@jbrowse/bandage-core 6.1.0 → 6.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (40) hide show
  1. package/dist/chunks/{chunk-SMQ545MU.js → chunk-3GMVZMKD.js} +1 -1
  2. package/dist/chunks/{chunk-KKU6JRJC.js → chunk-5HF753RL.js} +14 -14
  3. package/dist/chunks/{chunk-X4VVPLI5.js → chunk-6CO564AN.js} +1 -1
  4. package/dist/chunks/{chunk-V5BPIOLS.js → chunk-7R2UGY4I.js} +1 -1
  5. package/dist/chunks/{chunk-ZKGM7VLA.js → chunk-A7VOULBP.js} +1 -1
  6. package/dist/chunks/{chunk-ZHCDYSA5.js → chunk-GD7FYNGS.js} +1 -1
  7. package/dist/chunks/{chunk-LPFN4POU.js → chunk-HE3NRWH7.js} +1 -1
  8. package/dist/chunks/chunk-L53SXJZI.js +22 -0
  9. package/dist/chunks/{chunk-AMHZMY6E.js → chunk-M6SAUIYR.js} +1 -1
  10. package/dist/chunks/chunk-O4TGF4WS.js +503 -0
  11. package/dist/chunks/{chunk-ZZA2AFB4.js → chunk-P2KU2TXS.js} +1 -1
  12. package/dist/chunks/{chunk-C6USNTTP.js → chunk-STNG3Y5X.js} +25 -4
  13. package/dist/chunks/{chunk-6UACM7VU.js → chunk-YFRTTBCZ.js} +4 -3
  14. package/dist/chunks/{chunk-PJESIRDU.js → chunk-YQZWW2V6.js} +2 -2
  15. package/dist/cli/figure.js +22 -25
  16. package/dist/figure.js +14 -14
  17. package/dist/index.js +45 -35
  18. package/dist/layout/deletionRoutes.js +1 -1
  19. package/dist/layout/stressEngine.js +11 -0
  20. package/dist/layout/walkRowDraw.js +5 -5
  21. package/dist/layout/walkStrip.js +6 -6
  22. package/dist/layoutEngines.js +9 -0
  23. package/dist/layoutModes.js +2 -2
  24. package/dist/pipeline.js +3 -3
  25. package/dist/referenceRampCss.js +4 -4
  26. package/dist/referenceStrip.js +4 -4
  27. package/dist/renderer/GeometryBuilder.js +3 -3
  28. package/dist/tubeMap/nodeColors.js +4 -4
  29. package/dist/types/cli/figure.d.ts +2 -0
  30. package/dist/types/index.d.ts +3 -0
  31. package/dist/types/layout/stressEngine.d.ts +19 -0
  32. package/dist/types/layoutEngines.d.ts +2 -0
  33. package/dist/types/pipeline.d.ts +2 -0
  34. package/dist/types/version.d.ts +1 -1
  35. package/dist/version.js +1 -1
  36. package/dist/viewport.js +4 -4
  37. package/dist/walkEncoding.js +4 -4
  38. package/dist/walkHighlight.js +5 -5
  39. package/package.json +1 -1
  40. package/dist/chunks/{chunk-RX5CSWJW.js → chunk-VUBLSA6P.js} +4 -4
@@ -15,7 +15,7 @@ import {
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  routeNodes,
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  takeRoutes,
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  withDeletionRoutes
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- } from "./chunk-C6USNTTP.js";
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+ } from "./chunk-STNG3Y5X.js";
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  import {
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  anchorGraph
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  } from "./chunk-ST2IBUAN.js";
@@ -74,13 +74,14 @@ function engineRequest(graph, scaling, settings) {
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  linearLayout: settings.linearLayout,
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  ...spaced.opts,
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  componentSeparation: COMPONENT_SEPARATION * (settings.componentSeparation ?? 1),
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- ...anchored ? { rotateComponents: false } : {}
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+ ...anchored ? { rotateComponents: false } : {},
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+ engine: settings.engine ?? "fmmm"
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  }
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  };
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  }
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  function engineKey(graph, settings) {
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  const anchored = graph.nodes.some(isBackbone);
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- return `${settings.quality}|${settings.linearLayout}|${settings.bubbleSpread}|${settings.spacing ?? 1}|${settings.componentSeparation ?? 1}|${settings.showDeletionEdges !== false}|${anchored}|${graph.referencePath ?? ""}`;
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+ return `${settings.engine ?? "fmmm"}|${settings.quality}|${settings.linearLayout}|${settings.bubbleSpread}|${settings.spacing ?? 1}|${settings.componentSeparation ?? 1}|${settings.showDeletionEdges !== false}|${anchored}|${graph.referencePath ?? ""}`;
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  }
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  async function forceLayout(graph, settings, engine) {
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  const spread = spreadFor(settings.bubbleSpread);
@@ -3,10 +3,10 @@ import {
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  RAMP_GRADIENT_STOPS,
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  rampHueCss,
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  rampStops
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- } from "./chunk-ZHCDYSA5.js";
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+ } from "./chunk-GD7FYNGS.js";
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  import {
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  REFERENCE_RAMP_ALT_CSS
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- } from "./chunk-RX5CSWJW.js";
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+ } from "./chunk-VUBLSA6P.js";
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  import {
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  LABEL_CHAR_PX
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  } from "./chunk-AB35TJST.js";
@@ -4,6 +4,10 @@ import {
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  genesFromGff3Lines,
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  genesFromText
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  } from "../chunks/chunk-BXEPA4KS.js";
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+ import {
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+ layoutEngine
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+ } from "../chunks/chunk-L53SXJZI.js";
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+ import "../chunks/chunk-O4TGF4WS.js";
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  import {
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  LAYOUT_MODES,
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  layoutModeByValue
@@ -13,43 +17,42 @@ import "../chunks/chunk-TEDQJPMI.js";
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  import "../chunks/chunk-LOEA5IHZ.js";
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  import "../chunks/chunk-L3O7AWLI.js";
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  import "../chunks/chunk-TZFWUT2C.js";
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+ import "../chunks/chunk-RVS2QCOX.js";
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  import "../chunks/chunk-HNQPEMYE.js";
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  import "../chunks/chunk-C44YRP5F.js";
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- import "../chunks/chunk-RVS2QCOX.js";
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- import {
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- loadBandage
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- } from "../chunks/chunk-7XHHVYG7.js";
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+ import "../chunks/chunk-7XHHVYG7.js";
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  import {
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  figureSvg
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- } from "../chunks/chunk-KKU6JRJC.js";
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+ } from "../chunks/chunk-5HF753RL.js";
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  import "../chunks/chunk-47DYCZOK.js";
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- import "../chunks/chunk-V5BPIOLS.js";
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+ import "../chunks/chunk-7R2UGY4I.js";
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  import {
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  genesOnRow,
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  placeRowGenes
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- } from "../chunks/chunk-PJESIRDU.js";
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+ } from "../chunks/chunk-YQZWW2V6.js";
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  import "../chunks/chunk-CH3DLBUT.js";
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  import "../chunks/chunk-4BYTEJGW.js";
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- import "../chunks/chunk-BUBZ32IC.js";
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  import "../chunks/chunk-3S3YVOJ7.js";
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- import "../chunks/chunk-LPFN4POU.js";
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- import "../chunks/chunk-AMHZMY6E.js";
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- import "../chunks/chunk-ZKGM7VLA.js";
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- import "../chunks/chunk-X4VVPLI5.js";
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+ import "../chunks/chunk-BUBZ32IC.js";
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+ import "../chunks/chunk-HE3NRWH7.js";
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+ import "../chunks/chunk-M6SAUIYR.js";
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+ import "../chunks/chunk-A7VOULBP.js";
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+ import "../chunks/chunk-6CO564AN.js";
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  import "../chunks/chunk-GOY6REMT.js";
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  import {
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  forceLayout,
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  loadGraph
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- } from "../chunks/chunk-6UACM7VU.js";
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+ } from "../chunks/chunk-YFRTTBCZ.js";
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  import "../chunks/chunk-PUG7LXDF.js";
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  import "../chunks/chunk-IGVV37VI.js";
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  import "../chunks/chunk-72N5DJHZ.js";
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  import "../chunks/chunk-QYBZZI5H.js";
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  import "../chunks/chunk-CDLPYR5O.js";
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- import "../chunks/chunk-C6USNTTP.js";
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- import "../chunks/chunk-ZHCDYSA5.js";
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- import "../chunks/chunk-RX5CSWJW.js";
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+ import "../chunks/chunk-STNG3Y5X.js";
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+ import "../chunks/chunk-GD7FYNGS.js";
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+ import "../chunks/chunk-VUBLSA6P.js";
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  import "../chunks/chunk-UMNCCYBN.js";
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+ import "../chunks/chunk-PBENCR5L.js";
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  import "../chunks/chunk-DKOB2OPC.js";
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  import "../chunks/chunk-YMSSF2RK.js";
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  import "../chunks/chunk-MREQ7GIA.js";
@@ -60,12 +63,11 @@ import {
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  walkRows
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  } from "../chunks/chunk-SZNZ2T6D.js";
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  import "../chunks/chunk-X5L37W4J.js";
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- import "../chunks/chunk-ST2IBUAN.js";
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  import "../chunks/chunk-ES2N6V56.js";
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+ import "../chunks/chunk-ST2IBUAN.js";
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  import "../chunks/chunk-N62KBLFC.js";
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  import "../chunks/chunk-AB35TJST.js";
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  import "../chunks/chunk-TAMCZHLW.js";
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- import "../chunks/chunk-PBENCR5L.js";
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  import "../chunks/chunk-UVBGRJQX.js";
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  import "../chunks/chunk-6JEWNXCQ.js";
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  import "../chunks/chunk-JKJWSY4V.js";
@@ -178,12 +180,6 @@ async function indexedGenes(file, index, format, contigs, bind) {
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  features: format === "gff3" ? genesFromGff3Lines(lines) : genesFromBed(lines.join("\n"))
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  };
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  }
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- var engine = async (request) => {
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- const bandage = await loadBandage();
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- const start = performance.now();
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- const result = bandage.computeLayout(request.graph, request.options);
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- return { result, duration: performance.now() - start };
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- };
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  async function exists(location) {
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  try {
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  await (isUrl(location) ? fetchOk(location, { method: "HEAD" }) : access(location));
@@ -240,11 +236,12 @@ async function renderSpec(spec, base) {
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  quality: spec.quality ?? 2,
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  linearLayout: false,
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  bubbleSpread: spec.bubbleSpread ?? "auto",
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+ engine: spec.engine,
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  spacing: spec.spacing,
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  componentSeparation: spec.componentSeparation,
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  showDeletionEdges: !!spec.showDeletionEdges
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  },
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- engine
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+ layoutEngine
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  )).result;
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  const bars = spec.walkStrip ? walkRows(graph, source.region) : void 0;
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  const stripRows = bars && {
package/dist/figure.js CHANGED
@@ -1,28 +1,29 @@
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  import {
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  figureSvg
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- } from "./chunks/chunk-KKU6JRJC.js";
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+ } from "./chunks/chunk-5HF753RL.js";
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  import "./chunks/chunk-47DYCZOK.js";
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- import "./chunks/chunk-V5BPIOLS.js";
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- import "./chunks/chunk-PJESIRDU.js";
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+ import "./chunks/chunk-7R2UGY4I.js";
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+ import "./chunks/chunk-YQZWW2V6.js";
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  import "./chunks/chunk-CH3DLBUT.js";
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  import "./chunks/chunk-4BYTEJGW.js";
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- import "./chunks/chunk-BUBZ32IC.js";
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  import "./chunks/chunk-3S3YVOJ7.js";
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- import "./chunks/chunk-LPFN4POU.js";
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- import "./chunks/chunk-AMHZMY6E.js";
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- import "./chunks/chunk-ZKGM7VLA.js";
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- import "./chunks/chunk-X4VVPLI5.js";
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+ import "./chunks/chunk-BUBZ32IC.js";
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+ import "./chunks/chunk-HE3NRWH7.js";
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+ import "./chunks/chunk-M6SAUIYR.js";
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+ import "./chunks/chunk-A7VOULBP.js";
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+ import "./chunks/chunk-6CO564AN.js";
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  import "./chunks/chunk-GOY6REMT.js";
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- import "./chunks/chunk-6UACM7VU.js";
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+ import "./chunks/chunk-YFRTTBCZ.js";
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  import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
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- import "./chunks/chunk-C6USNTTP.js";
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- import "./chunks/chunk-ZHCDYSA5.js";
24
- import "./chunks/chunk-RX5CSWJW.js";
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+ import "./chunks/chunk-STNG3Y5X.js";
23
+ import "./chunks/chunk-GD7FYNGS.js";
24
+ import "./chunks/chunk-VUBLSA6P.js";
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  import "./chunks/chunk-UMNCCYBN.js";
26
+ import "./chunks/chunk-PBENCR5L.js";
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  import "./chunks/chunk-DKOB2OPC.js";
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  import "./chunks/chunk-YMSSF2RK.js";
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  import "./chunks/chunk-MREQ7GIA.js";
@@ -30,12 +31,11 @@ import "./chunks/chunk-Y3IOTZJA.js";
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  import "./chunks/chunk-EZPBJPK6.js";
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  import "./chunks/chunk-SZNZ2T6D.js";
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  import "./chunks/chunk-X5L37W4J.js";
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- import "./chunks/chunk-ST2IBUAN.js";
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  import "./chunks/chunk-ES2N6V56.js";
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+ import "./chunks/chunk-ST2IBUAN.js";
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  import "./chunks/chunk-N62KBLFC.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-PBENCR5L.js";
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  import "./chunks/chunk-UVBGRJQX.js";
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  import "./chunks/chunk-6JEWNXCQ.js";
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  import "./chunks/chunk-JKJWSY4V.js";
package/dist/index.js CHANGED
@@ -1,6 +1,12 @@
1
1
  import {
2
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  wheelZoomFactor
3
3
  } from "./chunks/chunk-TDQLINVI.js";
4
+ import {
5
+ connectorAt,
6
+ drawTubeMapConnectors,
7
+ referenceNodes,
8
+ tubeMapConnectors
9
+ } from "./chunks/chunk-GQ2AOHU4.js";
4
10
  import {
5
11
  drawTubeMap,
6
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  tubeMapPicture
@@ -9,6 +15,10 @@ import {
9
15
  tubeMapFrame,
10
16
  tubeMapNodeAt
11
17
  } from "./chunks/chunk-VZQ4FKLR.js";
18
+ import {
19
+ referenceKnots,
20
+ warpX
21
+ } from "./chunks/chunk-KQFOCDFY.js";
12
22
  import {
13
23
  drawTubeMapGenes,
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24
  tubeMapGenes
@@ -16,23 +26,13 @@ import {
16
26
  import "./chunks/chunk-EJ5OZTCK.js";
17
27
  import {
18
28
  tubeMapNodeColors
19
- } from "./chunks/chunk-ZZA2AFB4.js";
20
- import {
21
- referenceKnots,
22
- warpX
23
- } from "./chunks/chunk-KQFOCDFY.js";
29
+ } from "./chunks/chunk-P2KU2TXS.js";
24
30
  import {
25
31
  drawTubeMapRuler,
26
32
  referenceBoxes,
27
33
  rulerBoxes,
28
34
  tubeX
29
35
  } from "./chunks/chunk-CS3E4ETM.js";
30
- import {
31
- connectorAt,
32
- drawTubeMapConnectors,
33
- referenceNodes,
34
- tubeMapConnectors
35
- } from "./chunks/chunk-GQ2AOHU4.js";
36
36
  import {
37
37
  bubbleHalos
38
38
  } from "./chunks/chunk-ISEI2FH3.js";
@@ -60,7 +60,14 @@ import {
60
60
  drawReferenceStrip,
61
61
  referenceStripBlocks,
62
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  stripBlockAt
63
- } from "./chunks/chunk-SMQ545MU.js";
63
+ } from "./chunks/chunk-3GMVZMKD.js";
64
+ import {
65
+ layoutEngine
66
+ } from "./chunks/chunk-L53SXJZI.js";
67
+ import {
68
+ LAYOUT_ENGINES,
69
+ stressLayout
70
+ } from "./chunks/chunk-O4TGF4WS.js";
64
71
  import {
65
72
  FORCE_LAYOUT_LABEL,
66
73
  LAYOUT_MODES,
@@ -72,15 +79,15 @@ import "./chunks/chunk-TEDQJPMI.js";
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  import "./chunks/chunk-LOEA5IHZ.js";
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  import "./chunks/chunk-L3O7AWLI.js";
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  import "./chunks/chunk-TZFWUT2C.js";
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+ import "./chunks/chunk-RVS2QCOX.js";
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  import "./chunks/chunk-HNQPEMYE.js";
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  import "./chunks/chunk-C44YRP5F.js";
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- import "./chunks/chunk-RVS2QCOX.js";
78
85
  import {
79
86
  loadBandage
80
87
  } from "./chunks/chunk-7XHHVYG7.js";
81
88
  import {
82
89
  figureSvg
83
- } from "./chunks/chunk-KKU6JRJC.js";
90
+ } from "./chunks/chunk-5HF753RL.js";
84
91
  import {
85
92
  svgCanvas
86
93
  } from "./chunks/chunk-47DYCZOK.js";
@@ -94,7 +101,7 @@ import {
94
101
  walkMarksTree,
95
102
  walkStripFrame,
96
103
  walkStripLabelsTree
97
- } from "./chunks/chunk-V5BPIOLS.js";
104
+ } from "./chunks/chunk-7R2UGY4I.js";
98
105
  import {
99
106
  BAR_PX,
100
107
  DISAGREES,
@@ -116,24 +123,24 @@ import {
116
123
  walkRowsKey,
117
124
  walkRowsKeyTree,
118
125
  walkRowsTree
119
- } from "./chunks/chunk-PJESIRDU.js";
126
+ } from "./chunks/chunk-YQZWW2V6.js";
120
127
  import {
121
128
  Canvas2DRenderer
122
129
  } from "./chunks/chunk-CH3DLBUT.js";
123
130
  import {
124
131
  getDpr
125
132
  } from "./chunks/chunk-4BYTEJGW.js";
126
- import {
127
- genePins
128
- } from "./chunks/chunk-BUBZ32IC.js";
129
133
  import {
130
134
  EXON_COLOR,
131
135
  exonOutlineTree,
132
136
  exonStretches
133
137
  } from "./chunks/chunk-3S3YVOJ7.js";
138
+ import {
139
+ genePins
140
+ } from "./chunks/chunk-BUBZ32IC.js";
134
141
  import {
135
142
  version
136
- } from "./chunks/chunk-LPFN4POU.js";
143
+ } from "./chunks/chunk-HE3NRWH7.js";
137
144
  import {
138
145
  axisScaleOf,
139
146
  contains,
@@ -141,12 +148,12 @@ import {
141
148
  screenToLayout,
142
149
  viewportOf,
143
150
  zoomAbout
144
- } from "./chunks/chunk-AMHZMY6E.js";
151
+ } from "./chunks/chunk-M6SAUIYR.js";
145
152
  import {
146
153
  facetLifts,
147
154
  walkHighlight,
148
155
  walkLift
149
- } from "./chunks/chunk-ZKGM7VLA.js";
156
+ } from "./chunks/chunk-A7VOULBP.js";
150
157
  import {
151
158
  WALK_FIELDS,
152
159
  WALK_SCHEMES,
@@ -154,7 +161,7 @@ import {
154
161
  encodingSwatchCss,
155
162
  resolveEncoding,
156
163
  schemeCss
157
- } from "./chunks/chunk-X4VVPLI5.js";
164
+ } from "./chunks/chunk-6CO564AN.js";
158
165
  import {
159
166
  rangeText,
160
167
  walkKey,
@@ -170,25 +177,32 @@ import {
170
177
  forceLayout,
171
178
  layoutExtent,
172
179
  loadGraph
173
- } from "./chunks/chunk-6UACM7VU.js";
180
+ } from "./chunks/chunk-YFRTTBCZ.js";
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  import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
179
- import "./chunks/chunk-C6USNTTP.js";
186
+ import "./chunks/chunk-STNG3Y5X.js";
180
187
  import {
181
188
  RAMP_GRADIENT_CSS,
182
189
  rampHue,
183
190
  rampHueCss,
184
191
  rampStops
185
- } from "./chunks/chunk-ZHCDYSA5.js";
192
+ } from "./chunks/chunk-GD7FYNGS.js";
186
193
  import {
187
194
  REFERENCE_RAMP_MAX_HUE,
188
195
  buildGeometry,
189
196
  computeReferenceRamp
190
- } from "./chunks/chunk-RX5CSWJW.js";
197
+ } from "./chunks/chunk-VUBLSA6P.js";
191
198
  import "./chunks/chunk-UMNCCYBN.js";
199
+ import {
200
+ NODE_WIDTHS,
201
+ maxNodeWidthPx,
202
+ meanDepth,
203
+ nodeInk,
204
+ nodeWidthPx
205
+ } from "./chunks/chunk-PBENCR5L.js";
192
206
  import {
193
207
  HALO_FACTOR,
194
208
  LEGEND_INSET_PX,
@@ -212,8 +226,8 @@ import {
212
226
  pathColorsLegible,
213
227
  pathLegend
214
228
  } from "./chunks/chunk-X5L37W4J.js";
215
- import "./chunks/chunk-ST2IBUAN.js";
216
229
  import "./chunks/chunk-ES2N6V56.js";
230
+ import "./chunks/chunk-ST2IBUAN.js";
217
231
  import {
218
232
  formatBp
219
233
  } from "./chunks/chunk-N62KBLFC.js";
@@ -223,13 +237,6 @@ import {
223
237
  LABEL_PX
224
238
  } from "./chunks/chunk-AB35TJST.js";
225
239
  import "./chunks/chunk-TAMCZHLW.js";
226
- import {
227
- NODE_WIDTHS,
228
- maxNodeWidthPx,
229
- meanDepth,
230
- nodeInk,
231
- nodeWidthPx
232
- } from "./chunks/chunk-PBENCR5L.js";
233
240
  import {
234
241
  BUBBLE_SPREADS
235
242
  } from "./chunks/chunk-UVBGRJQX.js";
@@ -305,6 +312,7 @@ export {
305
312
  LABEL_CHAR_PX,
306
313
  LABEL_PAD,
307
314
  LABEL_PX,
315
+ LAYOUT_ENGINES,
308
316
  LAYOUT_MODES,
309
317
  LEGEND_INSET_PX,
310
318
  NODE_WIDTHS,
@@ -375,6 +383,7 @@ export {
375
383
  getDpr,
376
384
  graphBackbone,
377
385
  haplotypeWanted,
386
+ layoutEngine,
378
387
  layoutExtent,
379
388
  layoutLabels,
380
389
  layoutModeByValue,
@@ -419,6 +428,7 @@ export {
419
428
  screenToLayout,
420
429
  segmentAt,
421
430
  serializeEl,
431
+ stressLayout,
422
432
  stripBlockAt,
423
433
  stripGeneGaps,
424
434
  stripMarks,
@@ -3,7 +3,7 @@ import {
3
3
  routeNodes,
4
4
  takeRoutes,
5
5
  withDeletionRoutes
6
- } from "../chunks/chunk-C6USNTTP.js";
6
+ } from "../chunks/chunk-STNG3Y5X.js";
7
7
  export {
8
8
  closableDeletions,
9
9
  routeNodes,
@@ -0,0 +1,11 @@
1
+ import {
2
+ LAYOUT_ENGINES,
3
+ LAYOUT_ENGINE_VALUES,
4
+ stressLayout
5
+ } from "../chunks/chunk-O4TGF4WS.js";
6
+ import "../chunks/chunk-FYQWPEEY.js";
7
+ export {
8
+ LAYOUT_ENGINES,
9
+ LAYOUT_ENGINE_VALUES,
10
+ stressLayout
11
+ };
@@ -21,18 +21,18 @@ import {
21
21
  walkRowsKey,
22
22
  walkRowsKeyTree,
23
23
  walkRowsTree
24
- } from "../chunks/chunk-PJESIRDU.js";
25
- import "../chunks/chunk-ZHCDYSA5.js";
26
- import "../chunks/chunk-RX5CSWJW.js";
24
+ } from "../chunks/chunk-YQZWW2V6.js";
25
+ import "../chunks/chunk-GD7FYNGS.js";
26
+ import "../chunks/chunk-VUBLSA6P.js";
27
27
  import "../chunks/chunk-UMNCCYBN.js";
28
+ import "../chunks/chunk-PBENCR5L.js";
28
29
  import "../chunks/chunk-Y3IOTZJA.js";
29
30
  import "../chunks/chunk-X5L37W4J.js";
30
- import "../chunks/chunk-ST2IBUAN.js";
31
31
  import "../chunks/chunk-ES2N6V56.js";
32
+ import "../chunks/chunk-ST2IBUAN.js";
32
33
  import "../chunks/chunk-N62KBLFC.js";
33
34
  import "../chunks/chunk-AB35TJST.js";
34
35
  import "../chunks/chunk-TAMCZHLW.js";
35
- import "../chunks/chunk-PBENCR5L.js";
36
36
  import "../chunks/chunk-4EMPBO7S.js";
37
37
  import "../chunks/chunk-2CVHXFK7.js";
38
38
  import "../chunks/chunk-CPMHA4W5.js";
@@ -8,19 +8,19 @@ import {
8
8
  walkMarksTree,
9
9
  walkStripFrame,
10
10
  walkStripLabelsTree
11
- } from "../chunks/chunk-V5BPIOLS.js";
12
- import "../chunks/chunk-PJESIRDU.js";
13
- import "../chunks/chunk-ZHCDYSA5.js";
14
- import "../chunks/chunk-RX5CSWJW.js";
11
+ } from "../chunks/chunk-7R2UGY4I.js";
12
+ import "../chunks/chunk-YQZWW2V6.js";
13
+ import "../chunks/chunk-GD7FYNGS.js";
14
+ import "../chunks/chunk-VUBLSA6P.js";
15
15
  import "../chunks/chunk-UMNCCYBN.js";
16
+ import "../chunks/chunk-PBENCR5L.js";
16
17
  import "../chunks/chunk-Y3IOTZJA.js";
17
18
  import "../chunks/chunk-X5L37W4J.js";
18
- import "../chunks/chunk-ST2IBUAN.js";
19
19
  import "../chunks/chunk-ES2N6V56.js";
20
+ import "../chunks/chunk-ST2IBUAN.js";
20
21
  import "../chunks/chunk-N62KBLFC.js";
21
22
  import "../chunks/chunk-AB35TJST.js";
22
23
  import "../chunks/chunk-TAMCZHLW.js";
23
- import "../chunks/chunk-PBENCR5L.js";
24
24
  import "../chunks/chunk-4EMPBO7S.js";
25
25
  import "../chunks/chunk-2CVHXFK7.js";
26
26
  import "../chunks/chunk-CPMHA4W5.js";
@@ -0,0 +1,9 @@
1
+ import {
2
+ layoutEngine
3
+ } from "./chunks/chunk-L53SXJZI.js";
4
+ import "./chunks/chunk-O4TGF4WS.js";
5
+ import "./chunks/chunk-7XHHVYG7.js";
6
+ import "./chunks/chunk-FYQWPEEY.js";
7
+ export {
8
+ layoutEngine
9
+ };
@@ -10,14 +10,14 @@ import "./chunks/chunk-TEDQJPMI.js";
10
10
  import "./chunks/chunk-LOEA5IHZ.js";
11
11
  import "./chunks/chunk-L3O7AWLI.js";
12
12
  import "./chunks/chunk-TZFWUT2C.js";
13
+ import "./chunks/chunk-RVS2QCOX.js";
13
14
  import "./chunks/chunk-HNQPEMYE.js";
14
15
  import "./chunks/chunk-C44YRP5F.js";
15
- import "./chunks/chunk-RVS2QCOX.js";
16
16
  import "./chunks/chunk-EZPBJPK6.js";
17
17
  import "./chunks/chunk-SZNZ2T6D.js";
18
18
  import "./chunks/chunk-X5L37W4J.js";
19
- import "./chunks/chunk-ST2IBUAN.js";
20
19
  import "./chunks/chunk-ES2N6V56.js";
20
+ import "./chunks/chunk-ST2IBUAN.js";
21
21
  import "./chunks/chunk-N62KBLFC.js";
22
22
  import "./chunks/chunk-AB35TJST.js";
23
23
  import "./chunks/chunk-TAMCZHLW.js";
package/dist/pipeline.js CHANGED
@@ -9,15 +9,15 @@ import {
9
9
  forceLayout,
10
10
  layoutExtent,
11
11
  loadGraph
12
- } from "./chunks/chunk-6UACM7VU.js";
12
+ } from "./chunks/chunk-YFRTTBCZ.js";
13
13
  import "./chunks/chunk-PUG7LXDF.js";
14
14
  import "./chunks/chunk-IGVV37VI.js";
15
15
  import "./chunks/chunk-72N5DJHZ.js";
16
16
  import "./chunks/chunk-QYBZZI5H.js";
17
17
  import "./chunks/chunk-CDLPYR5O.js";
18
- import "./chunks/chunk-C6USNTTP.js";
19
- import "./chunks/chunk-ST2IBUAN.js";
18
+ import "./chunks/chunk-STNG3Y5X.js";
20
19
  import "./chunks/chunk-ES2N6V56.js";
20
+ import "./chunks/chunk-ST2IBUAN.js";
21
21
  import "./chunks/chunk-TAMCZHLW.js";
22
22
  import "./chunks/chunk-UVBGRJQX.js";
23
23
  import "./chunks/chunk-6JEWNXCQ.js";
@@ -4,17 +4,17 @@ import {
4
4
  rampHue,
5
5
  rampHueCss,
6
6
  rampStops
7
- } from "./chunks/chunk-ZHCDYSA5.js";
8
- import "./chunks/chunk-RX5CSWJW.js";
7
+ } from "./chunks/chunk-GD7FYNGS.js";
8
+ import "./chunks/chunk-VUBLSA6P.js";
9
9
  import "./chunks/chunk-UMNCCYBN.js";
10
+ import "./chunks/chunk-PBENCR5L.js";
10
11
  import "./chunks/chunk-Y3IOTZJA.js";
11
12
  import "./chunks/chunk-X5L37W4J.js";
12
- import "./chunks/chunk-ST2IBUAN.js";
13
13
  import "./chunks/chunk-ES2N6V56.js";
14
+ import "./chunks/chunk-ST2IBUAN.js";
14
15
  import "./chunks/chunk-N62KBLFC.js";
15
16
  import "./chunks/chunk-AB35TJST.js";
16
17
  import "./chunks/chunk-TAMCZHLW.js";
17
- import "./chunks/chunk-PBENCR5L.js";
18
18
  import "./chunks/chunk-4EMPBO7S.js";
19
19
  import "./chunks/chunk-2CVHXFK7.js";
20
20
  import "./chunks/chunk-CPMHA4W5.js";
@@ -7,17 +7,17 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-SMQ545MU.js";
11
- import "./chunks/chunk-RX5CSWJW.js";
10
+ } from "./chunks/chunk-3GMVZMKD.js";
11
+ import "./chunks/chunk-VUBLSA6P.js";
12
12
  import "./chunks/chunk-UMNCCYBN.js";
13
+ import "./chunks/chunk-PBENCR5L.js";
13
14
  import "./chunks/chunk-Y3IOTZJA.js";
14
15
  import "./chunks/chunk-X5L37W4J.js";
15
- import "./chunks/chunk-ST2IBUAN.js";
16
16
  import "./chunks/chunk-ES2N6V56.js";
17
+ import "./chunks/chunk-ST2IBUAN.js";
17
18
  import "./chunks/chunk-N62KBLFC.js";
18
19
  import "./chunks/chunk-AB35TJST.js";
19
20
  import "./chunks/chunk-TAMCZHLW.js";
20
- import "./chunks/chunk-PBENCR5L.js";
21
21
  import "./chunks/chunk-4EMPBO7S.js";
22
22
  import "./chunks/chunk-2CVHXFK7.js";
23
23
  import "./chunks/chunk-CPMHA4W5.js";
@@ -11,16 +11,16 @@ import {
11
11
  endTangent,
12
12
  getNodeColor,
13
13
  hslToRgb
14
- } from "../chunks/chunk-RX5CSWJW.js";
14
+ } from "../chunks/chunk-VUBLSA6P.js";
15
15
  import "../chunks/chunk-UMNCCYBN.js";
16
+ import "../chunks/chunk-PBENCR5L.js";
16
17
  import "../chunks/chunk-Y3IOTZJA.js";
17
18
  import "../chunks/chunk-X5L37W4J.js";
18
- import "../chunks/chunk-ST2IBUAN.js";
19
19
  import "../chunks/chunk-ES2N6V56.js";
20
+ import "../chunks/chunk-ST2IBUAN.js";
20
21
  import "../chunks/chunk-N62KBLFC.js";
21
22
  import "../chunks/chunk-AB35TJST.js";
22
23
  import "../chunks/chunk-TAMCZHLW.js";
23
- import "../chunks/chunk-PBENCR5L.js";
24
24
  import "../chunks/chunk-4EMPBO7S.js";
25
25
  import "../chunks/chunk-2CVHXFK7.js";
26
26
  import "../chunks/chunk-CPMHA4W5.js";
@@ -1,16 +1,16 @@
1
1
  import {
2
2
  tubeMapNodeColors
3
- } from "../chunks/chunk-ZZA2AFB4.js";
4
- import "../chunks/chunk-RX5CSWJW.js";
3
+ } from "../chunks/chunk-P2KU2TXS.js";
4
+ import "../chunks/chunk-VUBLSA6P.js";
5
5
  import "../chunks/chunk-UMNCCYBN.js";
6
+ import "../chunks/chunk-PBENCR5L.js";
6
7
  import "../chunks/chunk-Y3IOTZJA.js";
7
8
  import "../chunks/chunk-X5L37W4J.js";
8
- import "../chunks/chunk-ST2IBUAN.js";
9
9
  import "../chunks/chunk-ES2N6V56.js";
10
+ import "../chunks/chunk-ST2IBUAN.js";
10
11
  import "../chunks/chunk-N62KBLFC.js";
11
12
  import "../chunks/chunk-AB35TJST.js";
12
13
  import "../chunks/chunk-TAMCZHLW.js";
13
- import "../chunks/chunk-PBENCR5L.js";
14
14
  import "../chunks/chunk-4EMPBO7S.js";
15
15
  import "../chunks/chunk-2CVHXFK7.js";
16
16
  import "../chunks/chunk-CPMHA4W5.js";
@@ -1,6 +1,7 @@
1
1
  import type { BubbleSpread } from '../bubbleSpreads.js';
2
2
  import type { FigureOptions } from '../figure.js';
3
3
  import type { GbzSource } from '../gbzCut.js';
4
+ import type { LayoutEngineKind } from '../layout/stressEngine.js';
4
5
  import type { LayoutModeValue } from '../layoutModes.js';
5
6
  import type { WalkLayer } from '../walkEncoding.js';
6
7
  export interface FigureSpec extends Omit<FigureOptions, 'walks' | 'region' | 'genes' | 'spec' | 'walkStrip'> {
@@ -11,6 +12,7 @@ export interface FigureSpec extends Omit<FigureOptions, 'walks' | 'region' | 'ge
11
12
  layout?: LayoutModeValue;
12
13
  quality?: number;
13
14
  bubbleSpread?: BubbleSpread;
15
+ engine?: LayoutEngineKind;
14
16
  spacing?: number;
15
17
  componentSeparation?: number;
16
18
  walks?: (string | WalkLayer)[];