@jbrowse/bandage-core 11.7.3 → 11.8.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +59 -19
- package/dist/bubbles/bubbleHalos.js +6 -6
- package/dist/bubbles/classifyBubble.js +5 -5
- package/dist/bubbles/superbubbles.js +7 -7
- package/dist/chunks/{chunk-ZZZ6NVLW.js → chunk-22ZMVREZ.js} +1 -1
- package/dist/chunks/{chunk-VXKL2ZLR.js → chunk-2H3ALI6L.js} +223 -45
- package/dist/chunks/{chunk-F4CDC72I.js → chunk-2RCKHCF7.js} +1 -1
- package/dist/chunks/{chunk-P276TWPM.js → chunk-3CXZUC2Y.js} +1 -1
- package/dist/chunks/{chunk-VNF236GG.js → chunk-3XYLEK4H.js} +2 -2
- package/dist/chunks/{chunk-PKGPSTRW.js → chunk-4OVIUCSB.js} +2 -2
- package/dist/chunks/{chunk-BLDUBB7X.js → chunk-4YPCUVMC.js} +2 -2
- package/dist/chunks/{chunk-N73RA4DR.js → chunk-6CXLLJ2C.js} +3 -3
- package/dist/chunks/{chunk-4SN7R4UF.js → chunk-6MD4VS2F.js} +1 -1
- package/dist/chunks/{chunk-VACK24HF.js → chunk-735MPLUL.js} +35 -9
- package/dist/chunks/chunk-7GDNDQD7.js +504 -0
- package/dist/chunks/{chunk-2US43KNG.js → chunk-7PEYA3NA.js} +2 -2
- package/dist/chunks/{chunk-XTCIKBWM.js → chunk-AXE3RR7J.js} +1 -1
- package/dist/chunks/{chunk-BXE3SBBN.js → chunk-C3KAPREU.js} +1 -1
- package/dist/chunks/{chunk-QJC63NFR.js → chunk-G3GLGDKV.js} +2 -2
- package/dist/chunks/{chunk-63XWYNID.js → chunk-G4WQBRDS.js} +4 -4
- package/dist/chunks/{chunk-SDI6BVG7.js → chunk-J4PDHWP2.js} +1 -1
- package/dist/chunks/{chunk-GD6RUZU5.js → chunk-JKIAHYAW.js} +14 -8
- package/dist/chunks/{chunk-AJQRKN3X.js → chunk-L2RQV23D.js} +1 -1
- package/dist/chunks/{chunk-EPOPGV5G.js → chunk-LA6JHEVV.js} +1 -1
- package/dist/chunks/{chunk-G7SG4XMK.js → chunk-LODKC7PJ.js} +7 -0
- package/dist/chunks/{chunk-QXBQDHKL.js → chunk-MO4DIRHD.js} +80 -38
- package/dist/chunks/{chunk-IHM43Y7B.js → chunk-N2GAA7RB.js} +1 -1
- package/dist/chunks/{chunk-6RB5ZQ34.js → chunk-N4AJV4GH.js} +25 -14
- package/dist/chunks/{chunk-LH436HS2.js → chunk-NHOXLUIL.js} +2 -2
- package/dist/chunks/{chunk-QLLKALSH.js → chunk-NQWEYJDD.js} +1 -1
- package/dist/chunks/{chunk-AWJJSA7D.js → chunk-OIOAK7BS.js} +1 -1
- package/dist/chunks/{chunk-UTDMFVC7.js → chunk-R3NPBUKT.js} +8 -8
- package/dist/chunks/{chunk-4KOYS5WR.js → chunk-R4XCTRIU.js} +1 -1
- package/dist/chunks/{chunk-XKPXOIWD.js → chunk-S3ICPPXC.js} +3 -3
- package/dist/chunks/{chunk-K4KVAMEF.js → chunk-S4CH434Z.js} +1 -1
- package/dist/chunks/{chunk-HMEAGAGC.js → chunk-S7BCZVRK.js} +2 -2
- package/dist/chunks/{chunk-SG7VQB4F.js → chunk-SDDMV2MM.js} +1 -1
- package/dist/chunks/{chunk-KMLATBNT.js → chunk-SIXFXXRI.js} +3 -3
- package/dist/chunks/{chunk-T3MEG5D3.js → chunk-U6JPSXJ3.js} +90 -21
- package/dist/chunks/{chunk-SENPGW4O.js → chunk-VCUOYVLC.js} +1 -1
- package/dist/chunks/{chunk-33KUO34R.js → chunk-VSRRIFRF.js} +1 -1
- package/dist/chunks/{chunk-BFUS3ENH.js → chunk-X5ULFAMM.js} +2 -2
- package/dist/chunks/{chunk-W5YRBEWQ.js → chunk-XOIYBEU7.js} +1 -1
- package/dist/chunks/{chunk-CL6ELLVF.js → chunk-YEDZ37PH.js} +1 -1
- package/dist/chunks/{chunk-Z4HXW6ZH.js → chunk-YF6T33PU.js} +10 -2
- package/dist/chunks/{chunk-2VMKQKVO.js → chunk-YIWN32ZX.js} +1 -1
- package/dist/chunks/{chunk-2T3V6Z3M.js → chunk-ZKIH2USC.js} +1 -1
- package/dist/cli/figure.js +31 -30
- package/dist/cli/fold.js +6 -6
- package/dist/deletionEdges.js +2 -2
- package/dist/figure.js +27 -26
- package/dist/figureData.js +25 -24
- package/dist/figureScene.js +18 -17
- package/dist/figureSettings.js +6 -6
- package/dist/foldVariants.js +2 -2
- package/dist/genes/genePins.js +3 -3
- package/dist/graphLabels.js +4 -4
- package/dist/index.js +45 -44
- package/dist/labelLayout.js +8 -8
- package/dist/layout/forceCache.js +6 -6
- package/dist/layout/mergeRuns.js +2 -2
- package/dist/layout/orientToReference.js +2 -2
- package/dist/layout/tubeMapLayout.js +9 -9
- package/dist/layout/walkRowDraw.js +9 -8
- package/dist/layout/walkRowLayout.js +3 -3
- package/dist/layout/walkRowRuns.js +1 -1
- package/dist/layout/walkRows.js +2 -2
- package/dist/layout/walkStrip.js +13 -12
- package/dist/layoutModes.js +11 -11
- package/dist/pathColors.js +5 -5
- package/dist/pipeline.js +5 -5
- package/dist/referenceStrip.js +9 -8
- package/dist/renderer/GeometryBuilder.js +8 -7
- package/dist/renderer/walkLanes.js +44 -0
- package/dist/tubeMap/axis.js +5 -5
- package/dist/tubeMap/bundle.js +10 -10
- package/dist/tubeMap/coarsen.js +10 -10
- package/dist/tubeMap/deviations.js +11 -11
- package/dist/tubeMap/draw.js +5 -5
- package/dist/tubeMap/genes.js +6 -6
- package/dist/tubeMap/nodeColors.js +9 -8
- package/dist/tubeMap/reads.js +2 -2
- package/dist/types/figureData.d.ts +22 -0
- package/dist/types/renderer/types.d.ts +20 -0
- package/dist/types/renderer/walkLanes.d.ts +60 -0
- package/dist/types/util/geometry.d.ts +13 -1
- package/dist/types/version.d.ts +1 -1
- package/dist/types/walkEncoding.d.ts +7 -5
- package/dist/types/walkHighlight.d.ts +3 -0
- package/dist/util/SpatialIndex.js +4 -4
- package/dist/util/edgeCurves.js +3 -3
- package/dist/util/geometry.js +7 -1
- package/dist/util/hitDetection.js +5 -5
- package/dist/version.js +1 -1
- package/dist/viewport.js +6 -6
- package/dist/walkEncoding.js +9 -8
- package/dist/walkHighlight.js +10 -9
- package/dist/walkKey.js +5 -5
- package/package.json +1 -1
package/dist/figureScene.js
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package/dist/figureSettings.js
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package/dist/foldVariants.js
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rampStops
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|
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} from "./chunks/chunk-
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} from "./chunks/chunk-6MD4VS2F.js";
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FIT_PADDING,
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|
layoutExtent,
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loadGraph
|
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} from "./chunks/chunk-
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} from "./chunks/chunk-S3ICPPXC.js";
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|
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} from "./chunks/chunk-6CXLLJ2C.js";
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import {
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|
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340
|
LABEL_PAD,
|
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|
LABEL_PX
|
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|
} from "./chunks/chunk-AB35TJST.js";
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import "./chunks/chunk-
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|
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|
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|
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345
|
BUBBLE_SPREADS
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346
|
} from "./chunks/chunk-HKYXWZQS.js";
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|
@@ -351,10 +352,10 @@ import {
|
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import {
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353
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|
deletionEdges
|
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} from "./chunks/chunk-
|
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+
} from "./chunks/chunk-3CXZUC2Y.js";
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|
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360
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|
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|
package/dist/labelLayout.js
CHANGED
|
@@ -4,18 +4,18 @@ import {
|
|
|
4
4
|
geneCoverageNote,
|
|
5
5
|
geneLabelCandidates,
|
|
6
6
|
layoutLabels
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-G3GLGDKV.js";
|
|
8
|
+
import "./chunks/chunk-NHOXLUIL.js";
|
|
9
|
+
import "./chunks/chunk-7PEYA3NA.js";
|
|
10
|
+
import "./chunks/chunk-VSRRIFRF.js";
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|
+
import "./chunks/chunk-6CXLLJ2C.js";
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12
|
import "./chunks/chunk-HMXCN6PG.js";
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13
|
import "./chunks/chunk-AB35TJST.js";
|
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|
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import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-
|
|
14
|
+
import "./chunks/chunk-YIWN32ZX.js";
|
|
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|
+
import "./chunks/chunk-3CXZUC2Y.js";
|
|
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16
|
import "./chunks/chunk-TLWXLNLY.js";
|
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17
|
import "./chunks/chunk-3YBP46PB.js";
|
|
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|
-
import "./chunks/chunk-
|
|
18
|
+
import "./chunks/chunk-735MPLUL.js";
|
|
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19
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
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20
|
import "./chunks/chunk-ZPZ7GNBT.js";
|
|
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21
|
import "./chunks/chunk-BSOZW3FC.js";
|
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
import {
|
|
2
2
|
createForceLayoutCache
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-S4CH434Z.js";
|
|
4
|
+
import "../chunks/chunk-S3ICPPXC.js";
|
|
5
5
|
import "../chunks/chunk-OPPVSPEF.js";
|
|
6
|
-
import "../chunks/chunk-
|
|
6
|
+
import "../chunks/chunk-22ZMVREZ.js";
|
|
7
7
|
import "../chunks/chunk-CKUVEHSS.js";
|
|
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8
|
import "../chunks/chunk-VPE4AYP7.js";
|
|
9
9
|
import "../chunks/chunk-TUMJNAOL.js";
|
|
@@ -13,13 +13,13 @@ import "../chunks/chunk-7L7MN2OM.js";
|
|
|
13
13
|
import "../chunks/chunk-VX656OAZ.js";
|
|
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14
|
import "../chunks/chunk-VSSIYQYF.js";
|
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|
import "../chunks/chunk-LG2UK4MB.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-YIWN32ZX.js";
|
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17
|
import "../chunks/chunk-HKYXWZQS.js";
|
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18
|
import "../chunks/chunk-34BOZKIE.js";
|
|
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|
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import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-3CXZUC2Y.js";
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|
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import "../chunks/chunk-
|
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|
+
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23
|
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|
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|
package/dist/layout/mergeRuns.js
CHANGED
|
@@ -3,8 +3,8 @@ import {
|
|
|
3
3
|
polylineMidpoint,
|
|
4
4
|
polylineSlice,
|
|
5
5
|
splitRuns
|
|
6
|
-
} from "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
6
|
+
} from "../chunks/chunk-YIWN32ZX.js";
|
|
7
|
+
import "../chunks/chunk-735MPLUL.js";
|
|
8
8
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
9
9
|
import "../chunks/chunk-BSOZW3FC.js";
|
|
10
10
|
import "../chunks/chunk-RJWPJCIB.js";
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import {
|
|
2
2
|
orientToReference
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-22ZMVREZ.js";
|
|
4
|
+
import "../chunks/chunk-735MPLUL.js";
|
|
5
5
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
6
6
|
import "../chunks/chunk-RJWPJCIB.js";
|
|
7
7
|
import "../chunks/chunk-HOAIOEI7.js";
|
|
@@ -5,22 +5,22 @@ import {
|
|
|
5
5
|
tubeMapLayout,
|
|
6
6
|
tubeMapReferenceLayout,
|
|
7
7
|
tubeMapTracks
|
|
8
|
-
} from "../chunks/chunk-
|
|
9
|
-
import "../chunks/chunk-
|
|
8
|
+
} from "../chunks/chunk-G4WQBRDS.js";
|
|
9
|
+
import "../chunks/chunk-J4PDHWP2.js";
|
|
10
10
|
import "../chunks/chunk-5OJZV6YT.js";
|
|
11
|
-
import "../chunks/chunk-
|
|
12
|
-
import "../chunks/chunk-
|
|
13
|
-
import "../chunks/chunk-
|
|
11
|
+
import "../chunks/chunk-C3KAPREU.js";
|
|
12
|
+
import "../chunks/chunk-LODKC7PJ.js";
|
|
13
|
+
import "../chunks/chunk-JKIAHYAW.js";
|
|
14
14
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
15
15
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
16
|
+
import "../chunks/chunk-6CXLLJ2C.js";
|
|
17
17
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
18
18
|
import "../chunks/chunk-AB35TJST.js";
|
|
19
|
-
import "../chunks/chunk-
|
|
20
|
-
import "../chunks/chunk-
|
|
19
|
+
import "../chunks/chunk-YIWN32ZX.js";
|
|
20
|
+
import "../chunks/chunk-3CXZUC2Y.js";
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import "../chunks/chunk-TLWXLNLY.js";
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import "../chunks/chunk-3YBP46PB.js";
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import "../chunks/chunk-
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import "../chunks/chunk-735MPLUL.js";
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import "../chunks/chunk-CPMHA4W5.js";
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import "../chunks/chunk-ZPZ7GNBT.js";
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import "../chunks/chunk-BSOZW3FC.js";
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|
@@ -30,24 +30,25 @@ import {
|
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30
|
walkRowsKey,
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walkRowsKeyTree,
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walkRowsTree
|
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-
} from "../chunks/chunk-
|
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+
} from "../chunks/chunk-LA6JHEVV.js";
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import "../chunks/chunk-H2H4Y3TV.js";
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-
import "../chunks/chunk-
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import "../chunks/chunk-2H3ALI6L.js";
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import "../chunks/chunk-7GDNDQD7.js";
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import "../chunks/chunk-G2FD7S3C.js";
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import "../chunks/chunk-GQZVR5DW.js";
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-
import "../chunks/chunk-
|
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-
import "../chunks/chunk-
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+
import "../chunks/chunk-VSRRIFRF.js";
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+
import "../chunks/chunk-JKIAHYAW.js";
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import "../chunks/chunk-ZANALBSX.js";
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import "../chunks/chunk-VX656OAZ.js";
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import "../chunks/chunk-LG2UK4MB.js";
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-
import "../chunks/chunk-
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+
import "../chunks/chunk-6CXLLJ2C.js";
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import "../chunks/chunk-HMXCN6PG.js";
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import "../chunks/chunk-AB35TJST.js";
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-
import "../chunks/chunk-
|
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-
import "../chunks/chunk-
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+
import "../chunks/chunk-YIWN32ZX.js";
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+
import "../chunks/chunk-3CXZUC2Y.js";
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import "../chunks/chunk-TLWXLNLY.js";
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import "../chunks/chunk-3YBP46PB.js";
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-
import "../chunks/chunk-
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+
import "../chunks/chunk-735MPLUL.js";
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|
import "../chunks/chunk-CPMHA4W5.js";
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|
import "../chunks/chunk-ZPZ7GNBT.js";
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|
import "../chunks/chunk-BSOZW3FC.js";
|
|
@@ -5,9 +5,9 @@ import {
|
|
|
5
5
|
walkRowLayout,
|
|
6
6
|
walkRowLayoutOf,
|
|
7
7
|
walkRowsExtent
|
|
8
|
-
} from "../chunks/chunk-
|
|
9
|
-
import "../chunks/chunk-
|
|
10
|
-
import "../chunks/chunk-
|
|
8
|
+
} from "../chunks/chunk-VCUOYVLC.js";
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9
|
+
import "../chunks/chunk-C3KAPREU.js";
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10
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+
import "../chunks/chunk-LODKC7PJ.js";
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import "../chunks/chunk-7L7MN2OM.js";
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import "../chunks/chunk-LG2UK4MB.js";
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import "../chunks/chunk-3YBP46PB.js";
|
package/dist/layout/walkRows.js
CHANGED
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import {
|
|
2
2
|
filterSamples,
|
|
3
3
|
walkRows
|
|
4
|
-
} from "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-C3KAPREU.js";
|
|
5
5
|
import {
|
|
6
6
|
referenceWalkName
|
|
7
|
-
} from "../chunks/chunk-
|
|
7
|
+
} from "../chunks/chunk-LODKC7PJ.js";
|
|
8
8
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
9
9
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
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10
|
import "../chunks/chunk-3YBP46PB.js";
|
package/dist/layout/walkStrip.js
CHANGED
|
@@ -9,31 +9,32 @@ import {
|
|
|
9
9
|
walkStripApplies,
|
|
10
10
|
walkStripFrame,
|
|
11
11
|
walkStripLabelsTree
|
|
12
|
-
} from "../chunks/chunk-
|
|
12
|
+
} from "../chunks/chunk-4OVIUCSB.js";
|
|
13
13
|
import {
|
|
14
14
|
LABELLED_ROW_PX
|
|
15
|
-
} from "../chunks/chunk-
|
|
15
|
+
} from "../chunks/chunk-LA6JHEVV.js";
|
|
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16
|
import "../chunks/chunk-H2H4Y3TV.js";
|
|
17
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-2H3ALI6L.js";
|
|
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|
+
import "../chunks/chunk-7GDNDQD7.js";
|
|
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19
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
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20
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
20
|
-
import "../chunks/chunk-
|
|
21
|
-
import "../chunks/chunk-
|
|
22
|
-
import "../chunks/chunk-
|
|
23
|
-
import "../chunks/chunk-
|
|
24
|
-
import "../chunks/chunk-
|
|
21
|
+
import "../chunks/chunk-VSRRIFRF.js";
|
|
22
|
+
import "../chunks/chunk-VCUOYVLC.js";
|
|
23
|
+
import "../chunks/chunk-C3KAPREU.js";
|
|
24
|
+
import "../chunks/chunk-LODKC7PJ.js";
|
|
25
|
+
import "../chunks/chunk-JKIAHYAW.js";
|
|
25
26
|
import "../chunks/chunk-ZANALBSX.js";
|
|
26
27
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
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28
|
import "../chunks/chunk-VX656OAZ.js";
|
|
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29
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
29
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-6CXLLJ2C.js";
|
|
30
31
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
31
32
|
import "../chunks/chunk-AB35TJST.js";
|
|
32
|
-
import "../chunks/chunk-
|
|
33
|
-
import "../chunks/chunk-
|
|
33
|
+
import "../chunks/chunk-YIWN32ZX.js";
|
|
34
|
+
import "../chunks/chunk-3CXZUC2Y.js";
|
|
34
35
|
import "../chunks/chunk-TLWXLNLY.js";
|
|
35
36
|
import "../chunks/chunk-3YBP46PB.js";
|
|
36
|
-
import "../chunks/chunk-
|
|
37
|
+
import "../chunks/chunk-735MPLUL.js";
|
|
37
38
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
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39
|
import "../chunks/chunk-ZPZ7GNBT.js";
|
|
39
40
|
import "../chunks/chunk-BSOZW3FC.js";
|