@jbrowse/bandage-core 11.8.0 → 11.10.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (90) hide show
  1. package/dist/bubbles/bubbleHalos.js +6 -6
  2. package/dist/bubbles/classifyBubble.js +5 -5
  3. package/dist/bubbles/superbubbles.js +7 -7
  4. package/dist/chunks/{chunk-S4CH434Z.js → chunk-2A6Z2DHF.js} +1 -1
  5. package/dist/chunks/{chunk-6MD4VS2F.js → chunk-2MXFG3W7.js} +1 -1
  6. package/dist/chunks/{chunk-L2RQV23D.js → chunk-2NCZ5YYN.js} +1 -1
  7. package/dist/chunks/{chunk-ZKIH2USC.js → chunk-337LZP7C.js} +1 -1
  8. package/dist/chunks/{chunk-2RCKHCF7.js → chunk-3DHGSHC3.js} +1 -1
  9. package/dist/chunks/{chunk-3CXZUC2Y.js → chunk-3GORESBG.js} +1 -1
  10. package/dist/chunks/{chunk-R4XCTRIU.js → chunk-4BYGFDQB.js} +1 -1
  11. package/dist/chunks/{chunk-NHOXLUIL.js → chunk-4JDO7ZLN.js} +2 -2
  12. package/dist/chunks/{chunk-7GDNDQD7.js → chunk-4KBZ7WPP.js} +176 -101
  13. package/dist/chunks/{chunk-2H3ALI6L.js → chunk-53DZE3SA.js} +184 -161
  14. package/dist/chunks/{chunk-YF6T33PU.js → chunk-54C73ICS.js} +37 -17
  15. package/dist/chunks/{chunk-U6JPSXJ3.js → chunk-55DRWHBF.js} +9 -9
  16. package/dist/chunks/{chunk-4OVIUCSB.js → chunk-77O67GIB.js} +1 -1
  17. package/dist/chunks/{chunk-7PEYA3NA.js → chunk-7YSIP3O2.js} +2 -2
  18. package/dist/chunks/{chunk-LA6JHEVV.js → chunk-ALOF5SOT.js} +1 -1
  19. package/dist/chunks/{chunk-3XYLEK4H.js → chunk-ARXDNQLF.js} +1 -1
  20. package/dist/chunks/{chunk-6CXLLJ2C.js → chunk-AURNOR27.js} +3 -3
  21. package/dist/chunks/{chunk-G4WQBRDS.js → chunk-BDS5VZYZ.js} +3 -3
  22. package/dist/chunks/{chunk-MO4DIRHD.js → chunk-CHGTUO3C.js} +13 -13
  23. package/dist/chunks/{chunk-X5ULFAMM.js → chunk-HEYIAMTC.js} +2 -2
  24. package/dist/chunks/{chunk-S7BCZVRK.js → chunk-HIN56TLA.js} +1 -1
  25. package/dist/chunks/{chunk-YIWN32ZX.js → chunk-HNNP5QUN.js} +1 -1
  26. package/dist/chunks/{chunk-XOIYBEU7.js → chunk-I53QYITQ.js} +1 -1
  27. package/dist/chunks/{chunk-SDDMV2MM.js → chunk-IZKM4NY7.js} +1 -1
  28. package/dist/chunks/{chunk-SIXFXXRI.js → chunk-J7RNXBXA.js} +3 -3
  29. package/dist/chunks/{chunk-735MPLUL.js → chunk-JJV2GT2Z.js} +22 -14
  30. package/dist/chunks/{chunk-S3ICPPXC.js → chunk-JVT3XTKN.js} +3 -3
  31. package/dist/chunks/{chunk-J4PDHWP2.js → chunk-KKHXMJEE.js} +1 -1
  32. package/dist/chunks/{chunk-22ZMVREZ.js → chunk-NAYS472K.js} +1 -1
  33. package/dist/chunks/{chunk-OIOAK7BS.js → chunk-NWEVR2OQ.js} +1 -1
  34. package/dist/chunks/{chunk-VSRRIFRF.js → chunk-P2GJBFNA.js} +1 -1
  35. package/dist/chunks/{chunk-N2GAA7RB.js → chunk-RT4U3DH3.js} +1 -1
  36. package/dist/chunks/{chunk-AXE3RR7J.js → chunk-S6E3PMH7.js} +1 -1
  37. package/dist/chunks/{chunk-NQWEYJDD.js → chunk-SPEB75UH.js} +1 -1
  38. package/dist/chunks/{chunk-4YPCUVMC.js → chunk-SZYFZNCO.js} +2 -2
  39. package/dist/chunks/{chunk-G3GLGDKV.js → chunk-TQ26XEFL.js} +2 -2
  40. package/dist/chunks/{chunk-N4AJV4GH.js → chunk-UVRCXTBY.js} +37 -10
  41. package/dist/chunks/{chunk-YEDZ37PH.js → chunk-VNCHWWLG.js} +1 -1
  42. package/dist/chunks/{chunk-JKIAHYAW.js → chunk-VQ353UDK.js} +1 -1
  43. package/dist/chunks/{chunk-R3NPBUKT.js → chunk-YQAZNH37.js} +7 -7
  44. package/dist/cli/figure.js +28 -28
  45. package/dist/cli/fold.js +6 -6
  46. package/dist/deletionEdges.js +2 -2
  47. package/dist/figure.js +24 -24
  48. package/dist/figureData.js +22 -22
  49. package/dist/figureScene.js +15 -15
  50. package/dist/figureSettings.js +6 -6
  51. package/dist/foldVariants.js +2 -2
  52. package/dist/genes/genePins.js +3 -3
  53. package/dist/graphLabels.js +4 -4
  54. package/dist/index.js +38 -38
  55. package/dist/labelLayout.js +8 -8
  56. package/dist/layout/forceCache.js +6 -6
  57. package/dist/layout/mergeRuns.js +2 -2
  58. package/dist/layout/orientToReference.js +2 -2
  59. package/dist/layout/tubeMapLayout.js +7 -7
  60. package/dist/layout/walkRowDraw.js +9 -9
  61. package/dist/layout/walkStrip.js +10 -10
  62. package/dist/layoutModes.js +8 -8
  63. package/dist/pathColors.js +5 -5
  64. package/dist/pipeline.js +5 -5
  65. package/dist/referenceStrip.js +9 -9
  66. package/dist/renderer/GeometryBuilder.js +8 -8
  67. package/dist/renderer/walkLanes.js +4 -2
  68. package/dist/tubeMap/axis.js +5 -5
  69. package/dist/tubeMap/bundle.js +8 -8
  70. package/dist/tubeMap/coarsen.js +8 -8
  71. package/dist/tubeMap/deviations.js +9 -9
  72. package/dist/tubeMap/draw.js +3 -3
  73. package/dist/tubeMap/genes.js +6 -6
  74. package/dist/tubeMap/nodeColors.js +9 -9
  75. package/dist/tubeMap/reads.js +2 -2
  76. package/dist/types/renderer/walkLanes.d.ts +19 -2
  77. package/dist/types/util/geometry.d.ts +1 -1
  78. package/dist/types/version.d.ts +1 -1
  79. package/dist/types/walkEncoding.d.ts +8 -2
  80. package/dist/types/walkHighlight.d.ts +2 -0
  81. package/dist/util/SpatialIndex.js +4 -4
  82. package/dist/util/edgeCurves.js +3 -3
  83. package/dist/util/geometry.js +1 -1
  84. package/dist/util/hitDetection.js +5 -5
  85. package/dist/version.js +1 -1
  86. package/dist/viewport.js +6 -6
  87. package/dist/walkEncoding.js +13 -11
  88. package/dist/walkHighlight.js +10 -10
  89. package/dist/walkKey.js +5 -5
  90. package/package.json +1 -1
package/dist/util/SpatialIndex.js CHANGED
@@ -1,13 +1,13 @@
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  import {
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  EdgeSpatialIndex,
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  SpatialIndex
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- } from "../chunks/chunk-7PEYA3NA.js";
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- import "../chunks/chunk-VSRRIFRF.js";
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+ } from "../chunks/chunk-7YSIP3O2.js";
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+ import "../chunks/chunk-P2GJBFNA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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- import "../chunks/chunk-3CXZUC2Y.js";
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+ import "../chunks/chunk-3GORESBG.js";
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  import "../chunks/chunk-TLWXLNLY.js";
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  import "../chunks/chunk-3YBP46PB.js";
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- import "../chunks/chunk-735MPLUL.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
package/dist/util/edgeCurves.js CHANGED
@@ -1,11 +1,11 @@
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  import {
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  baseEdgeCurves
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- } from "../chunks/chunk-VSRRIFRF.js";
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+ } from "../chunks/chunk-P2GJBFNA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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- import "../chunks/chunk-3CXZUC2Y.js";
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+ import "../chunks/chunk-3GORESBG.js";
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  import "../chunks/chunk-TLWXLNLY.js";
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  import "../chunks/chunk-3YBP46PB.js";
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- import "../chunks/chunk-735MPLUL.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
package/dist/util/geometry.js CHANGED
@@ -20,7 +20,7 @@ import {
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  svgPath,
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  translateCurves,
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  yToXOf
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- } from "../chunks/chunk-735MPLUL.js";
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+ } from "../chunks/chunk-JJV2GT2Z.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  export {
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  PATH_RIBBON_SPACING_PX,
package/dist/util/hitDetection.js CHANGED
@@ -4,14 +4,14 @@ import {
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  findHoveredEdge,
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  findHoveredNode,
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  nodesUnderBox
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- } from "../chunks/chunk-NHOXLUIL.js";
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- import "../chunks/chunk-7PEYA3NA.js";
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- import "../chunks/chunk-VSRRIFRF.js";
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+ } from "../chunks/chunk-4JDO7ZLN.js";
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+ import "../chunks/chunk-7YSIP3O2.js";
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+ import "../chunks/chunk-P2GJBFNA.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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- import "../chunks/chunk-3CXZUC2Y.js";
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+ import "../chunks/chunk-3GORESBG.js";
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  import "../chunks/chunk-TLWXLNLY.js";
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  import "../chunks/chunk-3YBP46PB.js";
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- import "../chunks/chunk-735MPLUL.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
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  import {
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  version
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- } from "./chunks/chunk-L2RQV23D.js";
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+ } from "./chunks/chunk-2NCZ5YYN.js";
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  export {
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  version
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  };
package/dist/viewport.js CHANGED
@@ -5,10 +5,10 @@ import {
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  screenToLayout,
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-2RCKHCF7.js";
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- import "./chunks/chunk-S3ICPPXC.js";
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+ } from "./chunks/chunk-3DHGSHC3.js";
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+ import "./chunks/chunk-JVT3XTKN.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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- import "./chunks/chunk-22ZMVREZ.js";
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+ import "./chunks/chunk-NAYS472K.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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  import "./chunks/chunk-TUMJNAOL.js";
@@ -18,13 +18,13 @@ import "./chunks/chunk-7L7MN2OM.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-VSSIYQYF.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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  import "./chunks/chunk-HKYXWZQS.js";
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  import "./chunks/chunk-34BOZKIE.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
package/dist/walkEncoding.js CHANGED
@@ -8,24 +8,25 @@ import {
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  resolveEncoding,
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  schemeColor,
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  schemeCss,
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- schemeRgb
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- } from "./chunks/chunk-N4AJV4GH.js";
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- import "./chunks/chunk-2H3ALI6L.js";
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- import "./chunks/chunk-7GDNDQD7.js";
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+ schemeRgb,
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+ splitFamilies
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+ } from "./chunks/chunk-UVRCXTBY.js";
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+ import "./chunks/chunk-53DZE3SA.js";
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+ import "./chunks/chunk-4KBZ7WPP.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-VSRRIFRF.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-P2GJBFNA.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
@@ -42,5 +43,6 @@ export {
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  resolveEncoding,
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  schemeColor,
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  schemeCss,
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- schemeRgb
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+ schemeRgb,
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+ splitFamilies
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  };
package/dist/walkHighlight.js CHANGED
@@ -2,25 +2,25 @@ import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-YF6T33PU.js";
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- import "./chunks/chunk-N4AJV4GH.js";
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- import "./chunks/chunk-2H3ALI6L.js";
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- import "./chunks/chunk-7GDNDQD7.js";
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+ } from "./chunks/chunk-54C73ICS.js";
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+ import "./chunks/chunk-UVRCXTBY.js";
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+ import "./chunks/chunk-53DZE3SA.js";
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+ import "./chunks/chunk-4KBZ7WPP.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-VSRRIFRF.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-P2GJBFNA.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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package/dist/walkKey.js CHANGED
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- } from "./chunks/chunk-SDDMV2MM.js";
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+ } from "./chunks/chunk-IZKM4NY7.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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package/package.json CHANGED
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  {
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  "name": "@jbrowse/bandage-core",
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- "version": "11.8.0",
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+ "version": "11.10.0",
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  "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
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  "license": "GPL-3.0-or-later",
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  "repository": {