@jbrowse/core 1.5.0 → 1.5.4

package/data_adapters/CytobandAdapter.js

@@ -0,0 +1,128 @@
+"use strict";
+
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.configSchema = exports.DataAdapter = void 0;
+
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
+
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
+
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
+
+var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
+
+var _configuration = require("@jbrowse/core/configuration");
+
+var _io = require("@jbrowse/core/util/io");
+
+var _BaseAdapter2 = require("./BaseAdapter");
+
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
+var configSchema = (0, _configuration.ConfigurationSchema)('CytobandAdapter', {
+  cytobandLocation: {
+    type: 'fileLocation',
+    defaultValue: {
+      uri: '/path/to/cytoband.txt.gz'
+    }
+  }
+}, {
+  explicitlyTyped: true
+});
+exports.configSchema = configSchema;
+
+var CytobandAdapter = /*#__PURE__*/function (_BaseAdapter) {
+  (0, _inherits2.default)(CytobandAdapter, _BaseAdapter);
+
+  var _super = _createSuper(CytobandAdapter);
+
+  function CytobandAdapter() {
+    (0, _classCallCheck2.default)(this, CytobandAdapter);
+    return _super.apply(this, arguments);
+  }
+
+  (0, _createClass2.default)(CytobandAdapter, [{
+    key: "getData",
+    value: function () {
+      var _getData = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
+        var loc, data;
+        return _regenerator.default.wrap(function _callee$(_context) {
+          while (1) {
+            switch (_context.prev = _context.next) {
+              case 0:
+                loc = (0, _configuration.readConfObject)(this.config, 'cytobandLocation');
+
+                if (!(loc.uri === '' || loc.uri === '/path/to/cytoband.txt.gz')) {
+                  _context.next = 3;
+                  break;
+                }
+
+                return _context.abrupt("return", []);
+
+              case 3:
+                _context.next = 5;
+                return (0, _io.openLocation)(loc).readFile('utf8');
+
+              case 5:
+                data = _context.sent;
+                return _context.abrupt("return", data.split('\n').filter(function (f) {
+                  return !!f.trim();
+                }).map(function (line) {
+                  var _line$split = line.split('\t'),
+                      _line$split2 = (0, _slicedToArray2.default)(_line$split, 5),
+                      refName = _line$split2[0],
+                      start = _line$split2[1],
+                      end = _line$split2[2],
+                      name = _line$split2[3],
+                      type = _line$split2[4];
+
+                  return new _simpleFeature.default({
+                    uniqueId: line,
+                    refName: refName,
+                    start: +start,
+                    end: +end,
+                    name: name,
+                    type: type
+                  });
+                }));
+
+              case 7:
+              case "end":
+                return _context.stop();
+            }
+          }
+        }, _callee, this);
+      }));
+
+      function getData() {
+        return _getData.apply(this, arguments);
+      }
+
+      return getData;
+    }()
+  }, {
+    key: "freeResources",
+    value: function
+      /* { region } */
+    freeResources() {}
+  }]);
+  return CytobandAdapter;
+}(_BaseAdapter2.BaseAdapter);
+
+exports.DataAdapter = CytobandAdapter;

package/data_adapters/dataAdapterCache.js

@@ -5,9 +5,9 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.getAdapter = getAdapter;
-exports.freeAdapterResources = freeAdapterResources;
 exports.clearAdapterCache = clearAdapterCache;
+exports.freeAdapterResources = freeAdapterResources;
+exports.getAdapter = getAdapter;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "1.5.0",
+  "version": "1.5.4",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
     "jbrowse",
@@ -30,7 +30,7 @@
     "postpublish": "git push origin main --follow-tags"
   },
   "dependencies": {
-    "@babel/runtime": "^7.15.3",
+    "@babel/runtime": "^7.16.3",
     "@material-ui/icons": "^4.0.1",
     "abortable-promise-cache": "^1.1.3",
     "base64-js": "^1.3.0",
@@ -40,26 +40,27 @@
     "copy-to-clipboard": "^3.3.1",
     "deepmerge": "^4.2.2",
     "detect-node": "^2.1.0",
-    "dompurify": "^2.0.11",
+    "dompurify": "^2.3.4",
     "escape-html": "^1.0.3",
     "fast-deep-equal": "^3.1.3",
     "file-uri-to-path": "^1.0.0",
-    "generic-filehandle": "^2.2.0",
+    "generic-filehandle": "^2.2.2",
     "http-range-fetcher": "^1.2.2",
     "is-object": "^1.0.1",
     "jexl": "^2.3.0",
     "json-stable-stringify": "^1.0.1",
-    "librpc-web-mod": "^1.1.2",
+    "librpc-web-mod": "^1.1.4",
     "load-script2": "^2.0.5",
     "object.fromentries": "^2.0.0",
     "rbush": "^3.0.1",
     "react-error-boundary": "^3.0.0",
-    "react-intersection-observer": "^8.31.0",
+    "react-intersection-observer": "^8.32.5",
     "react-measure": "^2.3.0",
+    "sanitize-filename": "^1.6.3",
     "shortid": "^2.2.13",
     "svg-path-generator": "^1.1.0",
     "tenacious-fetch": "^2.1.0",
-    "util.promisify": "^1.0.0"
+    "util.promisify": "^1.1.1"
   },
   "peerDependencies": {
     "@material-ui/core": "^4.12.2",
@@ -77,5 +78,5 @@
     "access": "public",
     "directory": "dist"
   },
-  "gitHead": "542025578a39bd170c8a166f2568ee7edbd54072"
+  "gitHead": "0c398214590969168694b4ed8e20b595178b9efd"
 }

package/pluggableElementTypes/AdapterType.d.ts

@@ -1,15 +1,23 @@
 import PluggableElementBase from './PluggableElementBase';
 import { AnyConfigurationSchemaType } from '../configuration/configurationSchema';
 import { AnyAdapter } from '../data_adapters/BaseAdapter';
+export declare type AdapterMetadata = {
+    category: string | null;
+    hiddenFromGUI: boolean | null;
+    displayName: string | null;
+    description: string | null;
+};
 export default class AdapterType extends PluggableElementBase {
     AdapterClass?: AnyAdapter;
-    getAdapterClass?: () => Promise<AnyAdapter>;
+    getAdapterClass: () => Promise<AnyAdapter>;
     configSchema: AnyConfigurationSchemaType;
     adapterCapabilities: string[];
+    adapterMetadata?: AdapterMetadata;
     constructor(stuff: {
         name: string;
         configSchema: AnyConfigurationSchemaType;
         adapterCapabilities?: string[];
+        adapterMetadata?: AdapterMetadata;
     } & ({
         AdapterClass: AnyAdapter;
     } | {

package/pluggableElementTypes/AdapterType.js

@@ -7,6 +7,12 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -39,9 +45,24 @@ var AdapterType = /*#__PURE__*/function (_PluggableElementBase) {
     (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "getAdapterClass", void 0);
     (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
     (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "adapterCapabilities", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "adapterMetadata", void 0);
 
     if ('AdapterClass' in stuff) {
       _this.AdapterClass = stuff.AdapterClass;
+      _this.getAdapterClass = /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
+        return _regenerator.default.wrap(function _callee$(_context) {
+          while (1) {
+            switch (_context.prev = _context.next) {
+              case 0:
+                return _context.abrupt("return", stuff.AdapterClass);
+
+              case 1:
+              case "end":
+                return _context.stop();
+            }
+          }
+        }, _callee);
+      }));
     } else if ('getAdapterClass' in stuff) {
       _this.getAdapterClass = stuff.getAdapterClass;
     } else {
@@ -50,10 +71,11 @@ var AdapterType = /*#__PURE__*/function (_PluggableElementBase) {
 
     _this.configSchema = stuff.configSchema;
     _this.adapterCapabilities = stuff.adapterCapabilities || [];
+    _this.adapterMetadata = stuff.adapterMetadata;
     return _this;
   }
 
-  return AdapterType;
+  return (0, _createClass2.default)(AdapterType);
 }(_PluggableElementBase2.default);
 
 exports.default = AdapterType;

package/pluggableElementTypes/ConnectionType.js

@@ -7,6 +7,8 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -59,7 +61,7 @@ var ConnectionType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return ConnectionType;
+  return (0, _createClass2.default)(ConnectionType);
 }(_PluggableElementBase2.default);
 
 exports.default = ConnectionType;

package/pluggableElementTypes/DisplayType.js

@@ -7,6 +7,8 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -76,7 +78,7 @@ var DisplayType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return DisplayType;
+  return (0, _createClass2.default)(DisplayType);
 }(_PluggableElementBase2.default);
 
 exports.default = DisplayType;

package/pluggableElementTypes/InternetAccountType.js

@@ -7,6 +7,8 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -58,7 +60,7 @@ var InternetAccountType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return InternetAccountType;
+  return (0, _createClass2.default)(InternetAccountType);
 }(_PluggableElementBase2.default);
 
 exports.default = InternetAccountType;

package/pluggableElementTypes/PluggableElementBase.js

@@ -7,14 +7,15 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var PluggableElementBase = function PluggableElementBase(args) {
+var PluggableElementBase = /*#__PURE__*/(0, _createClass2.default)(function PluggableElementBase(args) {
   (0, _classCallCheck2.default)(this, PluggableElementBase);
   (0, _defineProperty2.default)(this, "name", '');
   this.name = args.name;
-};
-
+});
 exports.default = PluggableElementBase;

package/pluggableElementTypes/RpcMethodType.js

@@ -43,9 +43,9 @@ function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o =
 
 function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
@@ -63,9 +63,7 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
     _this = _super.call(this, {
       name: ''
     });
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "pluginManager", void 0);
     (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'UNKNOWN');
-    _this.pluginManager = pluginManager;
     return _this;
   }
 

package/pluggableElementTypes/TextSearchAdapterType.js

@@ -7,6 +7,8 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -49,7 +51,7 @@ var TextSearchAdapterType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return TextSearchAdapterType;
+  return (0, _createClass2.default)(TextSearchAdapterType);
 }(_PluggableElementBase2.default);
 
 exports.default = TextSearchAdapterType;

package/pluggableElementTypes/WidgetType.js

@@ -7,6 +7,8 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.default = void 0;
 
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
@@ -58,7 +60,7 @@ var WidgetType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return WidgetType;
+  return (0, _createClass2.default)(WidgetType);
 }(_PluggableElementBase2.default);
 
 exports.default = WidgetType;

package/pluggableElementTypes/index.d.ts

@@ -7,6 +7,9 @@ import DisplayType from './DisplayType';
 import ViewType from './ViewType';
 import RpcMethodType from './RpcMethodType';
 import InternetAccountType from './InternetAccountType';
-import TextSearchAdapter from './TextSearchAdapterType';
-export declare type PluggableElementType = AdapterType | ConnectionType | RendererType | WidgetType | TrackType | DisplayType | ViewType | RpcMethodType | InternetAccountType | TextSearchAdapter;
-export declare type PluggableElementMember = keyof AdapterType | keyof ConnectionType | keyof RendererType | keyof WidgetType | keyof TrackType | keyof DisplayType | keyof ViewType | keyof RpcMethodType | keyof InternetAccountType | keyof TextSearchAdapter;
+import TextSearchAdapterType from './TextSearchAdapterType';
+export * from './renderers';
+export * from './models';
+export { AdapterType, ConnectionType, RendererType, WidgetType, TrackType, DisplayType, ViewType, RpcMethodType, InternetAccountType, TextSearchAdapterType, };
+export declare type PluggableElementType = AdapterType | ConnectionType | RendererType | WidgetType | TrackType | DisplayType | ViewType | RpcMethodType | InternetAccountType | TextSearchAdapterType;
+export declare type PluggableElementMember = keyof AdapterType | keyof ConnectionType | keyof RendererType | keyof WidgetType | keyof TrackType | keyof DisplayType | keyof ViewType | keyof RpcMethodType | keyof InternetAccountType | keyof TextSearchAdapterType;

package/pluggableElementTypes/index.js

@@ -1 +1,127 @@
-"use strict";
+"use strict";
+
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+var _exportNames = {
+  AdapterType: true,
+  ConnectionType: true,
+  RendererType: true,
+  WidgetType: true,
+  TrackType: true,
+  DisplayType: true,
+  ViewType: true,
+  RpcMethodType: true,
+  InternetAccountType: true,
+  TextSearchAdapterType: true
+};
+Object.defineProperty(exports, "AdapterType", {
+  enumerable: true,
+  get: function get() {
+    return _AdapterType.default;
+  }
+});
+Object.defineProperty(exports, "ConnectionType", {
+  enumerable: true,
+  get: function get() {
+    return _ConnectionType.default;
+  }
+});
+Object.defineProperty(exports, "DisplayType", {
+  enumerable: true,
+  get: function get() {
+    return _DisplayType.default;
+  }
+});
+Object.defineProperty(exports, "InternetAccountType", {
+  enumerable: true,
+  get: function get() {
+    return _InternetAccountType.default;
+  }
+});
+Object.defineProperty(exports, "RendererType", {
+  enumerable: true,
+  get: function get() {
+    return _RendererType.default;
+  }
+});
+Object.defineProperty(exports, "RpcMethodType", {
+  enumerable: true,
+  get: function get() {
+    return _RpcMethodType.default;
+  }
+});
+Object.defineProperty(exports, "TextSearchAdapterType", {
+  enumerable: true,
+  get: function get() {
+    return _TextSearchAdapterType.default;
+  }
+});
+Object.defineProperty(exports, "TrackType", {
+  enumerable: true,
+  get: function get() {
+    return _TrackType.default;
+  }
+});
+Object.defineProperty(exports, "ViewType", {
+  enumerable: true,
+  get: function get() {
+    return _ViewType.default;
+  }
+});
+Object.defineProperty(exports, "WidgetType", {
+  enumerable: true,
+  get: function get() {
+    return _WidgetType.default;
+  }
+});
+
+var _AdapterType = _interopRequireDefault(require("./AdapterType"));
+
+var _ConnectionType = _interopRequireDefault(require("./ConnectionType"));
+
+var _RendererType = _interopRequireDefault(require("./renderers/RendererType"));
+
+var _WidgetType = _interopRequireDefault(require("./WidgetType"));
+
+var _TrackType = _interopRequireDefault(require("./TrackType"));
+
+var _DisplayType = _interopRequireDefault(require("./DisplayType"));
+
+var _ViewType = _interopRequireDefault(require("./ViewType"));
+
+var _RpcMethodType = _interopRequireDefault(require("./RpcMethodType"));
+
+var _InternetAccountType = _interopRequireDefault(require("./InternetAccountType"));
+
+var _TextSearchAdapterType = _interopRequireDefault(require("./TextSearchAdapterType"));
+
+var _renderers = require("./renderers");
+
+Object.keys(_renderers).forEach(function (key) {
+  if (key === "default" || key === "__esModule") return;
+  if (Object.prototype.hasOwnProperty.call(_exportNames, key)) return;
+  if (key in exports && exports[key] === _renderers[key]) return;
+  Object.defineProperty(exports, key, {
+    enumerable: true,
+    get: function get() {
+      return _renderers[key];
+    }
+  });
+});
+
+var _models = require("./models");
+
+Object.keys(_models).forEach(function (key) {
+  if (key === "default" || key === "__esModule") return;
+  if (Object.prototype.hasOwnProperty.call(_exportNames, key)) return;
+  if (key in exports && exports[key] === _models[key]) return;
+  Object.defineProperty(exports, key, {
+    enumerable: true,
+    get: function get() {
+      return _models[key];
+    }
+  });
+});

package/pluggableElementTypes/models/BaseDisplayModel.js

@@ -17,9 +17,9 @@ var _tracks = require("../../util/tracks");
 
 var _mst = require("../../util/types/mst");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 var BaseDisplay = _mobxStateTree.types.model('BaseDisplay', {
   id: _mst.ElementId,

package/pluggableElementTypes/models/BaseTrackModel.js

@@ -25,9 +25,9 @@ var _types = require("../../util/types");
 
 var _mst = require("../../util/types/mst");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 // these MST models only exist for tracks that are *shown*.
 // they should contain only UI state for the track, and have
@@ -86,7 +86,8 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
 
       get canConfigure() {
         var session = (0, _util.getSession)(self);
-        return (0, _types.isSessionModelWithConfigEditing)(session) && (session.adminMode || // @ts-ignore
+        return (0, _types.isSessionModelWithConfigEditing)(session) && ( // @ts-ignore
+        session.adminMode || // @ts-ignore
         session.sessionTracks.find(function (track) {
           return track.trackId === self.configuration.trackId;
         }));

package/pluggableElementTypes/models/BaseViewModel.js

@@ -12,11 +12,15 @@ var _mst = require("../../util/types/mst");
 var BaseViewModel = _mobxStateTree.types.model('BaseView', {
   id: _mst.ElementId,
   displayName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
-}).volatile(function () {
+}).volatile(function
+  /* self */
+() {
   return {
     width: 800
   };
-}).views(function () {
+}).views(function
+  /* self */
+() {
   return {
     menuItems: function menuItems() {
       return [];

package/pluggableElementTypes/models/InternetAccountModel.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { Instance } from 'mobx-state-tree';
-import { GenericFilehandle } from 'generic-filehandle';
+import { RemoteFileWithRangeCache } from '../../util/io';
 import { FileLocation, UriLocation, AnyReactComponentType } from '@jbrowse/core/util/types';
 export declare const InternetAccount: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -15,7 +15,7 @@ export declare const InternetAccount: import("mobx-state-tree").IModelType<{
     readonly selectorLabel: string | undefined;
     handlesLocation(location: FileLocation): boolean;
 } & {
-    openLocation(location: UriLocation): GenericFilehandle;
+    openLocation(location: UriLocation): RemoteFileWithRangeCache;
     getPreAuthorizationInformation(location: UriLocation): Promise<{
         internetAccountType: string;
     }>;

package/pluggableElementTypes/models/baseTrackConfig.js

@@ -13,9 +13,9 @@ var _mobxStateTree = require("mobx-state-tree");
 
 var _configuration = require("../../configuration");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function createBaseTrackConfig(pluginManager) {
   return (0, _configuration.ConfigurationSchema)('BaseTrack', {