@jbrowse/bandage-core 9.1.0 → 9.3.0

package/dist/index.js

@@ -1,6 +1,9 @@
 import {
   wheelZoomFactor
 } from "./chunks/chunk-TDQLINVI.js";
+import {
+  tubeMapNodeColors
+} from "./chunks/chunk-A4MYLGKG.js";
 import {
   connectorAt,
   drawLitConnector,
@@ -14,6 +17,7 @@ import {
   tubeMapPicture,
   tubeMapTrackAt
 } from "./chunks/chunk-75HR3756.js";
+import "./chunks/chunk-XXT2JCAC.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
@@ -26,10 +30,6 @@ import {
   drawTubeMapGenes,
   tubeMapGenes
 } from "./chunks/chunk-WEDZ76AK.js";
-import "./chunks/chunk-XXT2JCAC.js";
-import {
-  tubeMapNodeColors
-} from "./chunks/chunk-FFFQNQUI.js";
 import {
   drawTubeMapRuler,
   referenceBoxes,
@@ -38,11 +38,11 @@ import {
 } from "./chunks/chunk-BPRXQ2SS.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-RRZMMYBG.js";
+} from "./chunks/chunk-BV64PQ2C.js";
 import {
   graphBubbles,
   superbubblesFromGraph
-} from "./chunks/chunk-FUVI4WQP.js";
+} from "./chunks/chunk-ROYHPOYF.js";
 import {
   bubbleSubgraph
 } from "./chunks/chunk-VHW7FDHU.js";
@@ -54,32 +54,40 @@ import {
 } from "./chunks/chunk-BXEPA4KS.js";
 import {
   bubbleHalos
-} from "./chunks/chunk-2AWUWGAD.js";
-import {
-  bubblesFromGraph
-} from "./chunks/chunk-GOZYKNQ2.js";
+} from "./chunks/chunk-ABOZYAN5.js";
 import {
   BUBBLE_KIND_COLORS,
   BUBBLE_KIND_NAMES,
   bubbleSegmentIds,
   classifyBubble
 } from "./chunks/chunk-XKWD2RY3.js";
+import {
+  bubblesFromGraph
+} from "./chunks/chunk-GOZYKNQ2.js";
 import "./chunks/chunk-FX4RDMDN.js";
 import {
   REFERENCE_STRIP_ZONE_PX,
   drawReferenceStrip,
   referenceStripBlocks,
   stripBlockAt
-} from "./chunks/chunk-W253V6RR.js";
+} from "./chunks/chunk-CVYDR2OP.js";
+import {
+  LAYOUT_ENGINES,
+  layoutEngine
+} from "./chunks/chunk-6EJIU6IA.js";
+import {
+  stressLayout
+} from "./chunks/chunk-UNOE2NDN.js";
+import "./chunks/chunk-LYJ4US66.js";
 import {
   FORCE_LAYOUT_LABEL,
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WNUZP3WQ.js";
+} from "./chunks/chunk-M7SRZJ32.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-INJ2UVOT.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-C44YRP5F.js";
@@ -88,6 +96,9 @@ import "./chunks/chunk-HNQPEMYE.js";
 import {
   LAYOUT_QUALITIES
 } from "./chunks/chunk-K5SIJGAE.js";
+import {
+  loadBandage
+} from "./chunks/chunk-7XHHVYG7.js";
 import {
   HPRC_GBZ,
   cutGbzRegion,
@@ -106,26 +117,9 @@ import {
   edgeHoverText,
   regionLabel
 } from "./chunks/chunk-AZFVORTC.js";
-import {
-  LAYOUT_ENGINES,
-  layoutEngine
-} from "./chunks/chunk-6EJIU6IA.js";
-import {
-  stressLayout
-} from "./chunks/chunk-UNOE2NDN.js";
-import "./chunks/chunk-LYJ4US66.js";
-import {
-  loadBandage
-} from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-3TGUKQWQ.js";
-import {
-  layoutGeometryInputs
-} from "./chunks/chunk-LOCJN3BZ.js";
-import {
-  svgCanvas
-} from "./chunks/chunk-47DYCZOK.js";
+} from "./chunks/chunk-TL3TYSCP.js";
 import {
   WALK_STRIP_CEILING_PX,
   cutsWholeWalks,
@@ -137,7 +131,19 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-WDTXW7T2.js";
+} from "./chunks/chunk-UD5FOCI2.js";
+import {
+  Canvas2DRenderer
+} from "./chunks/chunk-WBCOREDZ.js";
+import {
+  getDpr
+} from "./chunks/chunk-4BYTEJGW.js";
+import {
+  layoutGeometryInputs
+} from "./chunks/chunk-LOCJN3BZ.js";
+import {
+  svgCanvas
+} from "./chunks/chunk-47DYCZOK.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -164,26 +170,28 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-MIW3HYPE.js";
-import {
-  Canvas2DRenderer
-} from "./chunks/chunk-WBCOREDZ.js";
+} from "./chunks/chunk-GFRPX6M2.js";
 import {
-  getDpr
-} from "./chunks/chunk-4BYTEJGW.js";
+  genePins
+} from "./chunks/chunk-BUBZ32IC.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
   exonStretches
 } from "./chunks/chunk-3S3YVOJ7.js";
 import {
-  genePins
-} from "./chunks/chunk-BUBZ32IC.js";
+  axisScaleOf,
+  contains,
+  padded,
+  screenToLayout,
+  viewportOf,
+  zoomAbout
+} from "./chunks/chunk-XKM5OHQQ.js";
 import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-MBB7ATM6.js";
+} from "./chunks/chunk-LFKMASER.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -191,7 +199,7 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-DPV2CUIE.js";
+} from "./chunks/chunk-XPT66H6H.js";
 import {
   rangeText,
   walkKey,
@@ -202,24 +210,16 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-6ZNQJ5ZD.js";
+} from "./chunks/chunk-OXTR3BVF.js";
 import {
   REFERENCE_RAMP_MAX_HUE,
   buildGeometry,
   computeReferenceRamp
-} from "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import {
   version
-} from "./chunks/chunk-UID3QBWH.js";
-import {
-  axisScaleOf,
-  contains,
-  padded,
-  screenToLayout,
-  viewportOf,
-  zoomAbout
-} from "./chunks/chunk-MXDQGA7A.js";
+} from "./chunks/chunk-BTMPPLDF.js";
 import {
   walkRowLabels,
   walkRowsExtent
@@ -228,6 +228,11 @@ import {
   filterSamples,
   walkRows
 } from "./chunks/chunk-MAUEPAMG.js";
+import {
+  pathColorsLegible,
+  pathLegend,
+  walkLabelsOf
+} from "./chunks/chunk-7GBL7SJY.js";
 import {
   NODE_WIDTHS,
   maxNodeWidthPx,
@@ -235,11 +240,6 @@ import {
   nodeInk,
   nodeWidthPx
 } from "./chunks/chunk-PBENCR5L.js";
-import {
-  pathColorsLegible,
-  pathLegend,
-  walkLabelsOf
-} from "./chunks/chunk-7GBL7SJY.js";
 import {
   WELL_KNOWN_SAMPLES,
   assemblyWalk,
@@ -255,7 +255,7 @@ import {
   LEGEND_INSET_PX,
   geneCoverageNote,
   layoutLabels
-} from "./chunks/chunk-GJMC3PGM.js";
+} from "./chunks/chunk-3FOOZ5VL.js";
 import {
   findHoveredEdge,
   findHoveredNode
@@ -290,7 +290,7 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-XLCTQHBE.js";
+} from "./chunks/chunk-BLRJ6IGK.js";
 import {
   ENGINE_DEFAULTS,
   FIT_PADDING,
@@ -303,16 +303,17 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-OOXIMURX.js";
+} from "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
+import "./chunks/chunk-OCMBULGN.js";
 import {
   graphFromTables,
   graphTablesGFA
 } from "./chunks/chunk-OA7RIMZ2.js";
-import "./chunks/chunk-OCMBULGN.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import {
@@ -321,7 +322,6 @@ import {
   panSNSample
 } from "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import {
   BUBBLE_SPREADS
 } from "./chunks/chunk-UVBGRJQX.js";

package/dist/labelLayout.js

@@ -4,7 +4,7 @@ import {
   geneCoverageNote,
   geneLabelCandidates,
   layoutLabels
-} from "./chunks/chunk-GJMC3PGM.js";
+} from "./chunks/chunk-3FOOZ5VL.js";
 import "./chunks/chunk-FP4H7SFT.js";
 import "./chunks/chunk-MLSWIMZO.js";
 import "./chunks/chunk-WFB5TXRA.js";

package/dist/layout/forceCache.js

@@ -1,18 +1,18 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-RRZMMYBG.js";
-import "../chunks/chunk-OOXIMURX.js";
+} from "../chunks/chunk-BV64PQ2C.js";
+import "../chunks/chunk-ZGRYFUXE.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
-import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-OCMBULGN.js";
+import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-CDLPYR5O.js";
+import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-ST2IBUAN.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-TAMCZHLW.js";
-import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-UVBGRJQX.js";
 import "../chunks/chunk-6JEWNXCQ.js";
 import "../chunks/chunk-N6FECAXP.js";

package/dist/layout/trimToWindow.js

@@ -94,6 +94,19 @@ function trimVisits(visits, paths, spans, nameOf) {
   });
   return out;
 }
+function clipToWindow(graph, window, reachBp) {
+  const nodes = graph.nodes.map((node) => {
+    if (!isBackbone(node)) {
+      return node;
+    }
+    const from = node.stable.start;
+    const to = from + node.length;
+    const [start, end] = overlapsWindow(node, window) ? [Math.max(from, window.start), Math.min(to, window.end)] : to <= window.start ? [Math.max(from, to - reachBp), to] : [from, Math.min(to, from + reachBp)];
+    return start === from && end === to ? node : { ...node, length: end - start, stable: { ...node.stable, start } };
+  });
+  return nodes.some((node, i) => node !== graph.nodes[i]) ? { ...graph, nodes } : graph;
+}
 export {
+  clipToWindow,
   trimToWindow
 };

package/dist/layout/walkRowDraw.js

@@ -26,12 +26,12 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-MIW3HYPE.js";
-import "../chunks/chunk-6ZNQJ5ZD.js";
-import "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-GFRPX6M2.js";
+import "../chunks/chunk-OXTR3BVF.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/layout/walkStrip.js

@@ -9,15 +9,15 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-WDTXW7T2.js";
+} from "../chunks/chunk-UD5FOCI2.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-MIW3HYPE.js";
-import "../chunks/chunk-6ZNQJ5ZD.js";
-import "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-GFRPX6M2.js";
+import "../chunks/chunk-OXTR3BVF.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/layoutModes.js

@@ -4,10 +4,10 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WNUZP3WQ.js";
+} from "./chunks/chunk-M7SRZJ32.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-INJ2UVOT.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-C44YRP5F.js";

package/dist/pipeline.js

@@ -11,18 +11,18 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-OOXIMURX.js";
+} from "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
-import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-OCMBULGN.js";
+import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-N6FECAXP.js";

package/dist/referenceRampCss.js

@@ -4,11 +4,11 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-6ZNQJ5ZD.js";
-import "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-OXTR3BVF.js";
+import "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-WFB5TXRA.js";
 import "./chunks/chunk-3ZZSX5HN.js";
 import "./chunks/chunk-AB35TJST.js";

package/dist/referenceStrip.js

@@ -7,11 +7,11 @@ import {
   stripBlockAt,
   stripOverhang,
   stripPixels
-} from "./chunks/chunk-W253V6RR.js";
-import "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-CVYDR2OP.js";
+import "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-WFB5TXRA.js";
 import "./chunks/chunk-3ZZSX5HN.js";
 import "./chunks/chunk-AB35TJST.js";

package/dist/renderer/GeometryBuilder.js

@@ -11,10 +11,10 @@ import {
   endTangent,
   getNodeColor,
   hslToRgb
-} from "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/tubeMap/nodeColors.js

@@ -1,10 +1,10 @@
 import {
   tubeMapNodeColors
-} from "../chunks/chunk-FFFQNQUI.js";
-import "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-A4MYLGKG.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/types/bubbles/bubbleHalos.d.ts

@@ -10,6 +10,7 @@ export interface BubbleHalo {
     members: number;
     nodeIds: string[];
     whole: boolean;
+    tick: boolean;
     routes: RouteLabel[];
 }
 export interface RouteLabel {
@@ -19,4 +20,5 @@ export interface RouteLabel {
 }
 export declare const WHOLE_FRACTION = 0.9;
 export declare function coversGraph(members: number, nodes: number): boolean;
+export declare const SMALL_VARIANT_BP = 50;
 export declare function bubbleHalos(graph: Graph, bubbles: MinigraphBubble[], positions: Record<string, NodeSegment[]>, walkLabel?: (name: string) => string, repeats?: readonly RepeatSpan[]): BubbleHalo[];

package/dist/types/bubbles/superbubbles.d.ts

@@ -1,5 +1,4 @@
 import type { MinigraphBubble } from './bubbleLine.js';
 import type { Graph } from '../types.js';
-export declare const MAX_SUPERBUBBLES = 50;
 export declare function superbubblesFromGraph(graph: Graph, span?: MinigraphBubble): MinigraphBubble[];
 export declare function graphBubbles(graph: Graph, span?: MinigraphBubble): MinigraphBubble[];

package/dist/types/cli/fold.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/types/foldVariants.d.ts

@@ -0,0 +1,2 @@
+import type { Graph } from './types.js';
+export declare function foldVariants(graph: Graph, belowBp: number): Graph;

package/dist/types/gfa/writeRgfa.d.ts

@@ -0,0 +1,2 @@
+import type { Graph } from '../types.js';
+export declare function writeRgfa(graph: Graph): string;

package/dist/types/labelLayout.d.ts

@@ -38,8 +38,14 @@ export interface LabelLayoutSource {
     alleleDeletions: AlleleDeletion[];
     positionsVersion: number;
 }
+export interface BubbleTick {
+    item: BubbleHalo;
+    x: number;
+    y: number;
+}
 export interface LabelLayout {
     bubbles: PlacedLabel<BubbleHalo>[];
+    ticks: BubbleTick[];
     genes: PlacedLabel<GenePin>[];
     routes: PlacedLabel<{
         halo: BubbleHalo;

package/dist/types/layout/trimToWindow.d.ts

@@ -3,3 +3,7 @@ export declare function trimToWindow(graph: Graph, window: {
     start: number;
     end: number;
 }): Graph;
+export declare function clipToWindow(graph: Graph, window: {
+    start: number;
+    end: number;
+}, reachBp: number): Graph;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "9.1.0";
+export declare const version = "9.3.0";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-UID3QBWH.js";
+} from "./chunks/chunk-BTMPPLDF.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,19 +5,19 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-MXDQGA7A.js";
-import "./chunks/chunk-OOXIMURX.js";
+} from "./chunks/chunk-XKM5OHQQ.js";
+import "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
-import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-OCMBULGN.js";
+import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-N6FECAXP.js";

package/dist/walkEncoding.js

@@ -9,11 +9,11 @@ import {
   schemeColor,
   schemeCss,
   schemeRgb
-} from "./chunks/chunk-DPV2CUIE.js";
-import "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-XPT66H6H.js";
+import "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-WFB5TXRA.js";
 import "./chunks/chunk-3ZZSX5HN.js";
 import "./chunks/chunk-AB35TJST.js";

package/dist/walkHighlight.js

@@ -2,12 +2,12 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-MBB7ATM6.js";
-import "./chunks/chunk-DPV2CUIE.js";
-import "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-LFKMASER.js";
+import "./chunks/chunk-XPT66H6H.js";
+import "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-WFB5TXRA.js";
 import "./chunks/chunk-3ZZSX5HN.js";
 import "./chunks/chunk-AB35TJST.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "9.1.0",
+  "version": "9.3.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {
@@ -28,7 +28,8 @@
     "access": "public"
   },
   "bin": {
-    "bandage-figure": "dist/cli/figure.js"
+    "bandage-figure": "dist/cli/figure.js",
+    "bandage-fold": "dist/cli/fold.js"
   },
   "files": [
     "dist"

package/dist/chunks/{chunk-HBEKUQO4.js → chunk-BR25DGIJ.js}

@@ -3,16 +3,16 @@ import {
   fadeAbgr,
   packAbgr
 } from "./chunk-G2FD7S3C.js";
-import {
-  meanDepth,
-  nodeWidthPx
-} from "./chunk-PBENCR5L.js";
 import {
   PATH_LIGHTNESS,
   PATH_SATURATION,
   nameHue,
   pathHueAt
 } from "./chunk-7GBL7SJY.js";
+import {
+  meanDepth,
+  nodeWidthPx
+} from "./chunk-PBENCR5L.js";
 import {
   baseEdgeCurves
 } from "./chunk-WFB5TXRA.js";

package/dist/chunks/{chunk-WNUZP3WQ.js → chunk-M7SRZJ32.js}

@@ -1,12 +1,12 @@
+import {
+  sampleRowLayout
+} from "./chunk-LOEA5IHZ.js";
 import {
   hasTubeMapBackbone,
   hasTubeMapPaths,
   tubeMapLayout,
   tubeMapReferenceLayout
 } from "./chunk-INJ2UVOT.js";
-import {
-  sampleRowLayout
-} from "./chunk-LOEA5IHZ.js";
 import {
   anchoredLayout
 } from "./chunk-L3O7AWLI.js";