@jbrowse/bandage-core 6.2.0 → 7.1.0

package/dist/chunks/{chunk-GOY6REMT.js → chunk-2LQ5BWT7.js}

@@ -1,7 +1,7 @@
 import {
   formatBp,
   groupDigits
-} from "./chunk-N62KBLFC.js";
+} from "./chunk-3ZZSX5HN.js";
 
 // src/walkKey.ts
 function rangeText(contig, start, end) {

package/dist/chunks/{chunk-5HF753RL.js → chunk-2WA4EY25.js}

@@ -5,12 +5,12 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-7R2UGY4I.js";
+} from "./chunk-KREASK3Z.js";
 import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunk-YQZWW2V6.js";
+} from "./chunk-UGD6ZMOF.js";
 import {
   Canvas2DRenderer
 } from "./chunk-CH3DLBUT.js";
@@ -24,45 +24,45 @@ import {
 } from "./chunk-BUBZ32IC.js";
 import {
   version
-} from "./chunk-HE3NRWH7.js";
+} from "./chunk-MAPRJ2H2.js";
 import {
   axisScaleOf
-} from "./chunk-M6SAUIYR.js";
+} from "./chunk-AWCMVPVP.js";
 import {
   facetLifts,
   walkLift
-} from "./chunk-A7VOULBP.js";
+} from "./chunk-MH5IA57M.js";
 import {
   encodingStops
-} from "./chunk-6CO564AN.js";
+} from "./chunk-TQ7VCGJR.js";
 import {
   rangeText,
   walkKey
-} from "./chunk-GOY6REMT.js";
+} from "./chunk-2LQ5BWT7.js";
 import {
   FIT_PADDING,
   drawingBounds,
   fitTransform
-} from "./chunk-YFRTTBCZ.js";
+} from "./chunk-6UFS3EWI.js";
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 import {
   nodeInk
 } from "./chunk-PBENCR5L.js";
 import {
   geneLabelCandidates
-} from "./chunk-DKOB2OPC.js";
+} from "./chunk-GJMC3PGM.js";
 import {
   nodesUnderBox
-} from "./chunk-YMSSF2RK.js";
+} from "./chunk-FP4H7SFT.js";
 import {
   walkRowsExtent
-} from "./chunk-EZPBJPK6.js";
+} from "./chunk-3JANT2SW.js";
 import {
   pathLegend
-} from "./chunk-X5L37W4J.js";
+} from "./chunk-E7FWQQHP.js";
 import {
   LABEL_CHAR_PX,
   LABEL_PAD,
@@ -74,8 +74,9 @@ import {
   resolveColorScheme
 } from "./chunk-JKJWSY4V.js";
 import {
+  deletionDrawing,
   deletionEdges
-} from "./chunk-4EMPBO7S.js";
+} from "./chunk-N6FECAXP.js";
 import {
   ROW_HEIGHT_PX
 } from "./chunk-CPMHA4W5.js";
@@ -153,7 +154,7 @@ function figureSvg(graph, layout, o = {}) {
   const rows = o.walkRows;
   const bounds = drawingBounds(layout, {
     region: o.fitToDrawing ? void 0 : region,
-    extent: rows && layout.extent ? walkRowsExtent(rows) : void 0
+    extent: rows && layout.extent ? walkRowsExtent(rows, o.walkRowPitch) : void 0
   });
   const pixelRows = layout.pixelRows ?? false;
   const nodeById = new Map(graph.nodes.map((node) => [node.id, node]));
@@ -163,7 +164,11 @@ function figureSvg(graph, layout, o = {}) {
     start: referenceRamp.start,
     end: referenceRamp.start + referenceRamp.span
   };
-  const deletions = layout.tubeMap ? [] : deletionEdges(graph);
+  const drawnDeletions = deletionDrawing(
+    graph,
+    layout.tubeMap ? [] : deletionEdges(graph),
+    o.showDeletionEdges
+  );
   const layers = o.walks ?? [];
   const walkRamp = layers.some((l) => l.color?.field === "reference") ? referenceRamp ?? computeReferenceRamp(graph, rampDomain) : void 0;
   const lift = layers.length > 0 && !layout.tubeMap ? walkLift(graph, layers, walkRamp) : void 0;
@@ -221,7 +226,7 @@ function figureSvg(graph, layout, o = {}) {
         serializeEl(
           walkRowsTree(
             rows,
-            { ...t, width: w, height: h },
+            { ...t, width: w, height: h, ...o.walkRowPitch },
             {
               ramp: rampInterval,
               rowGenes: o.rowGenes
@@ -230,9 +235,10 @@ function figureSvg(graph, layout, o = {}) {
         )
       );
     }
-    const rowLabels = rows ? [rows.reference, ...rows.rows].map((r, i) => ({
+    const pitch = o.walkRowPitch;
+    const rowLabels = rows ? pitch && !pitch.labelled ? [] : [rows.reference, ...rows.rows].map((r, i) => ({
       label: r.label,
-      y: i * ROW_HEIGHT_PX
+      y: i * (pitch?.rowPx ?? ROW_HEIGHT_PX)
     })) : layout.rowLabels ?? [];
     for (const { label, y } of rowLabels) {
       const sy = y * t.scaleY + t.translateY;
@@ -276,12 +282,10 @@ function figureSvg(graph, layout, o = {}) {
         highlight,
         axis,
         referenceRamp,
-        deletions: new Map(deletions.map((d) => [d.edgeIndex, d.bypassed])),
+        deletions: drawnDeletions.bypassed,
         deletionRoutes: layout.deletionRoutes,
         stranded: layout.stranded,
-        hiddenEdges: new Set(
-          o.showDeletionEdges ? [] : deletions.map((d) => d.edgeIndex)
-        )
+        hiddenEdges: drawnDeletions.hidden
       })
     );
     const t = {

package/dist/chunks/{chunk-EZPBJPK6.js → chunk-3JANT2SW.js}

@@ -12,14 +12,17 @@ import {
 
 // src/layout/walkRowLayout.ts
 var READOUT_ROOM = 1.3;
-function walkRowsExtent(walks) {
+function walkRowsExtent(walks, pitch = {
+  rowPx: ROW_HEIGHT_PX,
+  readouts: true
+}) {
   let longest = walks.reference.bp;
   for (const row of walks.rows) {
     longest = Math.max(longest, row.bp);
   }
   return {
-    maxX: walks.origin + longest * READOUT_ROOM,
-    maxY: walks.rows.length * ROW_HEIGHT_PX
+    maxX: walks.origin + longest * (pitch.readouts ? READOUT_ROOM : 1),
+    maxY: walks.rows.length * pitch.rowPx
   };
 }
 function walkRowLayout(graph, region) {

package/dist/chunks/{chunk-N62KBLFC.js → chunk-3ZZSX5HN.js}

@@ -6,7 +6,7 @@ import {
 } from "./chunk-TAMCZHLW.js";
 import {
   deletionArcCurves
-} from "./chunk-4EMPBO7S.js";
+} from "./chunk-N6FECAXP.js";
 import {
   curveBounds,
   curveMidpoint

package/dist/chunks/{chunk-R6ZUK4Y3.js → chunk-4FQTTG5F.js}

@@ -7,7 +7,7 @@ import {
 import {
   pathCssColor,
   pathGreyCssColor
-} from "./chunk-X5L37W4J.js";
+} from "./chunk-E7FWQQHP.js";
 import {
   pathOrigin
 } from "./chunk-ST2IBUAN.js";

package/dist/chunks/{chunk-YFRTTBCZ.js → chunk-6UFS3EWI.js}

@@ -11,11 +11,10 @@ import {
   parseGFA
 } from "./chunk-CDLPYR5O.js";
 import {
-  closableDeletions,
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "./chunk-STNG3Y5X.js";
+} from "./chunk-YZ5CCEDH.js";
 import {
   anchorGraph
 } from "./chunk-ST2IBUAN.js";
@@ -32,8 +31,9 @@ import {
   layoutScaling
 } from "./chunk-6JEWNXCQ.js";
 import {
+  closableDeletions,
   deletionEdges
-} from "./chunk-4EMPBO7S.js";
+} from "./chunk-N6FECAXP.js";
 import {
   isBackbone
 } from "./chunk-FYQWPEEY.js";

package/dist/chunks/{chunk-M6SAUIYR.js → chunk-AWCMVPVP.js}

@@ -1,6 +1,6 @@
 import {
   clampZoom
-} from "./chunk-YFRTTBCZ.js";
+} from "./chunk-6UFS3EWI.js";
 
 // src/viewport.ts
 function axisScaleOf(scale, pixelRows) {

package/dist/chunks/{chunk-P2KU2TXS.js → chunk-CNQSHEBS.js}

@@ -1,7 +1,7 @@
 import {
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 import {
   abgrToCssRgba
 } from "./chunk-UMNCCYBN.js";

package/dist/chunks/{chunk-CS3E4ETM.js → chunk-DRA7733Q.js}

@@ -1,6 +1,6 @@
 import {
   formatBp
-} from "./chunk-N62KBLFC.js";
+} from "./chunk-3ZZSX5HN.js";
 import {
   isBackbone
 } from "./chunk-FYQWPEEY.js";

package/dist/chunks/{chunk-X5L37W4J.js → chunk-E7FWQQHP.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-ST2IBUAN.js";
 import {
   groupDigits
-} from "./chunk-N62KBLFC.js";
+} from "./chunk-3ZZSX5HN.js";
 import {
   isGenericSample
 } from "./chunk-BPLIXMH7.js";

package/dist/chunks/{chunk-3GMVZMKD.js → chunk-EXSXBIMH.js}

@@ -2,7 +2,7 @@ import {
   LIFT_BACKDROP_CSS,
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 import {
   abgrToCssRgba
 } from "./chunk-UMNCCYBN.js";

package/dist/chunks/{chunk-YMSSF2RK.js → chunk-FP4H7SFT.js}

@@ -1,7 +1,7 @@
 import {
   EdgeSpatialIndex,
   SpatialIndex
-} from "./chunk-MREQ7GIA.js";
+} from "./chunk-MLSWIMZO.js";
 import {
   pathRibbonOffsets,
   translateCurves,

package/dist/chunks/{chunk-DKOB2OPC.js → chunk-GJMC3PGM.js}

@@ -1,12 +1,12 @@
 import {
   nodesUnderBox
-} from "./chunk-YMSSF2RK.js";
+} from "./chunk-FP4H7SFT.js";
 import {
   nodeLabelBudget,
   placeSizeLabels,
   rowLabelBox,
   sizeLabelCandidates
-} from "./chunk-N62KBLFC.js";
+} from "./chunk-3ZZSX5HN.js";
 import {
   LABEL_CHAR_PX,
   LABEL_PAD,
@@ -127,7 +127,7 @@ function layoutLabels(m) {
   const sizeCandidates = m.nodePositions && m.labelsNodeSizes ? sizeLabelCandidates({
     nodePositions: m.nodePositions,
     nodeLengths: m.nodeLengths,
-    deletions: m.showDeletionEdges ? m.deletions : [],
+    deletions: m.deletions,
     deletionRoutes: m.deletionRoutes,
     stranded: m.stranded,
     alleleDeletions: m.alleleDeletions,

package/dist/chunks/{chunk-T43W7NKK.js → chunk-JKXE6CIP.js}

@@ -2,7 +2,7 @@ import {
   hasTubeMapPaths,
   tubeMapLayout,
   tubeMapReferenceLayout
-} from "./chunk-R6ZUK4Y3.js";
+} from "./chunk-4FQTTG5F.js";
 import {
   sampleRowLayout
 } from "./chunk-LOEA5IHZ.js";
@@ -14,7 +14,7 @@ import {
 } from "./chunk-HNQPEMYE.js";
 import {
   walkRowLayout
-} from "./chunk-EZPBJPK6.js";
+} from "./chunk-3JANT2SW.js";
 import {
   isBackbone,
   isOffReference

package/dist/chunks/{chunk-7R2UGY4I.js → chunk-KREASK3Z.js}

@@ -1,16 +1,14 @@
 import {
   alongRow,
-  boxesGenes
-} from "./chunk-YQZWW2V6.js";
+  boxesGenes,
+  rowPitch
+} from "./chunk-UGD6ZMOF.js";
 import {
   pathOrigin
 } from "./chunk-ST2IBUAN.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";
-import {
-  ROW_HEIGHT_PX
-} from "./chunk-CPMHA4W5.js";
 import {
   el
 } from "./chunk-NNODIW4U.js";
@@ -20,7 +18,6 @@ var PAD_PX = 6;
 var WALK_STRIP_CEILING_PX = 260;
 var LABEL_FONT_PX = 11;
 var MIN_ROW_PX = 3;
-var LABELLED_ROW_PX = 12;
 var READOUT_ROOM = 1.3;
 var MARK_INK = "#111";
 var TICK_PX = 3;
@@ -113,13 +110,11 @@ function walkStripFrame(bars, o) {
   const maxHeight = o.maxHeight ?? WALK_STRIP_CEILING_PX;
   const labelPx = o.labelPx ?? Math.max(...[bars.reference, ...bars.rows].map((r) => r.label.length)) * LABEL_CHAR_PX + 16;
   const count = bars.rows.length + 1;
-  const rowPx = Math.max(
-    MIN_ROW_PX,
-    Math.min(ROW_HEIGHT_PX, Math.floor((maxHeight - 2 * PAD_PX) / count))
+  const { rowPx, barPx, labelled, readouts } = rowPitch(
+    count,
+    maxHeight - 2 * PAD_PX,
+    MIN_ROW_PX
   );
-  const labelled = rowPx >= LABELLED_ROW_PX;
-  const readouts = rowPx >= 14;
-  const barPx = Math.max(2, Math.round(rowPx * 0.6));
   const longest = Math.max(bars.reference.bp, ...bars.rows.map((r) => r.bp), 1);
   const left = labelled ? labelPx : PAD_PX;
   const usable = Math.max(1, o.width - left - PAD_PX);
@@ -194,7 +189,6 @@ function stripGeneGaps(frame, rowGenes, gaps) {
 
 export {
   WALK_STRIP_CEILING_PX,
-  LABELLED_ROW_PX,
   stripMarks,
   segmentAt,
   walkStripFrame,

package/dist/chunks/{chunk-HE3NRWH7.js → chunk-MAPRJ2H2.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "6.2.0";
+var version = "7.1.0";
 
 export {
   version

package/dist/chunks/{chunk-A7VOULBP.js → chunk-MH5IA57M.js}

@@ -1,7 +1,7 @@
 import {
   encodedColor,
   resolveEncoding
-} from "./chunk-6CO564AN.js";
+} from "./chunk-TQ7VCGJR.js";
 import {
   pathOrigin
 } from "./chunk-ST2IBUAN.js";

package/dist/chunks/{chunk-MREQ7GIA.js → chunk-MLSWIMZO.js}

@@ -1,6 +1,6 @@
 import {
   baseEdgeCurves
-} from "./chunk-Y3IOTZJA.js";
+} from "./chunk-WFB5TXRA.js";
 import {
   curveBounds,
   pathRibbonOffsets

package/dist/chunks/{chunk-4EMPBO7S.js → chunk-N6FECAXP.js}

@@ -109,9 +109,59 @@ function deletionEdges(graph) {
   }
   return found;
 }
+function closableDeletions(graph, deletions) {
+  const parent = /* @__PURE__ */ new Map();
+  const root = (id) => {
+    let r = id;
+    while (parent.has(r)) {
+      r = parent.get(r);
+    }
+    if (r !== id) {
+      parent.set(id, r);
+    }
+    return r;
+  };
+  const join = (a, b) => {
+    const [ra, rb] = [root(a), root(b)];
+    if (ra !== rb) {
+      parent.set(ra, rb);
+    }
+    return ra !== rb;
+  };
+  const candidates = new Set(deletions.map((d) => d.edgeIndex));
+  graph.edges.forEach((e, ei) => {
+    if (!candidates.has(ei)) {
+      join(e.from, e.to);
+    }
+  });
+  return new Set(
+    deletions.filter((d) => !join(d.from, d.to)).map((d) => d.edgeIndex)
+  );
+}
+var drawings = /* @__PURE__ */ new WeakMap();
+function deletionDrawing(graph, deletions, show = true) {
+  let byShow = drawings.get(deletions);
+  if (!byShow) {
+    byShow = /* @__PURE__ */ new Map();
+    drawings.set(deletions, byShow);
+  }
+  let drawing = byShow.get(show);
+  if (!drawing) {
+    const hidden = show ? /* @__PURE__ */ new Set() : closableDeletions(graph, deletions);
+    drawing = {
+      shown: deletions.filter((d) => !hidden.has(d.edgeIndex)),
+      bypassed: new Map(deletions.map((d) => [d.edgeIndex, d.bypassed])),
+      hidden
+    };
+    byShow.set(show, drawing);
+  }
+  return drawing;
+}
 
 export {
   bypassedPoints,
   deletionArcCurves,
-  deletionEdges
+  deletionEdges,
+  closableDeletions,
+  deletionDrawing
 };

package/dist/chunks/{chunk-CTSBC2O6.js → chunk-OWFPAIJI.js}

@@ -1,6 +1,6 @@
 import {
   tubeSpan
-} from "./chunk-CS3E4ETM.js";
+} from "./chunk-DRA7733Q.js";
 
 // src/tubeMap/genes.ts
 function tubeMapGenes(byRefName, genes) {

package/dist/chunks/{chunk-6CO564AN.js → chunk-TQ7VCGJR.js}

@@ -2,7 +2,7 @@ import {
   REFERENCE_RAMP_ALT_COLOR,
   REFERENCE_RAMP_MAX_HUE,
   hslToRgb
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 import {
   packAbgr
 } from "./chunk-UMNCCYBN.js";

package/dist/chunks/{chunk-YQZWW2V6.js → chunk-UGD6ZMOF.js}

@@ -3,10 +3,10 @@ import {
   RAMP_GRADIENT_STOPS,
   rampHueCss,
   rampStops
-} from "./chunk-GD7FYNGS.js";
+} from "./chunk-VECR253P.js";
 import {
   REFERENCE_RAMP_ALT_CSS
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";
@@ -24,6 +24,9 @@ var OUTSIDE_CUT = "#bdbdbd";
 var GENE_INK = "#1c1c22";
 var BAR_PX = 12;
 var GAP_PX = 4;
+var LABELLED_ROW_PX = 12;
+var READOUT_ROW_PX = 14;
+var MIN_TILED_BAR_PX = 6;
 var MIN_TILE_PX = 3;
 function kb(bp) {
   return `${(bp / 1e3).toFixed(bp < 1e4 ? 1 : 0)} kb`;
@@ -209,6 +212,9 @@ function walkRowsKey(bars, o = {}) {
 var CALL_TICK = "#111";
 var UNBACKED_TICK = "#9e9e9e";
 var DISAGREES = "#c62828";
+function callTickInk(call) {
+  return call.agrees === false ? DISAGREES : call.spanningReads === 0 ? UNBACKED_TICK : CALL_TICK;
+}
 function walkRowsKeyTree(entries, x, y, idPrefix = "walk-key") {
   let at = 0;
   const parts = entries.flatMap((e, i) => {
@@ -262,6 +268,19 @@ function walkRowsKeyTree(entries, x, y, idPrefix = "walk-key") {
     )
   };
 }
+function rowPitch(count, room, minRowPx = 0) {
+  const fit = room / Math.max(1, count);
+  const rowPx = Math.max(
+    minRowPx,
+    Math.min(ROW_HEIGHT_PX, fit >= 1 ? Math.floor(fit) : fit)
+  );
+  return {
+    rowPx,
+    barPx: rowPx <= 3 ? rowPx : Math.max(3, Math.round(rowPx * 0.6)),
+    labelled: rowPx >= LABELLED_ROW_PX,
+    readouts: rowPx >= READOUT_ROW_PX
+  };
+}
 function coalesceRuns(runs, pxPerBp) {
   const minBp = 1 / pxPerBp;
   const out = [];
@@ -358,6 +377,7 @@ function walkRowsTree(bars, frame, o = {}) {
   const X = (bp) => bp * frame.scaleX + frame.translateX;
   const rowPx = frame.rowPx ?? ROW_HEIGHT_PX;
   const barPx = frame.barPx ?? BAR_PX;
+  const overhang = Math.min(3, Math.max(0, (rowPx - barPx) / 2));
   const Y = (row) => row * rowPx * frame.scaleY + frame.translateY;
   const { origin, unit, reference, rows } = bars;
   const along = (offset) => X(origin + offset);
@@ -392,7 +412,7 @@ function walkRowsTree(bars, frame, o = {}) {
         rect
       ] : [rect];
     });
-    const ticks = unit ? unitTicks(row.bp, unit, frame.scaleX).map(
+    const ticks = unit && barPx >= MIN_TILED_BAR_PX ? unitTicks(row.bp, unit, frame.scaleX).map(
       (k) => el("line", {
         x1: along(k),
         x2: along(k),
@@ -425,10 +445,10 @@ function walkRowsTree(bars, frame, o = {}) {
       call && el("rect", {
         "data-testid": "graph-walk-call",
         x: along(call.bp) - 1,
-        y: y - barPx / 2 - 3,
+        y: y - barPx / 2 - overhang,
         width: 2,
-        height: barPx + 6,
-        fill: call.spanningReads === 0 ? UNBACKED_TICK : CALL_TICK
+        height: barPx + 2 * overhang,
+        fill: callTickInk(call)
       }),
       readouts && el(
         "text",
@@ -457,6 +477,7 @@ export {
   GENE_INK,
   BAR_PX,
   GAP_PX,
+  LABELLED_ROW_PX,
   kb,
   walkRowReadout,
   readoutPlacement,
@@ -469,8 +490,12 @@ export {
   boxesGenes,
   rowGeneBoxes,
   walkRowsKey,
+  CALL_TICK,
+  UNBACKED_TICK,
   DISAGREES,
+  callTickInk,
   walkRowsKeyTree,
+  rowPitch,
   coalesceRuns,
   walkRowsTree
 };

package/dist/chunks/{chunk-GD7FYNGS.js → chunk-VECR253P.js}

@@ -1,6 +1,6 @@
 import {
   REFERENCE_RAMP_MAX_HUE
-} from "./chunk-VUBLSA6P.js";
+} from "./chunk-VST5SR4C.js";
 
 // src/referenceRampCss.ts
 function rampHueCss(hue) {

package/dist/chunks/{chunk-VUBLSA6P.js → chunk-VST5SR4C.js}

@@ -9,13 +9,13 @@ import {
 } from "./chunk-PBENCR5L.js";
 import {
   baseEdgeCurves
-} from "./chunk-Y3IOTZJA.js";
+} from "./chunk-WFB5TXRA.js";
 import {
   PATH_LIGHTNESS,
   PATH_SATURATION,
   nameHue,
   pathHueAt
-} from "./chunk-X5L37W4J.js";
+} from "./chunk-E7FWQQHP.js";
 import {
   referenceMidpoints
 } from "./chunk-ES2N6V56.js";

package/dist/chunks/{chunk-Y3IOTZJA.js → chunk-WFB5TXRA.js}

@@ -1,6 +1,6 @@
 import {
   bypassedPoints
-} from "./chunk-4EMPBO7S.js";
+} from "./chunk-N6FECAXP.js";
 import {
   computeEdgeCurves,
   edgeJoinOf,

package/dist/chunks/{chunk-STNG3Y5X.js → chunk-YZ5CCEDH.js}

@@ -39,35 +39,6 @@ function withDeletionRoutes(graph, deletions, dropped = /* @__PURE__ */ new Set(
     ids: new Set(routes.values())
   };
 }
-function closableDeletions(graph, deletions) {
-  const parent = /* @__PURE__ */ new Map();
-  const root = (id) => {
-    let r = id;
-    while (parent.has(r)) {
-      r = parent.get(r);
-    }
-    if (r !== id) {
-      parent.set(id, r);
-    }
-    return r;
-  };
-  const join = (a, b) => {
-    const [ra, rb] = [root(a), root(b)];
-    if (ra !== rb) {
-      parent.set(ra, rb);
-    }
-    return ra !== rb;
-  };
-  const candidates = new Set(deletions.map((d) => d.edgeIndex));
-  graph.edges.forEach((e, ei) => {
-    if (!candidates.has(ei)) {
-      join(e.from, e.to);
-    }
-  });
-  return new Set(
-    deletions.filter((d) => !join(d.from, d.to)).map((d) => d.edgeIndex)
-  );
-}
 function routeNodes(graph, deletions, routes, drawnOf, opts) {
   const lengths = new Map(graph.nodes.map((n) => [n.id, n.length]));
   return deletions.map((d) => {
@@ -103,7 +74,6 @@ function takeRoutes(positions, routes) {
 
 export {
   withDeletionRoutes,
-  closableDeletions,
   routeNodes,
   takeRoutes
 };