@jbrowse/core 1.5.9 → 1.6.0

package/ui/ViewContainer.js

@@ -1,38 +1,46 @@
 "use strict";
 
-var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/slicedToArray"));
+var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
 
-var _core = require("@material-ui/core");
-
-var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _Menu = _interopRequireDefault(require("@material-ui/icons/Menu"));
+var _react = _interopRequireWildcard(require("react"));
 
-var _styles = require("@material-ui/core/styles");
+var _core = require("@material-ui/core");
 
 var _mobxReact = require("mobx-react");
 
 var _mobxStateTree = require("mobx-state-tree");
 
-var _react = _interopRequireWildcard(require("react"));
+var _reactSizeme = require("react-sizeme");
+
+var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
-var _reactMeasure = require("react-measure");
+var _Menu = _interopRequireDefault(require("@material-ui/icons/Menu"));
 
 var _EditableTypography = _interopRequireDefault(require("./EditableTypography"));
 
 var _Menu2 = _interopRequireDefault(require("./Menu"));
 
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
     viewContainer: {
@@ -48,7 +56,7 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
     },
     iconRoot: {
       '&:hover': {
-        backgroundColor: (0, _styles.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
+        backgroundColor: (0, _core.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
         '@media (hover: none)': {
           backgroundColor: 'transparent'
         }
@@ -78,14 +86,14 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
       IconProps = _ref.IconProps;
 
   var _useState = (0, _react.useState)(),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       anchorEl = _useState2[0],
       setAnchorEl = _useState2[1];
 
   var menuItems = model.menuItems; // <=1.3.3 didn't use a function
 
   var items = typeof menuItems === 'function' ? menuItems() : menuItems;
-  return items !== null && items !== void 0 && items.length ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.IconButton, Object.assign({}, IconButtonProps, {
+  return items !== null && items !== void 0 && items.length ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.IconButton, (0, _extends2.default)({}, IconButtonProps, {
     "aria-label": "more",
     "aria-controls": "view-menu",
     "aria-haspopup": "true",
@@ -93,7 +101,7 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
       setAnchorEl(event.currentTarget);
     },
     "data-testid": "view_menu_icon"
-  }), /*#__PURE__*/_react["default"].createElement(_Menu["default"], IconProps)), /*#__PURE__*/_react["default"].createElement(_Menu2["default"], {
+  }), /*#__PURE__*/_react.default.createElement(_Menu.default, IconProps)), /*#__PURE__*/_react.default.createElement(_Menu2.default, {
     anchorEl: anchorEl,
     open: Boolean(anchorEl),
     onMenuItemClick: function onMenuItemClick(_event, callback) {
@@ -107,28 +115,18 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
   })) : null;
 });
 
-var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.observer)(function (_ref2) {
+var _default = (0, _reactSizeme.withSize)()((0, _mobxReact.observer)(function (_ref2) {
   var view = _ref2.view,
       onClose = _ref2.onClose,
       style = _ref2.style,
       children = _ref2.children,
-      contentRect = _ref2.contentRect,
-      measureRef = _ref2.measureRef;
+      width = _ref2.size.width;
   var classes = useStyles();
   var theme = (0, _core.useTheme)();
   var padWidth = theme.spacing(1);
-  var width = 0;
-
-  if (contentRect.bounds) {
-    ;
-    width = contentRect.bounds.width;
-  }
-
   (0, _react.useEffect)(function () {
-    if (width) {
-      if ((0, _mobxStateTree.isAlive)(view)) {
-        view.setWidth(width - padWidth * 2);
-      }
+    if (width && (0, _mobxStateTree.isAlive)(view)) {
+      view.setWidth(width - padWidth * 2);
     }
   }, [padWidth, view, width]);
   var scrollRef = (0, _react.useRef)(null); // scroll the view into view when first mounted
@@ -136,27 +134,24 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
   // the empty array second param
 
   (0, _react.useEffect)(function () {
-    var _scrollRef$current;
+    var _scrollRef$current, _scrollRef$current$sc;
 
-    if (scrollRef !== null && scrollRef !== void 0 && (_scrollRef$current = scrollRef.current) !== null && _scrollRef$current !== void 0 && _scrollRef$current.scrollIntoView) {
-      scrollRef.current.scrollIntoView({
-        block: 'center'
-      });
-    }
+    (_scrollRef$current = scrollRef.current) === null || _scrollRef$current === void 0 ? void 0 : (_scrollRef$current$sc = _scrollRef$current.scrollIntoView) === null || _scrollRef$current$sc === void 0 ? void 0 : _scrollRef$current$sc.call(_scrollRef$current, {
+      block: 'center'
+    });
   }, []);
-  return /*#__PURE__*/_react["default"].createElement(_core.Paper, {
+  return /*#__PURE__*/_react.default.createElement(_core.Paper, {
     elevation: 12,
-    ref: measureRef,
     className: classes.viewContainer,
-    style: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, style), {}, {
+    style: _objectSpread(_objectSpread({}, style), {}, {
       padding: "0px ".concat(padWidth, "px ").concat(padWidth, "px")
     })
-  }, /*#__PURE__*/_react["default"].createElement("div", {
+  }, /*#__PURE__*/_react.default.createElement("div", {
     ref: scrollRef,
     style: {
       display: 'flex'
     }
-  }, /*#__PURE__*/_react["default"].createElement(ViewMenu, {
+  }, /*#__PURE__*/_react.default.createElement(ViewMenu, {
     model: view,
     IconButtonProps: {
       classes: {
@@ -167,12 +162,12 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
     IconProps: {
       className: classes.icon
     }
-  }), /*#__PURE__*/_react["default"].createElement("div", {
+  }), /*#__PURE__*/_react.default.createElement("div", {
     className: classes.grow
-  }), /*#__PURE__*/_react["default"].createElement(_core.Tooltip, {
+  }), /*#__PURE__*/_react.default.createElement(_core.Tooltip, {
     title: "Rename view",
     arrow: true
-  }, /*#__PURE__*/_react["default"].createElement(_EditableTypography["default"], {
+  }, /*#__PURE__*/_react.default.createElement(_EditableTypography.default, {
     value: view.displayName || ( // @ts-ignore
     view.assemblyNames ? // @ts-ignore
     view.assemblyNames.join(',') : 'Untitled view'),
@@ -186,18 +181,18 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
       inputRoot: classes.inputRoot,
       inputFocused: classes.inputFocused
     }
-  })), /*#__PURE__*/_react["default"].createElement("div", {
+  })), /*#__PURE__*/_react.default.createElement("div", {
     className: classes.grow
-  }), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     "data-testid": "close_view",
     classes: {
       root: classes.iconRoot
     },
     edge: "end",
     onClick: onClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, {
     className: classes.icon
-  }))), /*#__PURE__*/_react["default"].createElement(_core.Paper, null, children));
+  }))), /*#__PURE__*/_react.default.createElement(_core.Paper, null, children));
 }));
 
-exports["default"] = _default;
+exports.default = _default;

package/ui/index.d.ts

@@ -1,6 +1,7 @@
 export * from './theme';
 export { LogoFull, Logomark } from './Logo';
 export { default as App } from './App';
+export { default as ErrorMessage } from './ErrorMessage';
 export { default as FileSelector } from './FileSelector';
 export { default as PrerenderedCanvas } from './PrerenderedCanvas';
 export { default as ResizeHandle } from './ResizeHandle';

package/ui/index.js

@@ -1,8 +1,8 @@
 "use strict";
 
-var _interopRequireWildcard = require("@babel/runtime/helpers/interopRequireWildcard")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -11,6 +11,7 @@ var _exportNames = {
   LogoFull: true,
   Logomark: true,
   App: true,
+  ErrorMessage: true,
   FileSelector: true,
   PrerenderedCanvas: true,
   ResizeHandle: true,
@@ -24,31 +25,37 @@ var _exportNames = {
 Object.defineProperty(exports, "App", {
   enumerable: true,
   get: function get() {
-    return _App["default"];
+    return _App.default;
   }
 });
 Object.defineProperty(exports, "EditableTypography", {
   enumerable: true,
   get: function get() {
-    return _EditableTypography["default"];
+    return _EditableTypography.default;
+  }
+});
+Object.defineProperty(exports, "ErrorMessage", {
+  enumerable: true,
+  get: function get() {
+    return _ErrorMessage.default;
   }
 });
 Object.defineProperty(exports, "FactoryResetDialog", {
   enumerable: true,
   get: function get() {
-    return _FactoryResetDialog["default"];
+    return _FactoryResetDialog.default;
   }
 });
 Object.defineProperty(exports, "FatalErrorDialog", {
   enumerable: true,
   get: function get() {
-    return _FatalErrorDialog["default"];
+    return _FatalErrorDialog.default;
   }
 });
 Object.defineProperty(exports, "FileSelector", {
   enumerable: true,
   get: function get() {
-    return _FileSelector["default"];
+    return _FileSelector.default;
   }
 });
 Object.defineProperty(exports, "LogoFull", {
@@ -66,31 +73,31 @@ Object.defineProperty(exports, "Logomark", {
 Object.defineProperty(exports, "Menu", {
   enumerable: true,
   get: function get() {
-    return _Menu["default"];
+    return _Menu.default;
   }
 });
 Object.defineProperty(exports, "PrerenderedCanvas", {
   enumerable: true,
   get: function get() {
-    return _PrerenderedCanvas["default"];
+    return _PrerenderedCanvas.default;
   }
 });
 Object.defineProperty(exports, "ResizeHandle", {
   enumerable: true,
   get: function get() {
-    return _ResizeHandle["default"];
+    return _ResizeHandle.default;
   }
 });
 Object.defineProperty(exports, "SanitizedHTML", {
   enumerable: true,
   get: function get() {
-    return _SanitizedHTML["default"];
+    return _SanitizedHTML.default;
   }
 });
 Object.defineProperty(exports, "Tooltip", {
   enumerable: true,
   get: function get() {
-    return _Tooltip["default"];
+    return _Tooltip.default;
   }
 });
 
@@ -112,6 +119,8 @@ var _Logo = require("./Logo");
 
 var _App = _interopRequireDefault(require("./App"));
 
+var _ErrorMessage = _interopRequireDefault(require("./ErrorMessage"));
+
 var _FileSelector = _interopRequireDefault(require("./FileSelector"));
 
 var _PrerenderedCanvas = _interopRequireDefault(require("./PrerenderedCanvas"));
@@ -140,4 +149,8 @@ Object.keys(_Menu).forEach(function (key) {
   });
 });
 
-var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
+var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
+
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }

package/ui/theme.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -10,7 +10,7 @@ exports.createJBrowseDefaultProps = createJBrowseDefaultProps;
 exports.createJBrowseTheme = createJBrowseTheme;
 exports.jbrowseDefaultPalette = exports.jbrowseBaseTheme = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _colors = require("@material-ui/core/colors");
 
@@ -20,6 +20,10 @@ var _createPalette = require("@material-ui/core/styles/createPalette");
 
 var _deepmerge = _interopRequireDefault(require("deepmerge"));
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var midnight = '#0D233F';
 var grape = '#721E63';
 var forest = '#135560';
@@ -111,7 +115,7 @@ createJBrowseDefaultProps() {
 
 function createJBrowseDefaultOverrides() {
   var palette = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};
-  var generatedPalette = (0, _deepmerge["default"])(jbrowseDefaultPalette, palette);
+  var generatedPalette = (0, _deepmerge.default)(jbrowseDefaultPalette, palette);
   return {
     MuiIconButton: {
       colorSecondary: {
@@ -197,24 +201,24 @@ function createJBrowseTheme(theme) {
   }
 
   if ((_theme$palette = theme.palette) !== null && _theme$palette !== void 0 && _theme$palette.tertiary) {
-    theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-      palette: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme.palette), {}, {
+    theme = _objectSpread(_objectSpread({}, theme), {}, {
+      palette: _objectSpread(_objectSpread({}, theme.palette), {}, {
         tertiary: refTheme.palette.augmentColor(theme.palette.tertiary)
       })
     });
   }
 
   if ((_theme$palette2 = theme.palette) !== null && _theme$palette2 !== void 0 && _theme$palette2.quaternary) {
-    theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-      palette: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme.palette), {}, {
+    theme = _objectSpread(_objectSpread({}, theme), {}, {
+      palette: _objectSpread(_objectSpread({}, theme.palette), {}, {
         quaternary: refTheme.palette.augmentColor(theme.palette.quaternary)
       })
     });
   }
 
-  theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-    props: (0, _deepmerge["default"])(createJBrowseDefaultProps(), theme.props || {}),
-    overrides: (0, _deepmerge["default"])(createJBrowseDefaultOverrides(theme.palette), theme.overrides || {})
+  theme = _objectSpread(_objectSpread({}, theme), {}, {
+    props: (0, _deepmerge.default)(createJBrowseDefaultProps(), theme.props || {}),
+    overrides: (0, _deepmerge.default)(createJBrowseDefaultOverrides(theme.palette), theme.overrides || {})
   });
-  return (0, _styles.createTheme)((0, _deepmerge["default"])(jbrowseBaseTheme, theme));
+  return (0, _styles.createTheme)((0, _deepmerge.default)(jbrowseBaseTheme, theme));
 }

package/util/Base1DViewModel.d.ts

@@ -36,18 +36,6 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     readonly maxOffset: number;
     readonly minOffset: number;
     readonly totalBp: number;
-    /**
-     * calculates the Px at which coord is found.
-     *
-     * @param refName - string, refName of region
-     * @param coord - number, bp to be translated to Px
-     * @param regionNumber - number, index of displayedRegion in displayedRegions array
-     */
-    bpToPx({ refName, coord, regionNumber, }: {
-        refName: string;
-        coord: number;
-        regionNumber?: number | undefined;
-    }): number | undefined;
     pxToBp(px: number): {
         oob: boolean;
         coord: number;
@@ -72,6 +60,18 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     readonly dynamicBlocks: import("./blockTypes").BlockSet;
     readonly staticBlocks: import("./blockTypes").BlockSet;
     readonly currBp: number;
+    /**
+     * calculates the Px at which coord is found.
+     *
+     * @param refName - string, refName of region
+     * @param coord - number, bp to be translated to Px
+     * @param regionNumber - number, index of displayedRegion in displayedRegions array
+     */
+    bpToPx({ refName, coord, regionNumber, }: {
+        refName: string;
+        coord: number;
+        regionNumber?: number | undefined;
+    }): number | undefined;
 } & {
     setFeatures(features: Feature[]): void;
     zoomToDisplayedRegions(leftPx: BpOffset | undefined, rightPx: BpOffset | undefined): void;
@@ -87,6 +87,8 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     zoomOut(): void;
     zoomIn(): void;
     zoomTo(newBpPerPx: number, offset?: number): void;
+    scrollTo(offsetPx: number): number;
+    centerAt(bp: number, refName: string, regionIndex: number): void;
     scroll(distance: number): number;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export declare type Base1DViewStateModel = typeof Base1DView;

package/util/Base1DViewModel.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("@babel/runtime/helpers/esm/objectSpread2"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -19,13 +19,17 @@ var _calculateDynamicBlocks = _interopRequireDefault(require("./calculateDynamic
 
 var _calculateStaticBlocks = _interopRequireDefault(require("./calculateStaticBlocks"));
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var Base1DView = _mobxStateTree.types.model('Base1DView', {
   displayedRegions: _mobxStateTree.types.array(_mst.Region),
   bpPerPx: 0,
   offsetPx: 0,
   interRegionPaddingWidth: _mobxStateTree.types.optional(_mobxStateTree.types.number, 0),
   minimumBlockWidth: _mobxStateTree.types.optional(_mobxStateTree.types.number, 0)
-})["volatile"](function () {
+}).volatile(function () {
   return {
     features: undefined,
     volatileWidth: 0
@@ -72,50 +76,6 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       }, 0);
     },
 
-    /**
-     * calculates the Px at which coord is found.
-     *
-     * @param refName - string, refName of region
-     * @param coord - number, bp to be translated to Px
-     * @param regionNumber - number, index of displayedRegion in displayedRegions array
-     */
-    bpToPx: function bpToPx(_ref) {
-      var _this = this;
-
-      var refName = _ref.refName,
-          coord = _ref.coord,
-          regionNumber = _ref.regionNumber;
-      var offsetBp = 0;
-      var interRegionPaddingBp = self.interRegionPaddingWidth * self.bpPerPx;
-      var minimumBlockBp = self.minimumBlockWidth * self.bpPerPx;
-      var index = self.displayedRegions.findIndex(function (region, idx) {
-        var len = region.end - region.start;
-
-        if (refName === region.refName && coord >= region.start && coord <= region.end) {
-          if (regionNumber ? regionNumber === idx : true) {
-            offsetBp += region.reversed ? region.end - coord : coord - region.start;
-            return true;
-          }
-        } // add the interRegionPaddingWidth if the boundary is in the screen
-        // e.g. offset>0 && offset<width
-
-
-        if (region.end - region.start > minimumBlockBp && offsetBp / self.bpPerPx > 0 && offsetBp / self.bpPerPx < _this.width) {
-          offsetBp += len + interRegionPaddingBp;
-        } else {
-          offsetBp += len;
-        }
-
-        return false;
-      });
-      var foundRegion = self.displayedRegions[index];
-
-      if (foundRegion) {
-        return Math.round(offsetBp / self.bpPerPx);
-      }
-
-      return undefined;
-    },
     pxToBp: function pxToBp(px) {
       var bpSoFar = 0;
       var bp = (self.offsetPx + px) * self.bpPerPx;
@@ -124,7 +84,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       if (bp < 0) {
         var region = self.displayedRegions[0];
         var offset = bp;
-        return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(region)), {}, {
+        return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(region)), {}, {
           oob: true,
           coord: region.reversed ? Math.floor(region.end - offset) + 1 : Math.floor(region.start + offset) + 1,
           offset: offset,
@@ -142,7 +102,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
         var _offset = bp - bpSoFar;
 
         if (len + bpSoFar > bp && bpSoFar <= bp) {
-          return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(_region)), {}, {
+          return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(_region)), {}, {
             oob: false,
             offset: _offset,
             coord: _region.reversed ? Math.floor(_region.end - _offset) + 1 : Math.floor(_region.start + _offset) + 1,
@@ -166,7 +126,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 
         var _offset2 = bp - bpSoFar + _len;
 
-        return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(_region2)), {}, {
+        return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(_region2)), {}, {
           oob: true,
           offset: _offset2,
           coord: _region2.reversed ? Math.floor(_region2.end - _offset2) + 1 : Math.floor(_region2.start + _offset2) + 1,
@@ -189,11 +149,11 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 }).views(function (self) {
   return {
     get dynamicBlocks() {
-      return (0, _calculateDynamicBlocks["default"])(self);
+      return (0, _calculateDynamicBlocks.default)(self);
     },
 
     get staticBlocks() {
-      return (0, _calculateStaticBlocks["default"])(self);
+      return (0, _calculateStaticBlocks.default)(self);
     },
 
     get currBp() {
@@ -202,8 +162,28 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       }).reduce(function (a, b) {
         return a + b;
       }, 0);
-    }
+    },
 
+    /**
+     * calculates the Px at which coord is found.
+     *
+     * @param refName - string, refName of region
+     * @param coord - number, bp to be translated to Px
+     * @param regionNumber - number, index of displayedRegion in displayedRegions array
+     */
+    bpToPx: function bpToPx(_ref) {
+      var _viewBpToPx;
+
+      var refName = _ref.refName,
+          coord = _ref.coord,
+          regionNumber = _ref.regionNumber;
+      return (_viewBpToPx = (0, _index.viewBpToPx)({
+        refName: refName,
+        coord: coord,
+        regionNumber: regionNumber,
+        self: self
+      })) === null || _viewBpToPx === void 0 ? void 0 : _viewBpToPx.offsetPx;
+    }
   };
 }).actions(function (self) {
   return {
@@ -311,6 +291,22 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 
       self.offsetPx = (0, _index.clamp)(Math.round((self.offsetPx + offset) * oldBpPerPx / bpPerPx - offset), self.minOffset, self.maxOffset);
     },
+    scrollTo: function scrollTo(offsetPx) {
+      var newOffsetPx = (0, _index.clamp)(offsetPx, self.minOffset, self.maxOffset);
+      self.offsetPx = newOffsetPx;
+      return newOffsetPx;
+    },
+    centerAt: function centerAt(bp, refName, regionIndex) {
+      var centerPx = self.bpToPx({
+        refName: refName,
+        coord: bp,
+        regionNumber: regionIndex
+      });
+
+      if (centerPx) {
+        this.scrollTo(Math.round(centerPx - self.width / 2));
+      }
+    },
     scroll: function scroll(distance) {
       var oldOffsetPx = self.offsetPx; // the scroll is clamped to keep the linear genome on the main screen
 
@@ -322,4 +318,4 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 });
 
 var _default = Base1DView;
-exports["default"] = _default;
+exports.default = _default;