@jbrowse/core 1.5.9 → 1.6.0

package/util/offscreenCanvasPonyfill.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -9,17 +9,19 @@ exports.createImageBitmap = exports.createCanvas = exports.PonyfillOffscreenCont
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
+var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
+var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
 var _react = _interopRequireDefault(require("react"));
 
@@ -39,12 +41,12 @@ var ImageBitmapType;
 exports.ImageBitmapType = ImageBitmapType;
 var weHave = {
   realOffscreenCanvas: typeof OffscreenCanvas === 'function',
-  node: _detectNode["default"]
+  node: _detectNode.default
 };
 
 var PonyfillOffscreenContext = /*#__PURE__*/function () {
   function PonyfillOffscreenContext(width, height) {
-    (0, _classCallCheck2["default"])(this, PonyfillOffscreenContext);
+    (0, _classCallCheck2.default)(this, PonyfillOffscreenContext);
     this.width = width;
     this.height = height;
     this.commands = [];
@@ -52,7 +54,7 @@ var PonyfillOffscreenContext = /*#__PURE__*/function () {
   } // setters (no getters working)
 
 
-  (0, _createClass2["default"])(PonyfillOffscreenContext, [{
+  (0, _createClass2.default)(PonyfillOffscreenContext, [{
     key: "strokeStyle",
     set: function set(style) {
       if (style !== this.currentStrokeStyle) {
@@ -480,7 +482,7 @@ var PonyfillOffscreenContext = /*#__PURE__*/function () {
 exports.PonyfillOffscreenContext = PonyfillOffscreenContext;
 
 function splitColor(color) {
-  var fill = (0, _color["default"])(color);
+  var fill = (0, _color.default)(color);
   return {
     hex: fill.hex(),
     opacity: fill.alpha()
@@ -561,12 +563,12 @@ function parseFont(font) {
 
 var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
   function PonyfillOffscreenCanvas(width, height) {
-    (0, _classCallCheck2["default"])(this, PonyfillOffscreenCanvas);
+    (0, _classCallCheck2.default)(this, PonyfillOffscreenCanvas);
     this.width = width;
     this.height = height;
   }
 
-  (0, _createClass2["default"])(PonyfillOffscreenCanvas, [{
+  (0, _createClass2.default)(PonyfillOffscreenCanvas, [{
     key: "getContext",
     value: function getContext(type) {
       if (type !== '2d') {
@@ -616,7 +618,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
         }
 
         if (command.type === 'fillRect') {
-          var _command$args = (0, _slicedToArray2["default"])(command.args, 4),
+          var _command$args = (0, _slicedToArray2.default)(command.args, 4),
               x = _command$args[0],
               y = _command$args[1],
               w = _command$args[2],
@@ -628,7 +630,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
 
           var ny = Math.min(y, y + h);
           var nh = Math.abs(h);
-          nodes.push( /*#__PURE__*/_react["default"].createElement("rect", {
+          nodes.push( /*#__PURE__*/_react.default.createElement("rect", {
             key: index,
             fill: hex,
             fillOpacity: opacity !== 1 ? opacity : undefined,
@@ -640,7 +642,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
         }
 
         if (command.type === 'fillText') {
-          var _command$args2 = (0, _slicedToArray2["default"])(command.args, 3),
+          var _command$args2 = (0, _slicedToArray2.default)(command.args, 3),
               text = _command$args2[0],
               _x = _command$args2[1],
               _y = _command$args2[2];
@@ -649,7 +651,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
               _hex = _splitColor2.hex,
               _opacity = _splitColor2.opacity;
 
-          nodes.push( /*#__PURE__*/_react["default"].createElement("text", Object.assign({
+          nodes.push( /*#__PURE__*/_react.default.createElement("text", (0, _extends2.default)({
             key: index,
             fill: _hex,
             fillOpacity: _opacity !== 1 ? _opacity : undefined,
@@ -677,12 +679,12 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
         if (command.type === 'fill') {
           var _Path;
 
-          var path = (_Path = (0, _svgPathGenerator["default"])()).moveTo.apply(_Path, (0, _toConsumableArray2["default"])(currentPath[0]));
+          var path = (_Path = (0, _svgPathGenerator.default)()).moveTo.apply(_Path, (0, _toConsumableArray2.default)(currentPath[0]));
 
           for (var i = 1; i < currentPath.length; i++) {
             var _path;
 
-            path = (_path = path).lineTo.apply(_path, (0, _toConsumableArray2["default"])(currentPath[i]));
+            path = (_path = path).lineTo.apply(_path, (0, _toConsumableArray2.default)(currentPath[i]));
           }
 
           path.end();
@@ -691,7 +693,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
               _hex2 = _splitColor3.hex,
               _opacity2 = _splitColor3.opacity;
 
-          nodes.push( /*#__PURE__*/_react["default"].createElement("path", {
+          nodes.push( /*#__PURE__*/_react.default.createElement("path", {
             key: index,
             fill: _hex2,
             d: path,
@@ -702,12 +704,12 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
         if (command.type === 'stroke') {
           var _Path2;
 
-          var _path2 = (_Path2 = (0, _svgPathGenerator["default"])()).moveTo.apply(_Path2, (0, _toConsumableArray2["default"])(currentPath[0]));
+          var _path2 = (_Path2 = (0, _svgPathGenerator.default)()).moveTo.apply(_Path2, (0, _toConsumableArray2.default)(currentPath[0]));
 
           for (var _i = 1; _i < currentPath.length; _i++) {
             var _path3;
 
-            _path2 = (_path3 = _path2).lineTo.apply(_path3, (0, _toConsumableArray2["default"])(currentPath[_i]));
+            _path2 = (_path3 = _path2).lineTo.apply(_path3, (0, _toConsumableArray2.default)(currentPath[_i]));
           }
 
           _path2.end();
@@ -716,7 +718,7 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
               _hex3 = _splitColor4.hex,
               _opacity3 = _splitColor4.opacity;
 
-          nodes.push( /*#__PURE__*/_react["default"].createElement("path", {
+          nodes.push( /*#__PURE__*/_react.default.createElement("path", {
             key: index,
             fill: "none",
             stroke: _hex3,
@@ -729,9 +731,9 @@ var PonyfillOffscreenCanvas = /*#__PURE__*/function () {
           rotation = command.args[0] * 180 / Math.PI;
         }
       });
-      return rotation ? /*#__PURE__*/_react["default"].createElement("g", {
+      return rotation ? /*#__PURE__*/_react.default.createElement("g", {
         transform: "rotate(".concat(rotation, ")")
-      }, [].concat(nodes)) : /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, [].concat(nodes));
+      }, [].concat(nodes)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, [].concat(nodes));
     }
   }]);
   return PonyfillOffscreenCanvas;
@@ -755,11 +757,11 @@ if (weHave.realOffscreenCanvas) {
   exports.createCanvas = createCanvas = nodeCreateCanvas;
 
   exports.createImageBitmap = createImageBitmap = /*#__PURE__*/function () {
-    var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(canvas) {
+    var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(canvas) {
       var dataUri,
           img,
           _args = arguments;
-      return _regenerator["default"].wrap(function _callee$(_context) {
+      return _regenerator.default.wrap(function _callee$(_context) {
         while (1) {
           switch (_context.prev = _context.next) {
             case 0:
@@ -805,5 +807,5 @@ if (weHave.realOffscreenCanvas) {
     return canvas.context;
   };
 
-  exports.ImageBitmapType = ImageBitmapType = (0, _typeof2["default"])('StringArray');
+  exports.ImageBitmapType = ImageBitmapType = (0, _typeof2.default)('StringArray');
 }

package/util/offscreenCanvasUtils.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -9,7 +9,7 @@ exports.renderToAbstractCanvas = renderToAbstractCanvas;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
 var _react = _interopRequireDefault(require("react"));
 
@@ -22,10 +22,10 @@ function renderToAbstractCanvas(_x, _x2, _x3, _x4) {
 }
 
 function _renderToAbstractCanvas() {
-  _renderToAbstractCanvas = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(width, height, opts, cb) {
+  _renderToAbstractCanvas = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(width, height, opts, cb) {
     var exportSVG, _opts$highResolutionS, highResolutionScaling, fakeCanvas, fakeCtx, scale, _canvas, _ctx, canvas, ctx;
 
-    return _regenerator["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:
@@ -62,7 +62,7 @@ function _renderToAbstractCanvas() {
             return cb(_ctx);
 
           case 14:
-            _context.t0 = _react["default"];
+            _context.t0 = _react.default;
             _context.t1 = width;
             _context.t2 = height;
 

package/util/range.test.js

@@ -1,64 +1,64 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
 
 var _range = require("./range");
 
 describe('insersection2', function () {
   var testCases = [{
-    "in": [1, 3, 5, 10],
+    in: [1, 3, 5, 10],
     out: []
   }, {
-    "in": [1, 1, 2, 2],
+    in: [1, 1, 2, 2],
     out: []
   }, {
-    "in": [1, 2, 1, 2],
+    in: [1, 2, 1, 2],
     out: [1, 2]
   }, {
-    "in": [1, 3, 2, 4],
+    in: [1, 3, 2, 4],
     out: [2, 3]
   }, {
-    "in": [2, 4, 1, 3],
+    in: [2, 4, 1, 3],
     out: [2, 3]
   }, {
-    "in": [2, 4, 1, 4],
+    in: [2, 4, 1, 4],
     out: [2, 4]
   }, {
-    "in": [1, 4, 2, 4],
+    in: [1, 4, 2, 4],
     out: [2, 4]
   }, {
-    "in": [1, 3, 1, 4],
+    in: [1, 3, 1, 4],
     out: [1, 3]
   }, {
-    "in": [1, 4, 1, 3],
+    in: [1, 4, 1, 3],
     out: [1, 3]
   }, {
-    "in": [2, 3, 1, 2],
+    in: [2, 3, 1, 2],
     out: []
   }, {
-    "in": [1, 2, 2, 3],
+    in: [1, 2, 2, 3],
     out: []
   }, {
-    "in": [1, 1, 1, 1],
+    in: [1, 1, 1, 1],
     out: []
   }, {
-    "in": [1, 1, 1, 2],
+    in: [1, 1, 1, 2],
     out: []
   }, {
-    "in": [1, 2, 1, 1],
+    in: [1, 2, 1, 1],
     out: []
   }, {
-    "in": [1, 3, 2, 2],
+    in: [1, 3, 2, 2],
     out: []
   }, {
-    "in": [2, 2, 1, 3],
+    in: [2, 2, 1, 3],
     out: []
   }];
   testCases.forEach(function (testcase) {
-    test("intersection2(".concat(testcase["in"], ") -> ").concat(testcase.out), function () {
-      expect(_range.intersection2.apply(void 0, (0, _toConsumableArray2["default"])(testcase["in"]))).toEqual(testcase.out);
+    test("intersection2(".concat(testcase.in, ") -> ").concat(testcase.out), function () {
+      expect(_range.intersection2.apply(void 0, (0, _toConsumableArray2.default)(testcase.in))).toEqual(testcase.out);
     });
   });
 });

package/util/rxjs.js

@@ -21,8 +21,8 @@ function ObservableCreate(func, signal) {
     try {
       var ret = func(observer); // catch async errors
 
-      if (ret && ret["catch"]) {
-        ret["catch"](function (error) {
+      if (ret && ret.catch) {
+        ret.catch(function (error) {
           return observer.error(error);
         });
       }

package/util/simpleFeature.js

@@ -1,30 +1,34 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 exports.isFeature = isFeature;
 
-var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/classCallCheck"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/createClass"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/typeof"));
+var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
+
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 /**
  * Abstract feature object
  */
 function isFeature(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && typeof thing.get === 'function' && typeof thing.id === 'function';
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && typeof thing.get === 'function' && typeof thing.id === 'function';
 }
 
 function isSimpleFeatureSerialized(args) {
-  return 'uniqueId' in args && (0, _typeof2["default"])(args.data) !== 'object';
+  return 'uniqueId' in args && (0, _typeof2.default)(args.data) !== 'object';
 }
 /**
  * Simple implementation of a feature object.
@@ -43,11 +47,11 @@ var SimpleFeature = /*#__PURE__*/function () {
   function SimpleFeature(args) {
     var _this = this;
 
-    (0, _classCallCheck2["default"])(this, SimpleFeature);
-    this.data = void 0;
-    this.subfeatures = void 0;
-    this.parentHandle = void 0;
-    this.uniqueId = void 0;
+    (0, _classCallCheck2.default)(this, SimpleFeature);
+    (0, _defineProperty2.default)(this, "data", void 0);
+    (0, _defineProperty2.default)(this, "subfeatures", void 0);
+    (0, _defineProperty2.default)(this, "parentHandle", void 0);
+    (0, _defineProperty2.default)(this, "uniqueId", void 0);
 
     if (isSimpleFeatureSerialized(args)) {
       this.data = args;
@@ -80,7 +84,7 @@ var SimpleFeature = /*#__PURE__*/function () {
       function (f, i) {
         return typeof f.get !== 'function' ? new SimpleFeature({
           id: f.uniqueId || "".concat(id, "-").concat(i),
-          data: (0, _objectSpread2["default"])({
+          data: _objectSpread({
             strand: _this.data.strand
           }, f),
           parent: _this
@@ -95,7 +99,7 @@ var SimpleFeature = /*#__PURE__*/function () {
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
 
 
-  (0, _createClass2["default"])(SimpleFeature, [{
+  (0, _createClass2.default)(SimpleFeature, [{
     key: "get",
     value: function get(name) {
       return name === 'subfeatures' ? this.subfeatures : name === 'parent' ? this.parent() : this.data[name];
@@ -149,9 +153,10 @@ var SimpleFeature = /*#__PURE__*/function () {
   }, {
     key: "toJSON",
     value: function toJSON() {
-      var d = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, this.data), {}, {
+      var d = _objectSpread(_objectSpread({}, this.data), {}, {
         uniqueId: this.id()
       });
+
       var p = this.parent();
 
       if (p) {
@@ -171,10 +176,10 @@ var SimpleFeature = /*#__PURE__*/function () {
   }], [{
     key: "fromJSON",
     value: function fromJSON(json) {
-      return new SimpleFeature((0, _objectSpread2["default"])({}, json));
+      return new SimpleFeature(_objectSpread({}, json));
     }
   }]);
   return SimpleFeature;
 }();
 
-exports["default"] = SimpleFeature;
+exports.default = SimpleFeature;

package/util/simpleFeature.test.js

@@ -1,11 +1,11 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 var _simpleFeature = _interopRequireDefault(require("./simpleFeature"));
 
 test('can create a simple feature', function () {
-  var f = new _simpleFeature["default"]({
+  var f = new _simpleFeature.default({
     uniqueId: 'test',
     start: 100,
     end: 200
@@ -15,7 +15,7 @@ test('can create a simple feature', function () {
   expect(f.get('end')).toEqual(200);
 });
 test('can create a simple with subfeatures', function () {
-  var f = new _simpleFeature["default"]({
+  var f = new _simpleFeature.default({
     uniqueId: 'test',
     start: 100,
     end: 500,

package/util/stats.d.ts

@@ -10,9 +10,9 @@ export interface UnrectifiedFeatureStats {
     basesCovered: number;
 }
 export interface FeatureStats extends UnrectifiedFeatureStats {
+    featureDensity: number;
     scoreMean: number;
     scoreStdDev: number;
-    featureDensity: number;
 }
 export declare function calcStdFromSums(sum: number, sumSquares: number, n: number, population?: boolean): number;
 export declare function rectifyStats(s: UnrectifiedFeatureStats): FeatureStats;

package/util/stats.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -13,12 +13,16 @@ exports.scoresToStats = scoresToStats;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _operators = require("rxjs/operators");
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 /*
  * calculate standard deviation using the 'shortcut method' that accepts
  * the sum and the sum squares of the elements
@@ -58,7 +62,7 @@ function calcStdFromSums(sum, sumSquares, n) {
 
 
 function rectifyStats(s) {
-  return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, s), {}, {
+  return _objectSpread(_objectSpread({}, s), {}, {
     scoreMean: (s.scoreSum || 0) / (s.featureCount || s.basesCovered || 1),
     scoreStdDev: calcStdFromSums(s.scoreSum, s.scoreSumSquares, s.featureCount || s.basesCovered),
     featureDensity: (s.featureCount || 1) / s.basesCovered
@@ -117,10 +121,10 @@ function scoresToStats(_x, _x2) {
 }
 
 function _scoresToStats() {
-  _scoresToStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(region, features) {
+  _scoresToStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(region, features) {
     var start, end, _yield$features$pipe$, scoreMin, scoreMax, scoreSum, scoreSumSquares, featureCount;
 
-    return _regenerator["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:

package/util/stats.test.js

@@ -1,12 +1,12 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
+var _simpleFeature = _interopRequireDefault(require("./simpleFeature"));
 
 var _rxjs = require("rxjs");
 
@@ -45,9 +45,9 @@ test('test rectify', function () {
     scoreSumSquares: 14
   }).scoreStdDev).toEqual(1); // calculated from a webapp about sample standard deviations
 });
-test('scores to stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('scores to stats', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var ret;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
@@ -56,21 +56,21 @@ test('scores to stats', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PU
             refName: 'ctgA',
             start: 0,
             end: 2
-          }, (0, _rxjs.from)([new _simpleFeature["default"]({
+          }, (0, _rxjs.from)([new _simpleFeature.default({
             id: 1,
             data: {
               start: 0,
               end: 1,
               score: 1
             }
-          }), new _simpleFeature["default"]({
+          }), new _simpleFeature.default({
             id: 2,
             data: {
               start: 1,
               end: 2,
               score: 2
             }
-          }), new _simpleFeature["default"]({
+          }), new _simpleFeature.default({
             id: 3,
             data: {
               start: 2,
@@ -101,7 +101,7 @@ test('calc per base stats', function () {
     refName: 'ctgA',
     start: 0,
     end: 9
-  }, [new _simpleFeature["default"]({
+  }, [new _simpleFeature.default({
     id: 1,
     data: {
       start: 0,
@@ -114,14 +114,14 @@ test('calc per base stats', function () {
     refName: 'ctgA',
     start: 0,
     end: 9
-  }, [new _simpleFeature["default"]({
+  }, [new _simpleFeature.default({
     id: 1,
     data: {
       start: 0,
       end: 1,
       score: 10
     }
-  }), new _simpleFeature["default"]({
+  }), new _simpleFeature.default({
     id: 2,
     data: {
       start: 8,
@@ -134,14 +134,14 @@ test('calc per base stats', function () {
     refName: 'ctgA',
     start: 15,
     end: 30
-  }, [new _simpleFeature["default"]({
+  }, [new _simpleFeature.default({
     id: 1,
     data: {
       start: 10,
       end: 20,
       score: 10
     }
-  }), new _simpleFeature["default"]({
+  }), new _simpleFeature.default({
     id: 2,
     data: {
       start: 25,
@@ -154,14 +154,14 @@ test('calc per base stats', function () {
     refName: 'ctgA',
     start: 10,
     end: 19
-  }, [new _simpleFeature["default"]({
+  }, [new _simpleFeature.default({
     id: 1,
     data: {
       start: 5,
       end: 15,
       score: 10
     }
-  }), new _simpleFeature["default"]({
+  }), new _simpleFeature.default({
     id: 1,
     data: {
       start: 18,

package/util/tracks.js

@@ -162,9 +162,7 @@ function getFileName(track) {
 
 function guessAdapter(file, index, adapterHint, model) {
   if (model) {
-    // @ts-ignore
-    var session = (0, _index2.getSession)(model);
-    var adapterGuesser = (0, _mobxStateTree.getEnv)(session).pluginManager.evaluateExtensionPoint('Core-guessAdapterForLocation', function (_file, _index, _adapterHint) {
+    var adapterGuesser = (0, _mobxStateTree.getEnv)(model).pluginManager.evaluateExtensionPoint('Core-guessAdapterForLocation', function (_file, _index, _adapterHint) {
       return undefined;
     });
     var adapter = adapterGuesser(file, index, adapterHint);

package/util/types/index.d.ts

@@ -194,7 +194,7 @@ export declare class RetryError extends Error {
     internetAccountId: string;
     constructor(message: string, internetAccountId: string);
 }
-export declare function isAuthNeededException(exception: Error): boolean;
+export declare function isAuthNeededException(exception: unknown): exception is AuthNeededError;
 export declare function isRetryException(exception: Error): boolean;
 export interface BlobLocation extends SnapshotIn<typeof MUBlobLocation> {
 }