@jbrowse/bandage-core 11.8.0 → 11.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/bubbleHalos.js +6 -6
- package/dist/bubbles/classifyBubble.js +5 -5
- package/dist/bubbles/superbubbles.js +7 -7
- package/dist/chunks/{chunk-S4CH434Z.js → chunk-2A6Z2DHF.js} +1 -1
- package/dist/chunks/{chunk-6MD4VS2F.js → chunk-2MXFG3W7.js} +1 -1
- package/dist/chunks/{chunk-L2RQV23D.js → chunk-2NCZ5YYN.js} +1 -1
- package/dist/chunks/{chunk-ZKIH2USC.js → chunk-337LZP7C.js} +1 -1
- package/dist/chunks/{chunk-2RCKHCF7.js → chunk-3DHGSHC3.js} +1 -1
- package/dist/chunks/{chunk-3CXZUC2Y.js → chunk-3GORESBG.js} +1 -1
- package/dist/chunks/{chunk-R4XCTRIU.js → chunk-4BYGFDQB.js} +1 -1
- package/dist/chunks/{chunk-NHOXLUIL.js → chunk-4JDO7ZLN.js} +2 -2
- package/dist/chunks/{chunk-7GDNDQD7.js → chunk-4KBZ7WPP.js} +176 -101
- package/dist/chunks/{chunk-2H3ALI6L.js → chunk-53DZE3SA.js} +184 -161
- package/dist/chunks/{chunk-YF6T33PU.js → chunk-54C73ICS.js} +37 -17
- package/dist/chunks/{chunk-U6JPSXJ3.js → chunk-55DRWHBF.js} +9 -9
- package/dist/chunks/{chunk-4OVIUCSB.js → chunk-77O67GIB.js} +1 -1
- package/dist/chunks/{chunk-7PEYA3NA.js → chunk-7YSIP3O2.js} +2 -2
- package/dist/chunks/{chunk-LA6JHEVV.js → chunk-ALOF5SOT.js} +1 -1
- package/dist/chunks/{chunk-3XYLEK4H.js → chunk-ARXDNQLF.js} +1 -1
- package/dist/chunks/{chunk-6CXLLJ2C.js → chunk-AURNOR27.js} +3 -3
- package/dist/chunks/{chunk-G4WQBRDS.js → chunk-BDS5VZYZ.js} +3 -3
- package/dist/chunks/{chunk-MO4DIRHD.js → chunk-CHGTUO3C.js} +13 -13
- package/dist/chunks/{chunk-X5ULFAMM.js → chunk-HEYIAMTC.js} +2 -2
- package/dist/chunks/{chunk-S7BCZVRK.js → chunk-HIN56TLA.js} +1 -1
- package/dist/chunks/{chunk-YIWN32ZX.js → chunk-HNNP5QUN.js} +1 -1
- package/dist/chunks/{chunk-XOIYBEU7.js → chunk-I53QYITQ.js} +1 -1
- package/dist/chunks/{chunk-SDDMV2MM.js → chunk-IZKM4NY7.js} +1 -1
- package/dist/chunks/{chunk-SIXFXXRI.js → chunk-J7RNXBXA.js} +3 -3
- package/dist/chunks/{chunk-735MPLUL.js → chunk-JJV2GT2Z.js} +22 -14
- package/dist/chunks/{chunk-S3ICPPXC.js → chunk-JVT3XTKN.js} +3 -3
- package/dist/chunks/{chunk-J4PDHWP2.js → chunk-KKHXMJEE.js} +1 -1
- package/dist/chunks/{chunk-22ZMVREZ.js → chunk-NAYS472K.js} +1 -1
- package/dist/chunks/{chunk-OIOAK7BS.js → chunk-NWEVR2OQ.js} +1 -1
- package/dist/chunks/{chunk-VSRRIFRF.js → chunk-P2GJBFNA.js} +1 -1
- package/dist/chunks/{chunk-N2GAA7RB.js → chunk-RT4U3DH3.js} +1 -1
- package/dist/chunks/{chunk-AXE3RR7J.js → chunk-S6E3PMH7.js} +1 -1
- package/dist/chunks/{chunk-NQWEYJDD.js → chunk-SPEB75UH.js} +1 -1
- package/dist/chunks/{chunk-4YPCUVMC.js → chunk-SZYFZNCO.js} +2 -2
- package/dist/chunks/{chunk-G3GLGDKV.js → chunk-TQ26XEFL.js} +2 -2
- package/dist/chunks/{chunk-N4AJV4GH.js → chunk-UVRCXTBY.js} +37 -10
- package/dist/chunks/{chunk-YEDZ37PH.js → chunk-VNCHWWLG.js} +1 -1
- package/dist/chunks/{chunk-JKIAHYAW.js → chunk-VQ353UDK.js} +1 -1
- package/dist/chunks/{chunk-R3NPBUKT.js → chunk-YQAZNH37.js} +7 -7
- package/dist/cli/figure.js +28 -28
- package/dist/cli/fold.js +6 -6
- package/dist/deletionEdges.js +2 -2
- package/dist/figure.js +24 -24
- package/dist/figureData.js +22 -22
- package/dist/figureScene.js +15 -15
- package/dist/figureSettings.js +6 -6
- package/dist/foldVariants.js +2 -2
- package/dist/genes/genePins.js +3 -3
- package/dist/graphLabels.js +4 -4
- package/dist/index.js +38 -38
- package/dist/labelLayout.js +8 -8
- package/dist/layout/forceCache.js +6 -6
- package/dist/layout/mergeRuns.js +2 -2
- package/dist/layout/orientToReference.js +2 -2
- package/dist/layout/tubeMapLayout.js +7 -7
- package/dist/layout/walkRowDraw.js +9 -9
- package/dist/layout/walkStrip.js +10 -10
- package/dist/layoutModes.js +8 -8
- package/dist/pathColors.js +5 -5
- package/dist/pipeline.js +5 -5
- package/dist/referenceStrip.js +9 -9
- package/dist/renderer/GeometryBuilder.js +8 -8
- package/dist/renderer/walkLanes.js +4 -2
- package/dist/tubeMap/axis.js +5 -5
- package/dist/tubeMap/bundle.js +8 -8
- package/dist/tubeMap/coarsen.js +8 -8
- package/dist/tubeMap/deviations.js +9 -9
- package/dist/tubeMap/draw.js +3 -3
- package/dist/tubeMap/genes.js +6 -6
- package/dist/tubeMap/nodeColors.js +9 -9
- package/dist/tubeMap/reads.js +2 -2
- package/dist/types/renderer/walkLanes.d.ts +19 -2
- package/dist/types/util/geometry.d.ts +1 -1
- package/dist/types/version.d.ts +1 -1
- package/dist/types/walkEncoding.d.ts +8 -2
- package/dist/types/walkHighlight.d.ts +2 -0
- package/dist/util/SpatialIndex.js +4 -4
- package/dist/util/edgeCurves.js +3 -3
- package/dist/util/geometry.js +1 -1
- package/dist/util/hitDetection.js +5 -5
- package/dist/version.js +1 -1
- package/dist/viewport.js +6 -6
- package/dist/walkEncoding.js +13 -11
- package/dist/walkHighlight.js +10 -10
- package/dist/walkKey.js +5 -5
- package/package.json +1 -1
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var NO_VALUE_COLOR = REFERENCE_RAMP_ALT_COLOR;
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function encodingStops(encoding) {
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offset,
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return field === "walk" ? [stop(0, shade)] : Array.from({ length: 7 }, (_, i) => stop(i / 6, i / 6));
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function encodingSwatchCss(encoding) {
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|
|
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WALK_FIELDS,
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WALK_SCHEMES,
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resolveEncoding,
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splitFamilies,
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|
schemeRgb,
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schemeCss,
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|
schemeColor,
|
|
@@ -4,27 +4,27 @@ import {
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import {
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facetLifts,
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|
walkLift
|
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|
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} from "./chunk-
|
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|
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} from "./chunk-54C73ICS.js";
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import {
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buildGeometry,
|
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computeReferenceRamp
|
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} from "./chunk-
|
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|
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} from "./chunk-53DZE3SA.js";
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walkKey
|
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} from "./chunk-
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} from "./chunk-IZKM4NY7.js";
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import {
|
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walkRowsExtent
|
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} from "./chunk-VCUOYVLC.js";
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import {
|
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|
pathLegend,
|
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|
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} from "./chunk-
|
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} from "./chunk-VQ353UDK.js";
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import {
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} from "./chunk-
|
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} from "./chunk-2MXFG3W7.js";
|
|
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|
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|
drawingBounds
|
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} from "./chunk-
|
|
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|
+
} from "./chunk-JVT3XTKN.js";
|
|
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|
|
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|
referenceLabel
|
|
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|
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|
|
@@ -34,7 +34,7 @@ import {
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import {
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deletionDrawing,
|
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|
deletionEdges
|
|
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} from "./chunk-
|
|
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} from "./chunk-3GORESBG.js";
|
|
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|
import {
|
|
39
39
|
facetCells,
|
|
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|
facetSettingOf
|
package/dist/cli/figure.js
CHANGED
|
@@ -8,33 +8,33 @@ import {
|
|
|
8
8
|
import "../chunks/chunk-EQDQ7P4Y.js";
|
|
9
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|
import {
|
|
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|
figureSvg
|
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} from "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
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|
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} from "../chunks/chunk-CHGTUO3C.js";
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|
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|
|
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|
import {
|
|
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17
|
genesOnRow,
|
|
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18
|
placeRowGenes
|
|
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|
-
} from "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-ALOF5SOT.js";
|
|
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|
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|
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|
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|
|
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|
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import "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
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|
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|
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|
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|
|
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|
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|
|
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|
walkLayers
|
|
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|
-
} from "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-55DRWHBF.js";
|
|
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|
import {
|
|
30
30
|
LAYOUT_ENGINE_VALUES,
|
|
31
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|
isLayoutEngineKind
|
|
32
32
|
} from "../chunks/chunk-CO6RGQAD.js";
|
|
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|
import {
|
|
34
34
|
LAYOUT_MODES
|
|
35
|
-
} from "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
|
37
|
-
import "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-ARXDNQLF.js";
|
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|
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|
|
@@ -50,31 +50,31 @@ import {
|
|
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} from "../chunks/chunk-FNDNSDKW.js";
|
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|
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|
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import "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
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|
+
import "../chunks/chunk-HEYIAMTC.js";
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|
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import "../chunks/chunk-2NCZ5YYN.js";
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|
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import "../chunks/chunk-YQAZNH37.js";
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|
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|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
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|
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import "../chunks/chunk-
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|
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|
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import "../chunks/chunk-
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|
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|
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|
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|
|
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|
import {
|
|
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|
filterSamples,
|
|
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|
walkRows
|
|
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|
} from "../chunks/chunk-C3KAPREU.js";
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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import "../chunks/chunk-
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|
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|
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|
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|
|
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|
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|
|
@@ -85,17 +85,17 @@ import "../chunks/chunk-VX656OAZ.js";
|
|
|
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85
|
import "../chunks/chunk-5ORP7EFJ.js";
|
|
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|
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|
|
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|
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|
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-AURNOR27.js";
|
|
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|
import "../chunks/chunk-HMXCN6PG.js";
|
|
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|
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|
|
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|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-HNNP5QUN.js";
|
|
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|
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|
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|
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|
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|
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|
|
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|
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import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-3GORESBG.js";
|
|
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|
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|
|
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|
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|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-JJV2GT2Z.js";
|
|
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|
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|
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|
|
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|
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|