@jbrowse/core 1.5.6 → 1.6.0

package/rpc/RpcManager.js

@@ -1,19 +1,21 @@
 "use strict";
 
-var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _configuration = require("../configuration");
 
@@ -24,17 +26,17 @@ var _WebWorkerRpcDriver = _interopRequireDefault(require("./WebWorkerRpcDriver")
 var _MainThreadRpcDriver = _interopRequireDefault(require("./MainThreadRpcDriver"));
 
 var DriverClasses = {
-  WebWorkerRpcDriver: _WebWorkerRpcDriver["default"],
-  MainThreadRpcDriver: _MainThreadRpcDriver["default"]
+  WebWorkerRpcDriver: _WebWorkerRpcDriver.default,
+  MainThreadRpcDriver: _MainThreadRpcDriver.default
 };
 
 var RpcManager = /*#__PURE__*/function () {
   function RpcManager(pluginManager, mainConfiguration, backendConfigurations) {
-    (0, _classCallCheck2["default"])(this, RpcManager);
+    (0, _classCallCheck2.default)(this, RpcManager);
     this.pluginManager = pluginManager;
     this.mainConfiguration = mainConfiguration;
     this.backendConfigurations = backendConfigurations;
-    this.driverObjects = void 0;
+    (0, _defineProperty2.default)(this, "driverObjects", void 0);
 
     if (!mainConfiguration) {
       throw new Error('RpcManager requires at least a main configuration');
@@ -43,7 +45,7 @@ var RpcManager = /*#__PURE__*/function () {
     this.driverObjects = new Map();
   }
 
-  (0, _createClass2["default"])(RpcManager, [{
+  (0, _createClass2.default)(RpcManager, [{
     key: "getDriver",
     value: function getDriver(backendName) {
       var driver = this.driverObjects.get(backendName);
@@ -73,9 +75,9 @@ var RpcManager = /*#__PURE__*/function () {
   }, {
     key: "getDriverForCall",
     value: function () {
-      var _getDriverForCall = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(_sessionId, _functionName, args) {
+      var _getDriverForCall = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_sessionId, _functionName, args) {
         var backendName;
-        return _index["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -99,11 +101,11 @@ var RpcManager = /*#__PURE__*/function () {
   }, {
     key: "call",
     value: function () {
-      var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(sessionId, functionName, args) {
+      var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(sessionId, functionName, args) {
         var opts,
             driverForCall,
             _args2 = arguments;
-        return _index["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -142,5 +144,5 @@ var RpcManager = /*#__PURE__*/function () {
   return RpcManager;
 }();
 
-exports["default"] = RpcManager;
-RpcManager.configSchema = _configSchema["default"];
+exports.default = RpcManager;
+(0, _defineProperty2.default)(RpcManager, "configSchema", _configSchema.default);

package/rpc/WebWorkerRpcDriver.js

@@ -1,29 +1,31 @@
 "use strict";
 
-var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _objectSpread2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _get2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/get.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _getPrototypeOf2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/getPrototypeOf.js"));
+var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
 
-var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
 
-var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
 
 var _librpcWebMod = _interopRequireDefault(require("librpc-web-mod"));
 
@@ -31,17 +33,25 @@ var _shortid = _interopRequireDefault(require("shortid"));
 
 var _BaseRpcDriver2 = _interopRequireDefault(require("./BaseRpcDriver"));
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
 var WebWorkerHandle = /*#__PURE__*/function (_Rpc$Client) {
-  (0, _inherits2["default"])(WebWorkerHandle, _Rpc$Client);
+  (0, _inherits2.default)(WebWorkerHandle, _Rpc$Client);
 
-  var _super = (0, _createSuper2["default"])(WebWorkerHandle);
+  var _super = _createSuper(WebWorkerHandle);
 
   function WebWorkerHandle() {
-    (0, _classCallCheck2["default"])(this, WebWorkerHandle);
+    (0, _classCallCheck2.default)(this, WebWorkerHandle);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2["default"])(WebWorkerHandle, [{
+  (0, _createClass2.default)(WebWorkerHandle, [{
     key: "destroy",
     value: function destroy() {
       this.workers[0].terminate();
@@ -49,14 +59,14 @@ var WebWorkerHandle = /*#__PURE__*/function (_Rpc$Client) {
   }, {
     key: "call",
     value: function () {
-      var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(functionName, args, opts) {
+      var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(functionName, args, opts) {
         var statusCallback, rpcDriverClassName, channel, listener, result;
-        return _index["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
                 statusCallback = opts.statusCallback, rpcDriverClassName = opts.rpcDriverClassName;
-                channel = "message-".concat(_shortid["default"].generate());
+                channel = "message-".concat(_shortid.default.generate());
 
                 listener = function listener(message) {
                   if (statusCallback) {
@@ -66,7 +76,7 @@ var WebWorkerHandle = /*#__PURE__*/function (_Rpc$Client) {
 
                 this.on(channel, listener);
                 _context.next = 6;
-                return (0, _get2["default"])((0, _getPrototypeOf2["default"])(WebWorkerHandle.prototype), "call", this).call(this, functionName, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, args), {}, {
+                return (0, _get2.default)((0, _getPrototypeOf2.default)(WebWorkerHandle.prototype), "call", this).call(this, functionName, _objectSpread(_objectSpread({}, args), {}, {
                   channel: channel,
                   rpcDriverClassName: rpcDriverClassName
                 }), opts);
@@ -92,26 +102,26 @@ var WebWorkerHandle = /*#__PURE__*/function (_Rpc$Client) {
     }()
   }]);
   return WebWorkerHandle;
-}(_librpcWebMod["default"].Client);
+}(_librpcWebMod.default.Client);
 
 var WebWorkerRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
-  (0, _inherits2["default"])(WebWorkerRpcDriver, _BaseRpcDriver);
+  (0, _inherits2.default)(WebWorkerRpcDriver, _BaseRpcDriver);
 
-  var _super2 = (0, _createSuper2["default"])(WebWorkerRpcDriver);
+  var _super2 = _createSuper(WebWorkerRpcDriver);
 
   function WebWorkerRpcDriver(args, workerBootConfiguration) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, WebWorkerRpcDriver);
+    (0, _classCallCheck2.default)(this, WebWorkerRpcDriver);
     _this = _super2.call(this, args);
     _this.workerBootConfiguration = workerBootConfiguration;
-    _this.name = 'WebWorkerRpcDriver';
-    _this.WorkerClass = void 0;
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'WebWorkerRpcDriver');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "WorkerClass", void 0);
     _this.WorkerClass = args.WorkerClass;
     return _this;
   }
 
-  (0, _createClass2["default"])(WebWorkerRpcDriver, [{
+  (0, _createClass2.default)(WebWorkerRpcDriver, [{
     key: "makeWorker",
     value: function makeWorker() {
       // note that we are making a Rpc.Client connection with a worker pool of
@@ -126,6 +136,6 @@ var WebWorkerRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
     }
   }]);
   return WebWorkerRpcDriver;
-}(_BaseRpcDriver2["default"]);
+}(_BaseRpcDriver2.default);
 
-exports["default"] = WebWorkerRpcDriver;
+exports.default = WebWorkerRpcDriver;

package/rpc/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -41,4 +41,4 @@ var _default = (0, _configuration.ConfigurationSchema)('RpcOptions', {
   }
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/rpc/coreRpcMethods.d.ts

@@ -59,6 +59,22 @@ export interface RenderArgsSerialized extends ServerSideRenderArgsSerialized {
     adapterConfig: {};
     rendererType: string;
 }
+export declare class CoreEstimateRegionStats extends RpcMethodType {
+    name: string;
+    serializeArguments(args: RenderArgs & {
+        signal?: AbortSignal;
+        statusCallback?: Function;
+    }, rpcDriverClassName: string): Promise<{}>;
+    execute(args: {
+        adapterConfig: {};
+        regions: Region[];
+        signal?: RemoteAbortSignal;
+        headers?: Record<string, string>;
+        sessionId: string;
+    }, rpcDriverClassName: string): Promise<import("../data_adapters/BaseAdapter").Stats | {
+        featureDensity: number;
+    }>;
+}
 /**
  * fetches features from an adapter and call a renderer with them
  */