@jbrowse/bandage-core 6.1.0 → 6.2.0

package/dist/types/index.d.ts

@@ -8,6 +8,9 @@ export { NODE_WIDTHS, maxNodeWidthPx, meanDepth, nodeInk, nodeWidthPx, } from '.
 export type { NodeWidth } from './nodeWidths.js';
 export { BUBBLE_SPREADS } from './bubbleSpreads.js';
 export type { BubbleSpread } from './bubbleSpreads.js';
+export { LAYOUT_ENGINES, stressLayout } from './layout/stressEngine.js';
+export type { LayoutEngineKind } from './layout/stressEngine.js';
+export { layoutEngine } from './layoutEngines.js';
 export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder.js';
 export { Canvas2DRenderer } from './renderer/Canvas2DRenderer.js';
 export { getDpr } from './renderer/canvas.js';

package/dist/types/layout/stressEngine.d.ts

@@ -0,0 +1,19 @@
+import type { EngineRequest } from '../pipeline.js';
+import type { LayoutResult } from '../types.js';
+export declare const LAYOUT_ENGINES: readonly [{
+    readonly value: "fmmm";
+    readonly label: "Bandage (FMMM)";
+    readonly description: "Bandage's force-directed layout: OGDF's fast multipole multilevel method, compiled to wasm.";
+}, {
+    readonly value: "stress";
+    readonly label: "Stress (experimental)";
+    readonly description: "Stress layout by stochastic gradient descent in plain JS: distances along the graph become distances on the page, so the reference reads straight and a repeat loop reads as a ring.";
+}];
+export type LayoutEngineKind = (typeof LAYOUT_ENGINES)[number]['value'];
+export declare const LAYOUT_ENGINE_VALUES: ("fmmm" | "stress")[];
+export interface StressOptions {
+    quality?: number;
+    seed?: number;
+    componentSeparation?: number;
+}
+export declare function stressLayout(request: EngineRequest, opts?: StressOptions): LayoutResult;

package/dist/types/layoutEngines.d.ts

@@ -0,0 +1,2 @@
+import type { LayoutEngine } from './pipeline.js';
+export declare const layoutEngine: LayoutEngine;

package/dist/types/pipeline.d.ts

@@ -1,6 +1,7 @@
 import type { BubbleSpread } from './bubbleSpreads.js';
 import type { LayoutScaling } from './layout/drawnScale.js';
 import type { LayoutNode } from './layout/referenceSeeds.js';
+import type { LayoutEngineKind } from './layout/stressEngine.js';
 import type { Graph, LayoutResult, NodeSegment } from './types.js';
 export interface Bounds {
     minX: number;
@@ -30,6 +31,7 @@ export interface EngineSettings {
     spacing?: number;
     componentSeparation?: number;
     showDeletionEdges?: boolean;
+    engine?: LayoutEngineKind;
 }
 export declare function engineRequest(graph: Graph, scaling: LayoutScaling, settings: EngineSettings): EngineRequest;
 export declare function engineKey(graph: Graph, settings: EngineSettings): string;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "6.1.0";
+export declare const version = "6.2.0";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-LPFN4POU.js";
+} from "./chunks/chunk-HE3NRWH7.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,16 +5,16 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-AMHZMY6E.js";
-import "./chunks/chunk-6UACM7VU.js";
+} from "./chunks/chunk-M6SAUIYR.js";
+import "./chunks/chunk-YFRTTBCZ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-C6USNTTP.js";
-import "./chunks/chunk-ST2IBUAN.js";
+import "./chunks/chunk-STNG3Y5X.js";
 import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-TAMCZHLW.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";

package/dist/walkEncoding.js

@@ -9,17 +9,17 @@ import {
   schemeColor,
   schemeCss,
   schemeRgb
-} from "./chunks/chunk-X4VVPLI5.js";
-import "./chunks/chunk-RX5CSWJW.js";
+} from "./chunks/chunk-6CO564AN.js";
+import "./chunks/chunk-VUBLSA6P.js";
 import "./chunks/chunk-UMNCCYBN.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-Y3IOTZJA.js";
 import "./chunks/chunk-X5L37W4J.js";
-import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-N62KBLFC.js";
 import "./chunks/chunk-AB35TJST.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-4EMPBO7S.js";
 import "./chunks/chunk-2CVHXFK7.js";
 import "./chunks/chunk-CPMHA4W5.js";

package/dist/walkHighlight.js

@@ -2,18 +2,18 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-ZKGM7VLA.js";
-import "./chunks/chunk-X4VVPLI5.js";
-import "./chunks/chunk-RX5CSWJW.js";
+} from "./chunks/chunk-A7VOULBP.js";
+import "./chunks/chunk-6CO564AN.js";
+import "./chunks/chunk-VUBLSA6P.js";
 import "./chunks/chunk-UMNCCYBN.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-Y3IOTZJA.js";
 import "./chunks/chunk-X5L37W4J.js";
-import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-N62KBLFC.js";
 import "./chunks/chunk-AB35TJST.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-4EMPBO7S.js";
 import "./chunks/chunk-2CVHXFK7.js";
 import "./chunks/chunk-CPMHA4W5.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "6.1.0",
+  "version": "6.2.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {

package/dist/chunks/{chunk-RX5CSWJW.js → chunk-VUBLSA6P.js}

@@ -3,6 +3,10 @@ import {
   fadeAbgr,
   packAbgr
 } from "./chunk-UMNCCYBN.js";
+import {
+  meanDepth,
+  nodeWidthPx
+} from "./chunk-PBENCR5L.js";
 import {
   baseEdgeCurves
 } from "./chunk-Y3IOTZJA.js";
@@ -15,10 +19,6 @@ import {
 import {
   referenceMidpoints
 } from "./chunk-ES2N6V56.js";
-import {
-  meanDepth,
-  nodeWidthPx
-} from "./chunk-PBENCR5L.js";
 import {
   dashCurves,
   pathRibbonOffsets,