@jbrowse/core 1.5.6 → 1.6.0

package/util/types/index.d.ts

@@ -194,7 +194,7 @@ export declare class RetryError extends Error {
     internetAccountId: string;
     constructor(message: string, internetAccountId: string);
 }
-export declare function isAuthNeededException(exception: Error): boolean;
+export declare function isAuthNeededException(exception: unknown): exception is AuthNeededError;
 export declare function isRetryException(exception: Error): boolean;
 export interface BlobLocation extends SnapshotIn<typeof MUBlobLocation> {
 }

package/util/types/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -43,19 +43,21 @@ exports.isUriLocation = isUriLocation;
 exports.isViewContainer = isViewContainer;
 exports.isViewModel = isViewModel;
 
-var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _assertThisInitialized2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/assertThisInitialized.js"));
+var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
 
-var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
 
-var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
 
-var _wrapNativeSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/wrapNativeSuper.js"));
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
 
-var _typeof2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/typeof.js"));
+var _wrapNativeSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/wrapNativeSuper"));
+
+var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -73,12 +75,16 @@ Object.keys(_util).forEach(function (key) {
   });
 });
 
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
 function isViewContainer(thing) {
   return (0, _mobxStateTree.isStateTreeNode)(thing) && 'removeView' in thing && 'addView' in thing && 'views' in thing;
 }
 
 function isSessionModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'rpcManager' in thing && 'configuration' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'rpcManager' in thing && 'configuration' in thing;
 }
 /** abstract interface for a session allows editing configurations */
 
@@ -104,39 +110,39 @@ function isSessionWithSessionPlugins(thing) {
 
 
 function isSelectionContainer(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'selection' in thing && 'setSelection' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'selection' in thing && 'setSelection' in thing;
 }
 /** minimum interface that all view state models must implement */
 
 
 function isViewModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'width' in thing && 'setWidth' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'width' in thing && 'setWidth' in thing;
 }
 
 function isTrackModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'configuration' in thing && // @ts-ignore
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'configuration' in thing && // @ts-ignore
   thing.configuration.trackId;
 }
 
 function isDisplayModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'configuration' in thing && // @ts-ignore
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'configuration' in thing && // @ts-ignore
   thing.configuration.displayId;
 }
 
 function isTrackViewModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'showTrack' in thing && 'hideTrack' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'showTrack' in thing && 'hideTrack' in thing;
 }
 /** minimum interface for the root MST model of a JBrowse app */
 
 
 function isAppRootModel(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'isAssemblyEditing' in thing && 'findAppropriateInternetAccount' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'isAssemblyEditing' in thing && 'findAppropriateInternetAccount' in thing;
 }
 /** a root model that manages global menus */
 
 
 function isAbstractMenuManager(thing) {
-  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'appendMenu' in thing && 'appendToSubMenu' in thing;
+  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'appendMenu' in thing && 'appendToSubMenu' in thing;
 } // Empty interfaces required by mobx-state-tree
 // See https://mobx-state-tree.js.org/tips/typescript#using-a-mst-type-at-design-time
 
@@ -144,40 +150,40 @@ function isAbstractMenuManager(thing) {
 
 
 function isUriLocation(location) {
-  return (0, _typeof2["default"])(location) === 'object' && location !== null && 'locationType' in location && 'uri' in location;
+  return (0, _typeof2.default)(location) === 'object' && location !== null && 'locationType' in location && 'uri' in location;
 }
 
 var AuthNeededError = /*#__PURE__*/function (_Error) {
-  (0, _inherits2["default"])(AuthNeededError, _Error);
+  (0, _inherits2.default)(AuthNeededError, _Error);
 
-  var _super = (0, _createSuper2["default"])(AuthNeededError);
+  var _super = _createSuper(AuthNeededError);
 
   function AuthNeededError(message, location) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, AuthNeededError);
+    (0, _classCallCheck2.default)(this, AuthNeededError);
     _this = _super.call(this, message);
     _this.message = message;
     _this.location = location;
     _this.name = 'AuthNeededError';
-    Object.setPrototypeOf((0, _assertThisInitialized2["default"])(_this), AuthNeededError.prototype);
+    Object.setPrototypeOf((0, _assertThisInitialized2.default)(_this), AuthNeededError.prototype);
     return _this;
   }
 
-  return (0, _createClass2["default"])(AuthNeededError);
-}( /*#__PURE__*/(0, _wrapNativeSuper2["default"])(Error));
+  return (0, _createClass2.default)(AuthNeededError);
+}( /*#__PURE__*/(0, _wrapNativeSuper2.default)(Error));
 
 exports.AuthNeededError = AuthNeededError;
 
 var RetryError = /*#__PURE__*/function (_Error2) {
-  (0, _inherits2["default"])(RetryError, _Error2);
+  (0, _inherits2.default)(RetryError, _Error2);
 
-  var _super2 = (0, _createSuper2["default"])(RetryError);
+  var _super2 = _createSuper(RetryError);
 
   function RetryError(message, internetAccountId) {
     var _this2;
 
-    (0, _classCallCheck2["default"])(this, RetryError);
+    (0, _classCallCheck2.default)(this, RetryError);
     _this2 = _super2.call(this, message);
     _this2.message = message;
     _this2.internetAccountId = internetAccountId;
@@ -185,15 +191,14 @@ var RetryError = /*#__PURE__*/function (_Error2) {
     return _this2;
   }
 
-  return (0, _createClass2["default"])(RetryError);
-}( /*#__PURE__*/(0, _wrapNativeSuper2["default"])(Error));
+  return (0, _createClass2.default)(RetryError);
+}( /*#__PURE__*/(0, _wrapNativeSuper2.default)(Error));
 
 exports.RetryError = RetryError;
 
 function isAuthNeededException(exception) {
-  return (// DOMException
-    exception.name === 'AuthNeededError' || exception.location !== undefined
-  );
+  return exception instanceof Error && ( // DOMException
+  exception.name === 'AuthNeededError' || exception.location !== undefined);
 }
 
 function isRetryException(exception) {

package/util/types/mst.js

@@ -1,15 +1,15 @@
 "use strict";
 
-var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.UriLocationRaw = exports.UriLocation = exports.Region = exports.PropTypes = exports.NoAssemblyRegion = exports.LocalPathLocation = exports.FileLocation = exports.ElementId = exports.BlobLocation = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _objectWithoutProperties2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectWithoutProperties.js"));
+var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
 
 var _shortid = _interopRequireDefault(require("shortid"));
 
@@ -22,20 +22,24 @@ var _mobxReact = require("mobx-react");
 var _excluded = ["baseUri"],
     _excluded2 = ["locationType"];
 
-var ElementId = _mobxStateTree.types.optional(_mobxStateTree.types.identifier, _shortid["default"].generate); // PropTypes that are useful when working with instances of these in react components
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
+var ElementId = _mobxStateTree.types.optional(_mobxStateTree.types.identifier, _shortid.default.generate); // PropTypes that are useful when working with instances of these in react components
 
 
 exports.ElementId = ElementId;
 var PropTypes = {
-  Region: _propTypes["default"].shape({
-    refName: _propTypes["default"].string.isRequired,
-    start: _propTypes["default"].number.isRequired,
-    end: _propTypes["default"].number.isRequired
+  Region: _propTypes.default.shape({
+    refName: _propTypes.default.string.isRequired,
+    start: _propTypes.default.number.isRequired,
+    end: _propTypes.default.number.isRequired
   }),
   ConfigSchema: _mobxReact.PropTypes.objectOrObservableObject,
-  Feature: _propTypes["default"].shape({
-    get: _propTypes["default"].func.isRequired,
-    id: _propTypes["default"].func.isRequired
+  Feature: _propTypes.default.shape({
+    get: _propTypes.default.func.isRequired,
+    id: _propTypes.default.func.isRequired
   })
 };
 exports.PropTypes = PropTypes;
@@ -44,7 +48,7 @@ var NoAssemblyRegion = _mobxStateTree.types.model('NoAssemblyRegion', {
   refName: _mobxStateTree.types.string,
   start: _mobxStateTree.types.number,
   end: _mobxStateTree.types.number,
-  reversed: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], false)
+  reversed: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, false)
 }).actions(function (self) {
   return {
     setRefName: function setRefName(newRefName) {
@@ -95,7 +99,7 @@ exports.UriLocationRaw = UriLocationRaw;
 var UriLocation = _mobxStateTree.types.snapshotProcessor(UriLocationRaw, {
   postProcessor: function postProcessor(snap) {
     var baseUri = snap.baseUri,
-        rest = (0, _objectWithoutProperties2["default"])(snap, _excluded);
+        rest = (0, _objectWithoutProperties2.default)(snap, _excluded);
 
     if (!baseUri) {
       return rest;
@@ -116,7 +120,7 @@ var FileLocation = _mobxStateTree.types.snapshotProcessor(_mobxStateTree.types.u
 
 
     var locationType = snapshot.locationType,
-        rest = (0, _objectWithoutProperties2["default"])(snapshot, _excluded2);
+        rest = (0, _objectWithoutProperties2.default)(snapshot, _excluded2);
 
     if (!locationType) {
       // @ts-ignore
@@ -133,7 +137,7 @@ var FileLocation = _mobxStateTree.types.snapshotProcessor(_mobxStateTree.types.u
         _locationType = 'BlobLocation';
       }
 
-      return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, rest), {}, {
+      return _objectSpread(_objectSpread({}, rest), {}, {
         locationType: _locationType
       });
     }

package/util/when.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -8,9 +8,9 @@ Object.defineProperty(exports, "__esModule", {
 exports.when = when;
 exports.whenPresent = whenPresent;
 
-var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
 var _mobx = require("mobx");
 
@@ -66,7 +66,7 @@ function when(getter) {
         finishTimeout();
         resolve(true);
       }
-    })["catch"](function (err) {
+    }).catch(function (err) {
       if (!finished) {
         finished = true;
         finishTimeout();
@@ -87,10 +87,10 @@ function whenPresent(_x) {
 }
 
 function _whenPresent() {
-  _whenPresent = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(getter) {
+  _whenPresent = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(getter) {
     var opts,
         _args = arguments;
-    return _index["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0: