@jbrowse/bandage-core 6.2.0 → 7.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. package/dist/chunks/{chunk-GOY6REMT.js → chunk-2LQ5BWT7.js} +1 -1
  2. package/dist/chunks/{chunk-5HF753RL.js → chunk-2WA4EY25.js} +27 -23
  3. package/dist/chunks/{chunk-EZPBJPK6.js → chunk-3JANT2SW.js} +6 -3
  4. package/dist/chunks/{chunk-N62KBLFC.js → chunk-3ZZSX5HN.js} +1 -1
  5. package/dist/chunks/{chunk-R6ZUK4Y3.js → chunk-4FQTTG5F.js} +1 -1
  6. package/dist/chunks/{chunk-YFRTTBCZ.js → chunk-6UFS3EWI.js} +3 -3
  7. package/dist/chunks/{chunk-M6SAUIYR.js → chunk-AWCMVPVP.js} +1 -1
  8. package/dist/chunks/{chunk-P2KU2TXS.js → chunk-CNQSHEBS.js} +1 -1
  9. package/dist/chunks/{chunk-CS3E4ETM.js → chunk-DRA7733Q.js} +1 -1
  10. package/dist/chunks/{chunk-X5L37W4J.js → chunk-E7FWQQHP.js} +1 -1
  11. package/dist/chunks/{chunk-3GMVZMKD.js → chunk-EXSXBIMH.js} +1 -1
  12. package/dist/chunks/{chunk-YMSSF2RK.js → chunk-FP4H7SFT.js} +1 -1
  13. package/dist/chunks/{chunk-DKOB2OPC.js → chunk-GJMC3PGM.js} +3 -3
  14. package/dist/chunks/{chunk-T43W7NKK.js → chunk-JKXE6CIP.js} +2 -2
  15. package/dist/chunks/{chunk-7R2UGY4I.js → chunk-KREASK3Z.js} +7 -13
  16. package/dist/chunks/{chunk-HE3NRWH7.js → chunk-MAPRJ2H2.js} +1 -1
  17. package/dist/chunks/{chunk-A7VOULBP.js → chunk-MH5IA57M.js} +1 -1
  18. package/dist/chunks/{chunk-MREQ7GIA.js → chunk-MLSWIMZO.js} +1 -1
  19. package/dist/chunks/{chunk-4EMPBO7S.js → chunk-N6FECAXP.js} +51 -1
  20. package/dist/chunks/{chunk-CTSBC2O6.js → chunk-OWFPAIJI.js} +1 -1
  21. package/dist/chunks/{chunk-6CO564AN.js → chunk-TQ7VCGJR.js} +1 -1
  22. package/dist/chunks/{chunk-YQZWW2V6.js → chunk-UGD6ZMOF.js} +31 -6
  23. package/dist/chunks/{chunk-GD7FYNGS.js → chunk-VECR253P.js} +1 -1
  24. package/dist/chunks/{chunk-VUBLSA6P.js → chunk-VST5SR4C.js} +2 -2
  25. package/dist/chunks/{chunk-Y3IOTZJA.js → chunk-WFB5TXRA.js} +1 -1
  26. package/dist/chunks/{chunk-STNG3Y5X.js → chunk-YZ5CCEDH.js} +0 -30
  27. package/dist/cli/figure.js +23 -23
  28. package/dist/deletionEdges.js +5 -1
  29. package/dist/figure.js +20 -20
  30. package/dist/graphLabels.js +2 -2
  31. package/dist/index.js +37 -27
  32. package/dist/labelLayout.js +6 -6
  33. package/dist/layout/deletionRoutes.js +1 -3
  34. package/dist/layout/tubeMapLayout.js +4 -4
  35. package/dist/layout/walkRowDraw.js +17 -7
  36. package/dist/layout/walkRowLayout.js +1 -1
  37. package/dist/layout/walkStrip.js +10 -9
  38. package/dist/layoutModes.js +6 -6
  39. package/dist/pathColors.js +3 -3
  40. package/dist/pipeline.js +3 -3
  41. package/dist/referenceRampCss.js +6 -6
  42. package/dist/referenceStrip.js +6 -6
  43. package/dist/renderer/GeometryBuilder.js +5 -5
  44. package/dist/tubeMap/axis.js +3 -3
  45. package/dist/tubeMap/coarsen.js +4 -4
  46. package/dist/tubeMap/genes.js +4 -4
  47. package/dist/tubeMap/nodeColors.js +6 -6
  48. package/dist/types/deletionEdges.d.ts +7 -0
  49. package/dist/types/figure.d.ts +2 -1
  50. package/dist/types/index.d.ts +4 -4
  51. package/dist/types/labelLayout.d.ts +0 -1
  52. package/dist/types/layout/deletionRoutes.d.ts +0 -1
  53. package/dist/types/layout/walkRowDraw.d.ts +11 -0
  54. package/dist/types/layout/walkRowLayout.d.ts +2 -1
  55. package/dist/types/layout/walkStrip.d.ts +1 -1
  56. package/dist/types/version.d.ts +1 -1
  57. package/dist/util/SpatialIndex.js +3 -3
  58. package/dist/util/edgeCurves.js +2 -2
  59. package/dist/util/hitDetection.js +4 -4
  60. package/dist/version.js +1 -1
  61. package/dist/viewport.js +4 -4
  62. package/dist/walkEncoding.js +6 -6
  63. package/dist/walkHighlight.js +7 -7
  64. package/dist/walkKey.js +3 -3
  65. package/package.json +1 -1
package/dist/cli/figure.js CHANGED
@@ -11,8 +11,8 @@ import "../chunks/chunk-O4TGF4WS.js";
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  import {
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  LAYOUT_MODES,
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  layoutModeByValue
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- } from "../chunks/chunk-T43W7NKK.js";
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- import "../chunks/chunk-R6ZUK4Y3.js";
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+ } from "../chunks/chunk-JKXE6CIP.js";
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+ import "../chunks/chunk-4FQTTG5F.js";
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  import "../chunks/chunk-TEDQJPMI.js";
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  import "../chunks/chunk-LOEA5IHZ.js";
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  import "../chunks/chunk-L3O7AWLI.js";
@@ -23,55 +23,55 @@ import "../chunks/chunk-C44YRP5F.js";
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  import "../chunks/chunk-7XHHVYG7.js";
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  import {
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  figureSvg
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- } from "../chunks/chunk-5HF753RL.js";
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+ } from "../chunks/chunk-2WA4EY25.js";
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  import "../chunks/chunk-47DYCZOK.js";
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- import "../chunks/chunk-7R2UGY4I.js";
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+ import "../chunks/chunk-KREASK3Z.js";
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  import {
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  genesOnRow,
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  placeRowGenes
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- } from "../chunks/chunk-YQZWW2V6.js";
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+ } from "../chunks/chunk-UGD6ZMOF.js";
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  import "../chunks/chunk-CH3DLBUT.js";
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  import "../chunks/chunk-4BYTEJGW.js";
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  import "../chunks/chunk-3S3YVOJ7.js";
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  import "../chunks/chunk-BUBZ32IC.js";
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- import "../chunks/chunk-HE3NRWH7.js";
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- import "../chunks/chunk-M6SAUIYR.js";
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- import "../chunks/chunk-A7VOULBP.js";
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- import "../chunks/chunk-6CO564AN.js";
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- import "../chunks/chunk-GOY6REMT.js";
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+ import "../chunks/chunk-MAPRJ2H2.js";
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+ import "../chunks/chunk-AWCMVPVP.js";
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+ import "../chunks/chunk-MH5IA57M.js";
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+ import "../chunks/chunk-TQ7VCGJR.js";
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+ import "../chunks/chunk-2LQ5BWT7.js";
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  import {
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  forceLayout,
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  loadGraph
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- } from "../chunks/chunk-YFRTTBCZ.js";
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+ } from "../chunks/chunk-6UFS3EWI.js";
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  import "../chunks/chunk-PUG7LXDF.js";
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  import "../chunks/chunk-IGVV37VI.js";
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  import "../chunks/chunk-72N5DJHZ.js";
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  import "../chunks/chunk-QYBZZI5H.js";
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  import "../chunks/chunk-CDLPYR5O.js";
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- import "../chunks/chunk-STNG3Y5X.js";
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- import "../chunks/chunk-GD7FYNGS.js";
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- import "../chunks/chunk-VUBLSA6P.js";
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+ import "../chunks/chunk-YZ5CCEDH.js";
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+ import "../chunks/chunk-VECR253P.js";
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+ import "../chunks/chunk-VST5SR4C.js";
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  import "../chunks/chunk-UMNCCYBN.js";
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  import "../chunks/chunk-PBENCR5L.js";
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- import "../chunks/chunk-DKOB2OPC.js";
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- import "../chunks/chunk-YMSSF2RK.js";
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- import "../chunks/chunk-MREQ7GIA.js";
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- import "../chunks/chunk-Y3IOTZJA.js";
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- import "../chunks/chunk-EZPBJPK6.js";
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+ import "../chunks/chunk-GJMC3PGM.js";
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+ import "../chunks/chunk-FP4H7SFT.js";
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+ import "../chunks/chunk-MLSWIMZO.js";
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+ import "../chunks/chunk-WFB5TXRA.js";
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+ import "../chunks/chunk-3JANT2SW.js";
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  import {
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  filterSamples,
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  walkRows
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  } from "../chunks/chunk-SZNZ2T6D.js";
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- import "../chunks/chunk-X5L37W4J.js";
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+ import "../chunks/chunk-E7FWQQHP.js";
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  import "../chunks/chunk-ES2N6V56.js";
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  import "../chunks/chunk-ST2IBUAN.js";
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- import "../chunks/chunk-N62KBLFC.js";
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+ import "../chunks/chunk-3ZZSX5HN.js";
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  import "../chunks/chunk-AB35TJST.js";
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  import "../chunks/chunk-TAMCZHLW.js";
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  import "../chunks/chunk-UVBGRJQX.js";
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  import "../chunks/chunk-6JEWNXCQ.js";
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  import "../chunks/chunk-JKJWSY4V.js";
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- import "../chunks/chunk-4EMPBO7S.js";
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+ import "../chunks/chunk-N6FECAXP.js";
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  import "../chunks/chunk-2CVHXFK7.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-NNODIW4U.js";
@@ -239,7 +239,7 @@ async function renderSpec(spec, base) {
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  engine: spec.engine,
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  spacing: spec.spacing,
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  componentSeparation: spec.componentSeparation,
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- showDeletionEdges: !!spec.showDeletionEdges
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+ showDeletionEdges: spec.showDeletionEdges
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  },
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  layoutEngine
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  )).result;
package/dist/deletionEdges.js CHANGED
@@ -1,13 +1,17 @@
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  import {
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  bypassedPoints,
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+ closableDeletions,
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  deletionArcCurves,
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+ deletionDrawing,
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  deletionEdges
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- } from "./chunks/chunk-4EMPBO7S.js";
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+ } from "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-FYQWPEEY.js";
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  export {
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  bypassedPoints,
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+ closableDeletions,
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  deletionArcCurves,
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+ deletionDrawing,
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  deletionEdges
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  };
package/dist/figure.js CHANGED
@@ -1,45 +1,45 @@
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  import {
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  figureSvg
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- } from "./chunks/chunk-5HF753RL.js";
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+ } from "./chunks/chunk-2WA4EY25.js";
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  import "./chunks/chunk-47DYCZOK.js";
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- import "./chunks/chunk-7R2UGY4I.js";
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- import "./chunks/chunk-YQZWW2V6.js";
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+ import "./chunks/chunk-KREASK3Z.js";
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+ import "./chunks/chunk-UGD6ZMOF.js";
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  import "./chunks/chunk-CH3DLBUT.js";
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  import "./chunks/chunk-4BYTEJGW.js";
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  import "./chunks/chunk-3S3YVOJ7.js";
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  import "./chunks/chunk-BUBZ32IC.js";
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- import "./chunks/chunk-HE3NRWH7.js";
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- import "./chunks/chunk-M6SAUIYR.js";
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- import "./chunks/chunk-A7VOULBP.js";
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- import "./chunks/chunk-6CO564AN.js";
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- import "./chunks/chunk-GOY6REMT.js";
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- import "./chunks/chunk-YFRTTBCZ.js";
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+ import "./chunks/chunk-MAPRJ2H2.js";
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+ import "./chunks/chunk-AWCMVPVP.js";
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+ import "./chunks/chunk-MH5IA57M.js";
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+ import "./chunks/chunk-TQ7VCGJR.js";
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+ import "./chunks/chunk-2LQ5BWT7.js";
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+ import "./chunks/chunk-6UFS3EWI.js";
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  import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
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- import "./chunks/chunk-STNG3Y5X.js";
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- import "./chunks/chunk-GD7FYNGS.js";
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- import "./chunks/chunk-VUBLSA6P.js";
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+ import "./chunks/chunk-YZ5CCEDH.js";
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+ import "./chunks/chunk-VECR253P.js";
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+ import "./chunks/chunk-VST5SR4C.js";
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  import "./chunks/chunk-UMNCCYBN.js";
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  import "./chunks/chunk-PBENCR5L.js";
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- import "./chunks/chunk-DKOB2OPC.js";
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- import "./chunks/chunk-YMSSF2RK.js";
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- import "./chunks/chunk-MREQ7GIA.js";
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- import "./chunks/chunk-Y3IOTZJA.js";
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- import "./chunks/chunk-EZPBJPK6.js";
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+ import "./chunks/chunk-GJMC3PGM.js";
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+ import "./chunks/chunk-FP4H7SFT.js";
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+ import "./chunks/chunk-MLSWIMZO.js";
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+ import "./chunks/chunk-WFB5TXRA.js";
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+ import "./chunks/chunk-3JANT2SW.js";
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  import "./chunks/chunk-SZNZ2T6D.js";
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- import "./chunks/chunk-X5L37W4J.js";
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+ import "./chunks/chunk-E7FWQQHP.js";
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
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- import "./chunks/chunk-N62KBLFC.js";
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+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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  import "./chunks/chunk-UVBGRJQX.js";
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  import "./chunks/chunk-6JEWNXCQ.js";
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  import "./chunks/chunk-JKJWSY4V.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-NNODIW4U.js";
package/dist/graphLabels.js CHANGED
@@ -6,10 +6,10 @@ import {
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  placeSizeLabels,
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  rowLabelBox,
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  sizeLabelCandidates
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- } from "./chunks/chunk-N62KBLFC.js";
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+ } from "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-FYQWPEEY.js";
package/dist/index.js CHANGED
@@ -22,17 +22,17 @@ import {
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  import {
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  drawTubeMapGenes,
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  tubeMapGenes
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- } from "./chunks/chunk-CTSBC2O6.js";
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+ } from "./chunks/chunk-OWFPAIJI.js";
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  import "./chunks/chunk-EJ5OZTCK.js";
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  import {
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  tubeMapNodeColors
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- } from "./chunks/chunk-P2KU2TXS.js";
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+ } from "./chunks/chunk-CNQSHEBS.js";
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  import {
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  drawTubeMapRuler,
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  referenceBoxes,
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  rulerBoxes,
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  tubeX
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- } from "./chunks/chunk-CS3E4ETM.js";
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+ } from "./chunks/chunk-DRA7733Q.js";
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  import {
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  bubbleHalos
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  } from "./chunks/chunk-ISEI2FH3.js";
@@ -60,7 +60,7 @@ import {
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  drawReferenceStrip,
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  referenceStripBlocks,
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  stripBlockAt
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- } from "./chunks/chunk-3GMVZMKD.js";
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+ } from "./chunks/chunk-EXSXBIMH.js";
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  import {
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  layoutEngine
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  } from "./chunks/chunk-L53SXJZI.js";
@@ -73,8 +73,8 @@ import {
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  LAYOUT_MODES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-T43W7NKK.js";
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- import "./chunks/chunk-R6ZUK4Y3.js";
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+ } from "./chunks/chunk-JKXE6CIP.js";
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+ import "./chunks/chunk-4FQTTG5F.js";
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  import "./chunks/chunk-TEDQJPMI.js";
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  import "./chunks/chunk-LOEA5IHZ.js";
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  import "./chunks/chunk-L3O7AWLI.js";
@@ -87,12 +87,11 @@ import {
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  } from "./chunks/chunk-7XHHVYG7.js";
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  import {
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  figureSvg
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- } from "./chunks/chunk-5HF753RL.js";
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+ } from "./chunks/chunk-2WA4EY25.js";
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  import {
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  svgCanvas
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  } from "./chunks/chunk-47DYCZOK.js";
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  import {
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- LABELLED_ROW_PX,
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  WALK_STRIP_CEILING_PX,
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  segmentAt,
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  stripGeneGaps,
@@ -101,21 +100,26 @@ import {
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  walkMarksTree,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "./chunks/chunk-7R2UGY4I.js";
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+ } from "./chunks/chunk-KREASK3Z.js";
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  import {
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  BAR_PX,
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+ CALL_TICK,
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  DISAGREES,
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  GAP_PX,
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  GENE_INK,
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+ LABELLED_ROW_PX,
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  OFF_REFERENCE,
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  ON_REFERENCE,
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  OUTSIDE_CUT,
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+ UNBACKED_TICK,
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  alongRow,
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+ callTickInk,
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  coalesceRuns,
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  genesOnRow,
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  placeRowGenes,
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  readoutPlacement,
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  rowGeneBoxes,
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+ rowPitch,
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  rowSpan,
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  runPaint,
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  unitTicks,
@@ -123,7 +127,7 @@ import {
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  walkRowsKey,
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  walkRowsKeyTree,
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  walkRowsTree
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- } from "./chunks/chunk-YQZWW2V6.js";
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+ } from "./chunks/chunk-UGD6ZMOF.js";
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  import {
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  Canvas2DRenderer
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  } from "./chunks/chunk-CH3DLBUT.js";
@@ -140,7 +144,7 @@ import {
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  } from "./chunks/chunk-BUBZ32IC.js";
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  import {
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  version
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- } from "./chunks/chunk-HE3NRWH7.js";
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+ } from "./chunks/chunk-MAPRJ2H2.js";
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  import {
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  axisScaleOf,
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  contains,
@@ -148,12 +152,12 @@ import {
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  screenToLayout,
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-M6SAUIYR.js";
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+ } from "./chunks/chunk-AWCMVPVP.js";
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  import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-A7VOULBP.js";
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+ } from "./chunks/chunk-MH5IA57M.js";
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  import {
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  WALK_FIELDS,
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  WALK_SCHEMES,
@@ -161,12 +165,12 @@ import {
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  encodingSwatchCss,
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  resolveEncoding,
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  schemeCss
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- } from "./chunks/chunk-6CO564AN.js";
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+ } from "./chunks/chunk-TQ7VCGJR.js";
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  import {
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  rangeText,
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  walkKey,
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  walkPosition
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- } from "./chunks/chunk-GOY6REMT.js";
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+ } from "./chunks/chunk-2LQ5BWT7.js";
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  import {
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  FIT_PADDING,
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  clampZoom,
@@ -177,24 +181,24 @@ import {
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  forceLayout,
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  layoutExtent,
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  loadGraph
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- } from "./chunks/chunk-YFRTTBCZ.js";
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+ } from "./chunks/chunk-6UFS3EWI.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-CDLPYR5O.js";
186
- import "./chunks/chunk-STNG3Y5X.js";
190
+ import "./chunks/chunk-YZ5CCEDH.js";
187
191
  import {
188
192
  RAMP_GRADIENT_CSS,
189
193
  rampHue,
190
194
  rampHueCss,
191
195
  rampStops
192
- } from "./chunks/chunk-GD7FYNGS.js";
196
+ } from "./chunks/chunk-VECR253P.js";
193
197
  import {
194
198
  REFERENCE_RAMP_MAX_HUE,
195
199
  buildGeometry,
196
200
  computeReferenceRamp
197
- } from "./chunks/chunk-VUBLSA6P.js";
201
+ } from "./chunks/chunk-VST5SR4C.js";
198
202
  import "./chunks/chunk-UMNCCYBN.js";
199
203
  import {
200
204
  NODE_WIDTHS,
@@ -208,16 +212,16 @@ import {
208
212
  LEGEND_INSET_PX,
209
213
  geneCoverageNote,
210
214
  layoutLabels
211
- } from "./chunks/chunk-DKOB2OPC.js";
215
+ } from "./chunks/chunk-GJMC3PGM.js";
212
216
  import {
213
217
  findHoveredEdge,
214
218
  findHoveredNode
215
- } from "./chunks/chunk-YMSSF2RK.js";
216
- import "./chunks/chunk-MREQ7GIA.js";
217
- import "./chunks/chunk-Y3IOTZJA.js";
219
+ } from "./chunks/chunk-FP4H7SFT.js";
220
+ import "./chunks/chunk-MLSWIMZO.js";
221
+ import "./chunks/chunk-WFB5TXRA.js";
218
222
  import {
219
223
  walkRowsExtent
220
- } from "./chunks/chunk-EZPBJPK6.js";
224
+ } from "./chunks/chunk-3JANT2SW.js";
221
225
  import {
222
226
  filterSamples,
223
227
  walkRows
@@ -225,12 +229,12 @@ import {
225
229
  import {
226
230
  pathColorsLegible,
227
231
  pathLegend
228
- } from "./chunks/chunk-X5L37W4J.js";
232
+ } from "./chunks/chunk-E7FWQQHP.js";
229
233
  import "./chunks/chunk-ES2N6V56.js";
230
234
  import "./chunks/chunk-ST2IBUAN.js";
231
235
  import {
232
236
  formatBp
233
- } from "./chunks/chunk-N62KBLFC.js";
237
+ } from "./chunks/chunk-3ZZSX5HN.js";
234
238
  import {
235
239
  LABEL_CHAR_PX,
236
240
  LABEL_PAD,
@@ -246,8 +250,9 @@ import {
246
250
  resolveColorScheme
247
251
  } from "./chunks/chunk-JKJWSY4V.js";
248
252
  import {
253
+ deletionDrawing,
249
254
  deletionEdges
250
- } from "./chunks/chunk-4EMPBO7S.js";
255
+ } from "./chunks/chunk-N6FECAXP.js";
251
256
  import "./chunks/chunk-2CVHXFK7.js";
252
257
  import {
253
258
  ROW_HEIGHT_PX
@@ -321,6 +326,7 @@ export {
321
326
  REFERENCE_STRIP_ZONE_PX,
322
327
  ROW_HEIGHT_PX,
323
328
  BAR_PX as WALK_BAR_PX,
329
+ CALL_TICK as WALK_CALL_TICK,
324
330
  DISAGREES as WALK_DISAGREES,
325
331
  WALK_FIELDS,
326
332
  GAP_PX as WALK_GAP_PX,
@@ -330,6 +336,7 @@ export {
330
336
  OUTSIDE_CUT as WALK_OUTSIDE_CUT,
331
337
  WALK_SCHEMES,
332
338
  WALK_STRIP_CEILING_PX,
339
+ UNBACKED_TICK as WALK_UNBACKED_TICK,
333
340
  WELL_KNOWN_SAMPLES,
334
341
  alongRow,
335
342
  assemblyWalk,
@@ -340,6 +347,7 @@ export {
340
347
  bubbleSubgraph,
341
348
  bubblesFromGraph,
342
349
  buildGeometry,
350
+ callTickInk,
343
351
  clampZoom,
344
352
  classifyBubble,
345
353
  coalesceRuns,
@@ -348,6 +356,7 @@ export {
348
356
  contains,
349
357
  cutGbzRegion,
350
358
  cutWindowGFA,
359
+ deletionDrawing,
351
360
  deletionEdges,
352
361
  drawReferenceStrip,
353
362
  drawTubeMap,
@@ -421,6 +430,7 @@ export {
421
430
  resolveEncoding,
422
431
  resolveReferenceSample,
423
432
  rowGeneBoxes,
433
+ rowPitch,
424
434
  rowSpan,
425
435
  rulerBoxes,
426
436
  runPaint,
package/dist/labelLayout.js CHANGED
@@ -4,14 +4,14 @@ import {
4
4
  geneCoverageNote,
5
5
  geneLabelCandidates,
6
6
  layoutLabels
7
- } from "./chunks/chunk-DKOB2OPC.js";
8
- import "./chunks/chunk-YMSSF2RK.js";
9
- import "./chunks/chunk-MREQ7GIA.js";
10
- import "./chunks/chunk-Y3IOTZJA.js";
11
- import "./chunks/chunk-N62KBLFC.js";
7
+ } from "./chunks/chunk-GJMC3PGM.js";
8
+ import "./chunks/chunk-FP4H7SFT.js";
9
+ import "./chunks/chunk-MLSWIMZO.js";
10
+ import "./chunks/chunk-WFB5TXRA.js";
11
+ import "./chunks/chunk-3ZZSX5HN.js";
12
12
  import "./chunks/chunk-AB35TJST.js";
13
13
  import "./chunks/chunk-TAMCZHLW.js";
14
- import "./chunks/chunk-4EMPBO7S.js";
14
+ import "./chunks/chunk-N6FECAXP.js";
15
15
  import "./chunks/chunk-2CVHXFK7.js";
16
16
  import "./chunks/chunk-CPMHA4W5.js";
17
17
  import "./chunks/chunk-FYQWPEEY.js";
package/dist/layout/deletionRoutes.js CHANGED
@@ -1,11 +1,9 @@
1
1
  import {
2
- closableDeletions,
3
2
  routeNodes,
4
3
  takeRoutes,
5
4
  withDeletionRoutes
6
- } from "../chunks/chunk-STNG3Y5X.js";
5
+ } from "../chunks/chunk-YZ5CCEDH.js";
7
6
  export {
8
- closableDeletions,
9
7
  routeNodes,
10
8
  takeRoutes,
11
9
  withDeletionRoutes
package/dist/layout/tubeMapLayout.js CHANGED
@@ -5,15 +5,15 @@ import {
5
5
  tubeMapTracks,
6
6
  tubeWidth,
7
7
  visitStrands
8
- } from "../chunks/chunk-R6ZUK4Y3.js";
8
+ } from "../chunks/chunk-4FQTTG5F.js";
9
9
  import "../chunks/chunk-TEDQJPMI.js";
10
10
  import "../chunks/chunk-C44YRP5F.js";
11
- import "../chunks/chunk-X5L37W4J.js";
11
+ import "../chunks/chunk-E7FWQQHP.js";
12
12
  import "../chunks/chunk-ST2IBUAN.js";
13
- import "../chunks/chunk-N62KBLFC.js";
13
+ import "../chunks/chunk-3ZZSX5HN.js";
14
14
  import "../chunks/chunk-AB35TJST.js";
15
15
  import "../chunks/chunk-TAMCZHLW.js";
16
- import "../chunks/chunk-4EMPBO7S.js";
16
+ import "../chunks/chunk-N6FECAXP.js";
17
17
  import "../chunks/chunk-2CVHXFK7.js";
18
18
  import "../chunks/chunk-CPMHA4W5.js";
19
19
  import "../chunks/chunk-BPLIXMH7.js";
package/dist/layout/walkRowDraw.js CHANGED
@@ -1,19 +1,24 @@
1
1
  import {
2
2
  BAR_PX,
3
+ CALL_TICK,
3
4
  DISAGREES,
4
5
  GAP_PX,
5
6
  GENE_INK,
7
+ LABELLED_ROW_PX,
6
8
  OFF_REFERENCE,
7
9
  ON_REFERENCE,
8
10
  OUTSIDE_CUT,
11
+ UNBACKED_TICK,
9
12
  alongRow,
10
13
  boxesGenes,
14
+ callTickInk,
11
15
  coalesceRuns,
12
16
  genesOnRow,
13
17
  kb,
14
18
  placeRowGenes,
15
19
  readoutPlacement,
16
20
  rowGeneBoxes,
21
+ rowPitch,
17
22
  rowSpan,
18
23
  runPaint,
19
24
  unitTicks,
@@ -21,19 +26,19 @@ import {
21
26
  walkRowsKey,
22
27
  walkRowsKeyTree,
23
28
  walkRowsTree
24
- } from "../chunks/chunk-YQZWW2V6.js";
25
- import "../chunks/chunk-GD7FYNGS.js";
26
- import "../chunks/chunk-VUBLSA6P.js";
29
+ } from "../chunks/chunk-UGD6ZMOF.js";
30
+ import "../chunks/chunk-VECR253P.js";
31
+ import "../chunks/chunk-VST5SR4C.js";
27
32
  import "../chunks/chunk-UMNCCYBN.js";
28
33
  import "../chunks/chunk-PBENCR5L.js";
29
- import "../chunks/chunk-Y3IOTZJA.js";
30
- import "../chunks/chunk-X5L37W4J.js";
34
+ import "../chunks/chunk-WFB5TXRA.js";
35
+ import "../chunks/chunk-E7FWQQHP.js";
31
36
  import "../chunks/chunk-ES2N6V56.js";
32
37
  import "../chunks/chunk-ST2IBUAN.js";
33
- import "../chunks/chunk-N62KBLFC.js";
38
+ import "../chunks/chunk-3ZZSX5HN.js";
34
39
  import "../chunks/chunk-AB35TJST.js";
35
40
  import "../chunks/chunk-TAMCZHLW.js";
36
- import "../chunks/chunk-4EMPBO7S.js";
41
+ import "../chunks/chunk-N6FECAXP.js";
37
42
  import "../chunks/chunk-2CVHXFK7.js";
38
43
  import "../chunks/chunk-CPMHA4W5.js";
39
44
  import "../chunks/chunk-NNODIW4U.js";
@@ -41,20 +46,25 @@ import "../chunks/chunk-BPLIXMH7.js";
41
46
  import "../chunks/chunk-FYQWPEEY.js";
42
47
  export {
43
48
  BAR_PX,
49
+ CALL_TICK,
44
50
  DISAGREES,
45
51
  GAP_PX,
46
52
  GENE_INK,
53
+ LABELLED_ROW_PX,
47
54
  OFF_REFERENCE,
48
55
  ON_REFERENCE,
49
56
  OUTSIDE_CUT,
57
+ UNBACKED_TICK,
50
58
  alongRow,
51
59
  boxesGenes,
60
+ callTickInk,
52
61
  coalesceRuns,
53
62
  genesOnRow,
54
63
  kb,
55
64
  placeRowGenes,
56
65
  readoutPlacement,
57
66
  rowGeneBoxes,
67
+ rowPitch,
58
68
  rowSpan,
59
69
  runPaint,
60
70
  unitTicks,
package/dist/layout/walkRowLayout.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  walkRowLayout,
3
3
  walkRowsExtent
4
- } from "../chunks/chunk-EZPBJPK6.js";
4
+ } from "../chunks/chunk-3JANT2SW.js";
5
5
  import "../chunks/chunk-SZNZ2T6D.js";
6
6
  import "../chunks/chunk-ST2IBUAN.js";
7
7
  import "../chunks/chunk-CPMHA4W5.js";
package/dist/layout/walkStrip.js CHANGED
@@ -1,5 +1,4 @@
1
1
  import {
2
- LABELLED_ROW_PX,
3
2
  WALK_STRIP_CEILING_PX,
4
3
  segmentAt,
5
4
  stripGeneGaps,
@@ -8,20 +7,22 @@ import {
8
7
  walkMarksTree,
9
8
  walkStripFrame,
10
9
  walkStripLabelsTree
11
- } from "../chunks/chunk-7R2UGY4I.js";
12
- import "../chunks/chunk-YQZWW2V6.js";
13
- import "../chunks/chunk-GD7FYNGS.js";
14
- import "../chunks/chunk-VUBLSA6P.js";
10
+ } from "../chunks/chunk-KREASK3Z.js";
11
+ import {
12
+ LABELLED_ROW_PX
13
+ } from "../chunks/chunk-UGD6ZMOF.js";
14
+ import "../chunks/chunk-VECR253P.js";
15
+ import "../chunks/chunk-VST5SR4C.js";
15
16
  import "../chunks/chunk-UMNCCYBN.js";
16
17
  import "../chunks/chunk-PBENCR5L.js";
17
- import "../chunks/chunk-Y3IOTZJA.js";
18
- import "../chunks/chunk-X5L37W4J.js";
18
+ import "../chunks/chunk-WFB5TXRA.js";
19
+ import "../chunks/chunk-E7FWQQHP.js";
19
20
  import "../chunks/chunk-ES2N6V56.js";
20
21
  import "../chunks/chunk-ST2IBUAN.js";
21
- import "../chunks/chunk-N62KBLFC.js";
22
+ import "../chunks/chunk-3ZZSX5HN.js";
22
23
  import "../chunks/chunk-AB35TJST.js";
23
24
  import "../chunks/chunk-TAMCZHLW.js";
24
- import "../chunks/chunk-4EMPBO7S.js";
25
+ import "../chunks/chunk-N6FECAXP.js";
25
26
  import "../chunks/chunk-2CVHXFK7.js";
26
27
  import "../chunks/chunk-CPMHA4W5.js";
27
28
  import "../chunks/chunk-NNODIW4U.js";
package/dist/layoutModes.js CHANGED
@@ -4,8 +4,8 @@ import {
4
4
  LAYOUT_MODE_VALUES,
5
5
  layoutModeByValue,
6
6
  modeUsesLayoutEngine
7
- } from "./chunks/chunk-T43W7NKK.js";
8
- import "./chunks/chunk-R6ZUK4Y3.js";
7
+ } from "./chunks/chunk-JKXE6CIP.js";
8
+ import "./chunks/chunk-4FQTTG5F.js";
9
9
  import "./chunks/chunk-TEDQJPMI.js";
10
10
  import "./chunks/chunk-LOEA5IHZ.js";
11
11
  import "./chunks/chunk-L3O7AWLI.js";
@@ -13,15 +13,15 @@ import "./chunks/chunk-TZFWUT2C.js";
13
13
  import "./chunks/chunk-RVS2QCOX.js";
14
14
  import "./chunks/chunk-HNQPEMYE.js";
15
15
  import "./chunks/chunk-C44YRP5F.js";
16
- import "./chunks/chunk-EZPBJPK6.js";
16
+ import "./chunks/chunk-3JANT2SW.js";
17
17
  import "./chunks/chunk-SZNZ2T6D.js";
18
- import "./chunks/chunk-X5L37W4J.js";
18
+ import "./chunks/chunk-E7FWQQHP.js";
19
19
  import "./chunks/chunk-ES2N6V56.js";
20
20
  import "./chunks/chunk-ST2IBUAN.js";
21
- import "./chunks/chunk-N62KBLFC.js";
21
+ import "./chunks/chunk-3ZZSX5HN.js";
22
22
  import "./chunks/chunk-AB35TJST.js";
23
23
  import "./chunks/chunk-TAMCZHLW.js";
24
- import "./chunks/chunk-4EMPBO7S.js";
24
+ import "./chunks/chunk-N6FECAXP.js";
25
25
  import "./chunks/chunk-2CVHXFK7.js";
26
26
  import "./chunks/chunk-CPMHA4W5.js";
27
27
  import "./chunks/chunk-BPLIXMH7.js";
package/dist/pathColors.js CHANGED
@@ -8,12 +8,12 @@ import {
8
8
  pathGreyCssColor,
9
9
  pathHueAt,
10
10
  pathLegend
11
- } from "./chunks/chunk-X5L37W4J.js";
11
+ } from "./chunks/chunk-E7FWQQHP.js";
12
12
  import "./chunks/chunk-ST2IBUAN.js";
13
- import "./chunks/chunk-N62KBLFC.js";
13
+ import "./chunks/chunk-3ZZSX5HN.js";
14
14
  import "./chunks/chunk-AB35TJST.js";
15
15
  import "./chunks/chunk-TAMCZHLW.js";
16
- import "./chunks/chunk-4EMPBO7S.js";
16
+ import "./chunks/chunk-N6FECAXP.js";
17
17
  import "./chunks/chunk-2CVHXFK7.js";
18
18
  import "./chunks/chunk-CPMHA4W5.js";
19
19
  import "./chunks/chunk-BPLIXMH7.js";