]);
-    this.widgetTypes = new TypeRecord('WidgetType', _WidgetType["default"]);
-    this.rpcMethods = new TypeRecord('RpcMethodType', _RpcMethodType["default"]);
-    this.internetAccountTypes = new TypeRecord('InternetAccountType', _InternetAccountType["default"]);
-    this.configured = false;
-    this.rootModel = void 0;
-    this.extensionPoints = new Map();
-    this.jbrequireCache = new Map();
-    this.lib = _ReExports["default"];
-
-    this.load = function (lib) {
+    (0, _classCallCheck2.default)(this, PluginManager);
+    (0, _defineProperty2.default)(this, "plugins", []);
+    (0, _defineProperty2.default)(this, "jexl", (0, _jexl.default)());
+    (0, _defineProperty2.default)(this, "pluginMetadata", {});
+    (0, _defineProperty2.default)(this, "runtimePluginDefinitions", []);
+    (0, _defineProperty2.default)(this, "elementCreationSchedule", new PhasedScheduler('renderer', 'adapter', 'text search adapter', 'display', 'track', 'connection', 'view', 'widget', 'rpc method', 'internet account'));
+    (0, _defineProperty2.default)(this, "rendererTypes", new TypeRecord('RendererType', _RendererType.default));
+    (0, _defineProperty2.default)(this, "adapterTypes", new TypeRecord('AdapterType', _AdapterType.default));
+    (0, _defineProperty2.default)(this, "textSearchAdapterTypes", new TypeRecord('TextSearchAdapterType', _TextSearchAdapterType.default));
+    (0, _defineProperty2.default)(this, "trackTypes", new TypeRecord('TrackType', _TrackType.default));
+    (0, _defineProperty2.default)(this, "displayTypes", new TypeRecord('DisplayType', _DisplayType.default));
+    (0, _defineProperty2.default)(this, "connectionTypes", new TypeRecord('ConnectionType', _ConnectionType.default));
+    (0, _defineProperty2.default)(this, "viewTypes", new TypeRecord('ViewType', _ViewType.default));
+    (0, _defineProperty2.default)(this, "widgetTypes", new TypeRecord('WidgetType', _WidgetType.default));
+    (0, _defineProperty2.default)(this, "rpcMethods", new TypeRecord('RpcMethodType', _RpcMethodType.default));
+    (0, _defineProperty2.default)(this, "internetAccountTypes", new TypeRecord('InternetAccountType', _InternetAccountType.default));
+    (0, _defineProperty2.default)(this, "configured", false);
+    (0, _defineProperty2.default)(this, "rootModel", void 0);
+    (0, _defineProperty2.default)(this, "extensionPoints", new Map());
+    (0, _defineProperty2.default)(this, "jbrequireCache", new Map());
+    (0, _defineProperty2.default)(this, "lib", _ReExports.default);
+    (0, _defineProperty2.default)(this, "load", function (lib) {
       if (!_this2.jbrequireCache.has(lib)) {
         _this2.jbrequireCache.set(lib, lib(_this2));
       }
 
       return _this2.jbrequireCache.get(lib);
-    };
-
-    this.jbrequire = function (lib // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    });
+    (0, _defineProperty2.default)(this, "jbrequire", function (lib // eslint-disable-next-line @typescript-eslint/no-explicit-any
     ) {
       if (typeof lib === 'string') {
         var pack = _this2.lib[lib];
@@ -189,16 +197,15 @@ var PluginManager = /*#__PURE__*/function () {
         return _this2.load(lib);
       }
 
-      if (lib["default"]) {
-        return _this2.jbrequire(lib["default"]);
+      if (lib.default) {
+        return _this2.jbrequire(lib.default);
       }
 
       throw new TypeError('lib passed to jbrequire must be either a string or a function');
-    };
-
+    });
     // add the core plugin
     this.addPlugin({
-      plugin: new _CorePlugin["default"](),
+      plugin: new _CorePlugin.default(),
       metadata: {
         isCore: true
       }
@@ -209,7 +216,7 @@ var PluginManager = /*#__PURE__*/function () {
     });
   }
 
-  (0, _createClass2["default"])(PluginManager, [{
+  (0, _createClass2.default)(PluginManager, [{
     key: "pluginConfigurationSchemas",
     value: function pluginConfigurationSchemas() {
       var configurationSchemas = {};
@@ -227,8 +234,8 @@ var PluginManager = /*#__PURE__*/function () {
         throw new Error('JBrowse already configured, cannot add plugins');
       }
 
-      var _ref = load instanceof _Plugin["default"] ? [load, {}] : [load.plugin, load.metadata],
-          _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
+      var _ref = load instanceof _Plugin.default ? [load, {}] : [load.plugin, load.metadata],
+          _ref2 = (0, _slicedToArray2.default)(_ref, 2),
           plugin = _ref2[0],
           _ref2$ = _ref2[1],
           metadata = _ref2$ === void 0 ? {} : _ref2$;
@@ -377,7 +384,7 @@ var PluginManager = /*#__PURE__*/function () {
   }, {
     key: "pluggableMstType",
     value: function pluggableMstType(typeGroup, fieldName) {
-      var fallback = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : _mobxStateTree.types.maybe(_mobxStateTree.types["null"]);
+      var fallback = arguments.length > 2 && arguments[2] !== undefined ? arguments[2] : _mobxStateTree.types.maybe(_mobxStateTree.types.null);
       var pluggableTypes = this.getElementTypeRecord(typeGroup).all() // @ts-ignore
       .map(function (t) {
         return t[fieldName];
@@ -391,7 +398,7 @@ var PluginManager = /*#__PURE__*/function () {
         return fallback;
       }
 
-      return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2["default"])(pluggableTypes));
+      return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2.default)(pluggableTypes));
     }
     /** get a MST type for the union of all specified pluggable config schemas */
 
@@ -410,7 +417,7 @@ var PluginManager = /*#__PURE__*/function () {
         pluggableTypes.push((0, _configuration.ConfigurationSchema)('Null', {}));
       }
 
-      return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2["default"])(pluggableTypes));
+      return _mobxStateTree.types.union.apply(_mobxStateTree.types, (0, _toConsumableArray2.default)(pluggableTypes));
     }
   }, {
     key: "getRendererType",
@@ -568,7 +575,7 @@ var PluginManager = /*#__PURE__*/function () {
       var accumulator = extendee;
 
       if (callbacks) {
-        var _iterator = (0, _createForOfIteratorHelper2["default"])(callbacks),
+        var _iterator = _createForOfIteratorHelper(callbacks),
             _step;
 
         try {
@@ -590,8 +597,90 @@ var PluginManager = /*#__PURE__*/function () {
 
       return accumulator;
     }
+  }, {
+    key: "evaluateAsyncExtensionPoint",
+    value: function () {
+      var _evaluateAsyncExtensionPoint = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(extensionPointName, extendee) {
+        var callbacks, accumulator, _iterator2, _step2, callback;
+
+        return _regenerator.default.wrap(function _callee$(_context) {
+          while (1) {
+            switch (_context.prev = _context.next) {
+              case 0:
+                callbacks = this.extensionPoints.get(extensionPointName);
+                accumulator = extendee;
+
+                if (!callbacks) {
+                  _context.next = 27;
+                  break;
+                }
+
+                _iterator2 = _createForOfIteratorHelper(callbacks);
+                _context.prev = 4;
+
+                _iterator2.s();
+
+              case 6:
+                if ((_step2 = _iterator2.n()).done) {
+                  _context.next = 19;
+                  break;
+                }
+
+                callback = _step2.value;
+                _context.prev = 8;
+                _context.next = 11;
+                return callback(accumulator);
+
+              case 11:
+                accumulator = _context.sent;
+                _context.next = 17;
+                break;
+
+              case 14:
+                _context.prev = 14;
+                _context.t0 = _context["catch"](8);
+                console.error(_context.t0);
+
+              case 17:
+                _context.next = 6;
+                break;
+
+              case 19:
+                _context.next = 24;
+                break;
+
+              case 21:
+                _context.prev = 21;
+                _context.t1 = _context["catch"](4);
+
+                _iterator2.e(_context.t1);
+
+              case 24:
+                _context.prev = 24;
+
+                _iterator2.f();
+
+                return _context.finish(24);
+
+              case 27:
+                return _context.abrupt("return", accumulator);
+
+              case 28:
+              case "end":
+                return _context.stop();
+            }
+          }
+        }, _callee, this, [[4, 21, 24, 27], [8, 14]]);
+      }));
+
+      function evaluateAsyncExtensionPoint(_x, _x2) {
+        return _evaluateAsyncExtensionPoint.apply(this, arguments);
+      }
+
+      return evaluateAsyncExtensionPoint;
+    }()
   }]);
   return PluginManager;
 }();
 
-exports["default"] = PluginManager;
+exports.default = PluginManager;

package/ReExports/index.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _modules = _interopRequireDefault(require("./modules"));
 
-var _default = _modules["default"];
-exports["default"] = _default;
+var _default = _modules.default;
+exports.default = _default;

package/ReExports/list.js

@@ -3,6 +3,6 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 var _default = ['mobx', 'mobx-state-tree', 'react', 'react-dom', 'mobx-react', 'prop-types', '@material-ui/core', '@material-ui/core/SvgIcon', '@material-ui/core/utils', '@material-ui/lab', '@mui/x-data-grid', '@jbrowse/core/Plugin', '@jbrowse/core/pluggableElementTypes', '@jbrowse/core/pluggableElementTypes/ViewType', '@jbrowse/core/pluggableElementTypes/AdapterType', '@jbrowse/core/pluggableElementTypes/DisplayType', '@jbrowse/core/pluggableElementTypes/TrackType', '@jbrowse/core/pluggableElementTypes/WidgetType', '@jbrowse/core/pluggableElementTypes/models', '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType', '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType', '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType', '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType', '@jbrowse/core/pluggableElementTypes/renderers/RendererType', '@jbrowse/core/configuration', '@jbrowse/core/util/types/mst', '@jbrowse/core/ui', '@jbrowse/core/util', '@jbrowse/core/util/color', '@jbrowse/core/util/layouts', '@jbrowse/core/util/tracks', '@jbrowse/core/util/Base1DViewModel', '@jbrowse/core/util/io', '@jbrowse/core/util/mst-reflection', '@jbrowse/core/util/rxjs', '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail', '@jbrowse/core/data_adapters/BaseAdapter'];
-exports["default"] = _default;
+exports.default = _default;