@jbrowse/bandage-core 11.7.3 → 11.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/README.md +59 -19
  2. package/dist/bubbles/bubbleHalos.js +6 -6
  3. package/dist/bubbles/classifyBubble.js +5 -5
  4. package/dist/bubbles/superbubbles.js +7 -7
  5. package/dist/chunks/{chunk-ZZZ6NVLW.js → chunk-22ZMVREZ.js} +1 -1
  6. package/dist/chunks/{chunk-VXKL2ZLR.js → chunk-2H3ALI6L.js} +223 -45
  7. package/dist/chunks/{chunk-F4CDC72I.js → chunk-2RCKHCF7.js} +1 -1
  8. package/dist/chunks/{chunk-P276TWPM.js → chunk-3CXZUC2Y.js} +1 -1
  9. package/dist/chunks/{chunk-VNF236GG.js → chunk-3XYLEK4H.js} +2 -2
  10. package/dist/chunks/{chunk-PKGPSTRW.js → chunk-4OVIUCSB.js} +2 -2
  11. package/dist/chunks/{chunk-BLDUBB7X.js → chunk-4YPCUVMC.js} +2 -2
  12. package/dist/chunks/{chunk-N73RA4DR.js → chunk-6CXLLJ2C.js} +3 -3
  13. package/dist/chunks/{chunk-4SN7R4UF.js → chunk-6MD4VS2F.js} +1 -1
  14. package/dist/chunks/{chunk-VACK24HF.js → chunk-735MPLUL.js} +35 -9
  15. package/dist/chunks/chunk-7GDNDQD7.js +504 -0
  16. package/dist/chunks/{chunk-2US43KNG.js → chunk-7PEYA3NA.js} +2 -2
  17. package/dist/chunks/{chunk-XTCIKBWM.js → chunk-AXE3RR7J.js} +1 -1
  18. package/dist/chunks/{chunk-BXE3SBBN.js → chunk-C3KAPREU.js} +1 -1
  19. package/dist/chunks/{chunk-QJC63NFR.js → chunk-G3GLGDKV.js} +2 -2
  20. package/dist/chunks/{chunk-63XWYNID.js → chunk-G4WQBRDS.js} +4 -4
  21. package/dist/chunks/{chunk-SDI6BVG7.js → chunk-J4PDHWP2.js} +1 -1
  22. package/dist/chunks/{chunk-GD6RUZU5.js → chunk-JKIAHYAW.js} +14 -8
  23. package/dist/chunks/{chunk-AJQRKN3X.js → chunk-L2RQV23D.js} +1 -1
  24. package/dist/chunks/{chunk-EPOPGV5G.js → chunk-LA6JHEVV.js} +1 -1
  25. package/dist/chunks/{chunk-G7SG4XMK.js → chunk-LODKC7PJ.js} +7 -0
  26. package/dist/chunks/{chunk-QXBQDHKL.js → chunk-MO4DIRHD.js} +80 -38
  27. package/dist/chunks/{chunk-IHM43Y7B.js → chunk-N2GAA7RB.js} +1 -1
  28. package/dist/chunks/{chunk-6RB5ZQ34.js → chunk-N4AJV4GH.js} +25 -14
  29. package/dist/chunks/{chunk-LH436HS2.js → chunk-NHOXLUIL.js} +2 -2
  30. package/dist/chunks/{chunk-QLLKALSH.js → chunk-NQWEYJDD.js} +1 -1
  31. package/dist/chunks/{chunk-AWJJSA7D.js → chunk-OIOAK7BS.js} +1 -1
  32. package/dist/chunks/{chunk-UTDMFVC7.js → chunk-R3NPBUKT.js} +8 -8
  33. package/dist/chunks/{chunk-4KOYS5WR.js → chunk-R4XCTRIU.js} +1 -1
  34. package/dist/chunks/{chunk-XKPXOIWD.js → chunk-S3ICPPXC.js} +3 -3
  35. package/dist/chunks/{chunk-K4KVAMEF.js → chunk-S4CH434Z.js} +1 -1
  36. package/dist/chunks/{chunk-HMEAGAGC.js → chunk-S7BCZVRK.js} +2 -2
  37. package/dist/chunks/{chunk-SG7VQB4F.js → chunk-SDDMV2MM.js} +1 -1
  38. package/dist/chunks/{chunk-KMLATBNT.js → chunk-SIXFXXRI.js} +3 -3
  39. package/dist/chunks/{chunk-T3MEG5D3.js → chunk-U6JPSXJ3.js} +90 -21
  40. package/dist/chunks/{chunk-SENPGW4O.js → chunk-VCUOYVLC.js} +1 -1
  41. package/dist/chunks/{chunk-33KUO34R.js → chunk-VSRRIFRF.js} +1 -1
  42. package/dist/chunks/{chunk-BFUS3ENH.js → chunk-X5ULFAMM.js} +2 -2
  43. package/dist/chunks/{chunk-W5YRBEWQ.js → chunk-XOIYBEU7.js} +1 -1
  44. package/dist/chunks/{chunk-CL6ELLVF.js → chunk-YEDZ37PH.js} +1 -1
  45. package/dist/chunks/{chunk-Z4HXW6ZH.js → chunk-YF6T33PU.js} +10 -2
  46. package/dist/chunks/{chunk-2VMKQKVO.js → chunk-YIWN32ZX.js} +1 -1
  47. package/dist/chunks/{chunk-2T3V6Z3M.js → chunk-ZKIH2USC.js} +1 -1
  48. package/dist/cli/figure.js +31 -30
  49. package/dist/cli/fold.js +6 -6
  50. package/dist/deletionEdges.js +2 -2
  51. package/dist/figure.js +27 -26
  52. package/dist/figureData.js +25 -24
  53. package/dist/figureScene.js +18 -17
  54. package/dist/figureSettings.js +6 -6
  55. package/dist/foldVariants.js +2 -2
  56. package/dist/genes/genePins.js +3 -3
  57. package/dist/graphLabels.js +4 -4
  58. package/dist/index.js +45 -44
  59. package/dist/labelLayout.js +8 -8
  60. package/dist/layout/forceCache.js +6 -6
  61. package/dist/layout/mergeRuns.js +2 -2
  62. package/dist/layout/orientToReference.js +2 -2
  63. package/dist/layout/tubeMapLayout.js +9 -9
  64. package/dist/layout/walkRowDraw.js +9 -8
  65. package/dist/layout/walkRowLayout.js +3 -3
  66. package/dist/layout/walkRowRuns.js +1 -1
  67. package/dist/layout/walkRows.js +2 -2
  68. package/dist/layout/walkStrip.js +13 -12
  69. package/dist/layoutModes.js +11 -11
  70. package/dist/pathColors.js +5 -5
  71. package/dist/pipeline.js +5 -5
  72. package/dist/referenceStrip.js +9 -8
  73. package/dist/renderer/GeometryBuilder.js +8 -7
  74. package/dist/renderer/walkLanes.js +44 -0
  75. package/dist/tubeMap/axis.js +5 -5
  76. package/dist/tubeMap/bundle.js +10 -10
  77. package/dist/tubeMap/coarsen.js +10 -10
  78. package/dist/tubeMap/deviations.js +11 -11
  79. package/dist/tubeMap/draw.js +5 -5
  80. package/dist/tubeMap/genes.js +6 -6
  81. package/dist/tubeMap/nodeColors.js +9 -8
  82. package/dist/tubeMap/reads.js +2 -2
  83. package/dist/types/figureData.d.ts +22 -0
  84. package/dist/types/renderer/types.d.ts +20 -0
  85. package/dist/types/renderer/walkLanes.d.ts +60 -0
  86. package/dist/types/util/geometry.d.ts +13 -1
  87. package/dist/types/version.d.ts +1 -1
  88. package/dist/types/walkEncoding.d.ts +7 -5
  89. package/dist/types/walkHighlight.d.ts +3 -0
  90. package/dist/util/SpatialIndex.js +4 -4
  91. package/dist/util/edgeCurves.js +3 -3
  92. package/dist/util/geometry.js +7 -1
  93. package/dist/util/hitDetection.js +5 -5
  94. package/dist/version.js +1 -1
  95. package/dist/viewport.js +6 -6
  96. package/dist/walkEncoding.js +9 -8
  97. package/dist/walkHighlight.js +10 -9
  98. package/dist/walkKey.js +5 -5
  99. package/package.json +1 -1
@@ -3,25 +3,30 @@ import {
3
3
  } from "./chunk-CO6RGQAD.js";
4
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  import {
5
5
  layoutModeByValue
6
- } from "./chunk-VNF236GG.js";
6
+ } from "./chunk-3XYLEK4H.js";
7
7
  import {
8
8
  parseRegion
9
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  } from "./chunk-FNDNSDKW.js";
10
10
  import {
11
11
  genePins
12
- } from "./chunk-BFUS3ENH.js";
12
+ } from "./chunk-X5ULFAMM.js";
13
13
  import {
14
14
  version
15
- } from "./chunk-AJQRKN3X.js";
15
+ } from "./chunk-L2RQV23D.js";
16
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  import {
17
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  axisScaleOf
18
- } from "./chunk-F4CDC72I.js";
18
+ } from "./chunk-2RCKHCF7.js";
19
19
  import {
20
20
  figureScene
21
- } from "./chunk-UTDMFVC7.js";
21
+ } from "./chunk-R3NPBUKT.js";
22
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  import {
23
23
  encodingStops
24
- } from "./chunk-6RB5ZQ34.js";
24
+ } from "./chunk-N4AJV4GH.js";
25
+ import {
26
+ laneSlideAt,
27
+ passesKey,
28
+ threadsPasses
29
+ } from "./chunk-7GDNDQD7.js";
25
30
  import {
26
31
  abgrAlpha,
27
32
  abgrBlue,
@@ -30,13 +35,13 @@ import {
30
35
  } from "./chunk-G2FD7S3C.js";
31
36
  import {
32
37
  FIGURE_DEFAULTS
33
- } from "./chunk-4SN7R4UF.js";
38
+ } from "./chunk-6MD4VS2F.js";
34
39
  import {
35
40
  engineSettingsOf,
36
41
  fitTransform,
37
42
  forceLayout,
38
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  loadGraph
39
- } from "./chunk-XKPXOIWD.js";
44
+ } from "./chunk-S3ICPPXC.js";
40
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  import {
41
46
  referenceVisitStarts
42
47
  } from "./chunk-3YBP46PB.js";
@@ -86,15 +91,29 @@ function figureData(graph, layout, o = {}) {
86
91
  }
87
92
  const axis = axisScaleOf(fit.scale, pixelRows);
88
93
  const panels = [];
89
- const keys = columns(["panel", "walk", "note", "scale", "stops"]);
94
+ const keys = columns([
95
+ "panel",
96
+ "walk",
97
+ "name",
98
+ "color",
99
+ "note",
100
+ "scale",
101
+ "stops",
102
+ "field"
103
+ ]);
104
+ const threadKeys = columns(["panel", "note"]);
90
105
  const pushKey = (walk, panel) => {
91
106
  const key = keyText(walk);
107
+ const stops = encodingStops(walk.encoding).map((s) => cssHex(s.abgr));
92
108
  keys.push({
93
109
  panel,
94
110
  walk: labelOf(walk.name),
111
+ name: walk.name,
112
+ color: walk.encoding.field === "walk" ? stops[0] : "",
95
113
  note: key.note,
96
114
  scale: key.scale ?? "",
97
- stops: encodingStops(walk.encoding).map((s) => cssHex(s.abgr)).join(",")
115
+ stops: stops.join(","),
116
+ field: walk.encoding.field
98
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  });
99
118
  return key;
100
119
  };
@@ -103,19 +122,30 @@ function figureData(graph, layout, o = {}) {
103
122
  for (const { panel } of ordered) {
104
123
  const walk = panel.walks[0];
105
124
  const name = labelOf(walk.name);
125
+ const firstKeyRow = keys.out.panel.length;
106
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  const key = pushKey(walk, name);
107
127
  panels.push({
108
128
  highlight: panel,
109
129
  name,
110
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  key: key.note,
111
- range: key.scale ?? ""
131
+ range: key.scale ?? "",
132
+ firstKeyRow
112
133
  });
113
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  }
114
135
  } else {
115
136
  for (const walk of lift?.walks ?? []) {
116
137
  pushKey(walk, "");
117
138
  }
118
- panels.push({ highlight: lift, name: "", key: "", range: "" });
139
+ if (threadsPasses(lift?.walks ?? [])) {
140
+ threadKeys.push({ panel: "", note: passesKey(lift?.walks ?? []) });
141
+ }
142
+ panels.push({
143
+ highlight: lift,
144
+ name: "",
145
+ key: "",
146
+ range: "",
147
+ firstKeyRow: 0
148
+ });
119
149
  }
120
150
  const pins = columns(["gene", "x", "y", "covered", "bp"]);
121
151
  const exons = columns(["gene", "node", "stretch", "x", "y"]);
@@ -146,7 +176,12 @@ function figureData(graph, layout, o = {}) {
146
176
  "y",
147
177
  "color",
148
178
  "alpha",
149
- "width"
179
+ "width",
180
+ "walk",
181
+ "pass",
182
+ "nx",
183
+ "ny",
184
+ "offset"
150
185
  ]);
151
186
  const edges = columns([
152
187
  "panel",
@@ -163,7 +198,15 @@ function figureData(graph, layout, o = {}) {
163
198
  "color",
164
199
  "alpha",
165
200
  "width",
166
- "deletion"
201
+ "deletion",
202
+ "walk",
203
+ "pass",
204
+ "nx",
205
+ "ny",
206
+ "offset",
207
+ "nx1",
208
+ "ny1",
209
+ "offset1"
167
210
  ]);
168
211
  const arrows = columns([
169
212
  "panel",
@@ -176,12 +219,18 @@ function figureData(graph, layout, o = {}) {
176
219
  "color",
177
220
  "alpha"
178
221
  ]);
179
- for (const { highlight, name: panel } of panels) {
222
+ for (const { highlight, name: panel, firstKeyRow } of panels) {
180
223
  const batch = geometry(highlight, axis);
224
+ const keyRowOf = (walk) => walk === void 0 ? null : firstKeyRow + walk;
225
+ const screen = ({ normal, offsetX }) => ({
226
+ nx: normal.nx,
227
+ ny: normal.ny,
228
+ offset: offsetX * axis.scaleX
229
+ });
181
230
  for (const [node, run] of batch.nodeStrokeRuns) {
182
231
  for (let i = run.start; i < run.start + run.count; i++) {
183
232
  const s = batch.nodeStrokes[i];
184
- for (const p of s.points) {
233
+ s.points.forEach((p, k) => {
185
234
  nodes.push({
186
235
  panel,
187
236
  node,
@@ -190,15 +239,28 @@ function figureData(graph, layout, o = {}) {
190
239
  y: p.y,
191
240
  color: cssHex(s.color),
192
241
  alpha: alphaOf(s.color),
193
- width: s.thickness * 2
242
+ width: s.thickness * 2,
243
+ walk: keyRowOf(s.walk),
244
+ pass: s.pass ?? null,
245
+ nx: s.normals?.[k]?.nx ?? 0,
246
+ ny: s.normals?.[k]?.ny ?? 0,
247
+ offset: (s.offsetX ?? 0) * axis.scaleX
194
248
  });
195
- }
249
+ });
196
250
  }
197
251
  }
198
252
  for (const [edge, run] of batch.edgeCurveRuns) {
199
253
  for (let i = run.start; i < run.start + run.count; i++) {
200
254
  const b = batch.edgeCurves[i];
201
- for (const c of b.curves) {
255
+ const n = b.curves.length;
256
+ const start = b.normal && { normal: b.normal, offsetX: b.offsetX ?? 0 };
257
+ const finish = b.endNormal && {
258
+ normal: b.endNormal,
259
+ offsetX: b.endOffsetX ?? 0
260
+ };
261
+ const slideAlong = (along) => start && finish ? screen(laneSlideAt(start, finish, along)) : { nx: 0, ny: 0, offset: 0 };
262
+ b.curves.forEach((c, k) => {
263
+ const end = slideAlong((k + 1) / n);
202
264
  edges.push({
203
265
  panel,
204
266
  edge,
@@ -207,9 +269,15 @@ function figureData(graph, layout, o = {}) {
207
269
  color: cssHex(b.color),
208
270
  alpha: alphaOf(b.color),
209
271
  width: b.thickness * 2,
210
- deletion: drawnDeletions.bypassed.has(edge)
272
+ deletion: drawnDeletions.bypassed.has(edge),
273
+ walk: keyRowOf(b.walk),
274
+ pass: b.pass ?? null,
275
+ ...slideAlong(k / n),
276
+ nx1: end.nx,
277
+ ny1: end.ny,
278
+ offset1: end.offset
211
279
  });
212
- }
280
+ });
213
281
  }
214
282
  }
215
283
  for (const [edge, run] of batch.arrowRuns) {
@@ -253,6 +321,7 @@ function figureData(graph, layout, o = {}) {
253
321
  range: panels.map((p) => p.range)
254
322
  },
255
323
  keys: keys.out,
324
+ threadKeys: threadKeys.out,
256
325
  pins: pins.out,
257
326
  exons: exons.out,
258
327
  walkNames: [...new Set((graph.paths ?? []).map((p) => p.name))],
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  walkRows
3
- } from "./chunk-BXE3SBBN.js";
3
+ } from "./chunk-C3KAPREU.js";
4
4
  import {
5
5
  ROW_HEIGHT_PX
6
6
  } from "./chunk-CPMHA4W5.js";
@@ -3,7 +3,7 @@ import {
3
3
  } from "./chunk-HMXCN6PG.js";
4
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  import {
5
5
  edgeCurvesOf
6
- } from "./chunk-P276TWPM.js";
6
+ } from "./chunk-3CXZUC2Y.js";
7
7
 
8
8
  // src/util/edgeCurves.ts
9
9
  var cache = weakMemo();
@@ -1,9 +1,9 @@
1
1
  import {
2
2
  polylineSlice
3
- } from "./chunk-2VMKQKVO.js";
3
+ } from "./chunk-YIWN32ZX.js";
4
4
  import {
5
5
  svgPath
6
- } from "./chunk-VACK24HF.js";
6
+ } from "./chunk-735MPLUL.js";
7
7
  import {
8
8
  firstNodeAtOrAfter,
9
9
  isAnchored
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  formatBp
3
- } from "./chunk-N73RA4DR.js";
3
+ } from "./chunk-6CXLLJ2C.js";
4
4
  import {
5
5
  pushTo
6
6
  } from "./chunk-BSOZW3FC.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  pathSteps
3
- } from "./chunk-63XWYNID.js";
3
+ } from "./chunk-G4WQBRDS.js";
4
4
  import {
5
5
  pathOrigin
6
6
  } from "./chunk-3YBP46PB.js";
@@ -1,10 +1,10 @@
1
1
  import {
2
2
  encodedColor,
3
3
  resolveEncoding
4
- } from "./chunk-6RB5ZQ34.js";
4
+ } from "./chunk-N4AJV4GH.js";
5
5
  import {
6
6
  rampFraction
7
- } from "./chunk-VXKL2ZLR.js";
7
+ } from "./chunk-2H3ALI6L.js";
8
8
  import {
9
9
  gapParts
10
10
  } from "./chunk-LG2UK4MB.js";
@@ -54,6 +54,8 @@ function highlightOf(graph, name, { byId, edgeAt }) {
54
54
  const nodeIds = /* @__PURE__ */ new Set();
55
55
  const edgeIndexes = /* @__PURE__ */ new Set();
56
56
  const progress = /* @__PURE__ */ new Map();
57
+ const passes = /* @__PURE__ */ new Map();
58
+ let mostPasses = 1;
57
59
  let before = 0;
58
60
  for (const piece of pieces) {
59
61
  if (range) {
@@ -61,6 +63,9 @@ function highlightOf(graph, name, { byId, edgeAt }) {
61
63
  }
62
64
  piece.nodeIds.forEach((id, i) => {
63
65
  nodeIds.add(id);
66
+ const passed = (passes.get(id) ?? 0) + 1;
67
+ passes.set(id, passed);
68
+ mostPasses = Math.max(mostPasses, passed);
64
69
  if (i > 0) {
65
70
  const a = piece.nodeIds[i - 1];
66
71
  const index = edgeAt.get(`${a}>${id}`) ?? edgeAt.get(`${id}>${a}`);
@@ -107,6 +112,9 @@ function highlightOf(graph, name, { byId, edgeAt }) {
107
112
  nodeIds,
108
113
  edgeIndexes,
109
114
  progress,
115
+ passes,
116
+ mostPasses,
117
+ route: pieces.map((piece) => piece.nodeIds),
110
118
  steps: pieces.reduce((sum, piece) => sum + piece.nodeIds.length, 0),
111
119
  bp,
112
120
  referenceBp: referenceSpan(),
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  ownStrand,
3
3
  strandSides
4
- } from "./chunk-VACK24HF.js";
4
+ } from "./chunk-735MPLUL.js";
5
5
  import {
6
6
  pushTo
7
7
  } from "./chunk-BSOZW3FC.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  computeColorSchemeRange,
3
3
  getNodeColor
4
- } from "./chunk-VXKL2ZLR.js";
4
+ } from "./chunk-2H3ALI6L.js";
5
5
  import {
6
6
  abgrToCssRgba
7
7
  } from "./chunk-G2FD7S3C.js";
@@ -8,33 +8,33 @@ import {
8
8
  import "../chunks/chunk-EQDQ7P4Y.js";
9
9
  import {
10
10
  figureSvg
11
- } from "../chunks/chunk-QXBQDHKL.js";
12
- import "../chunks/chunk-PKGPSTRW.js";
11
+ } from "../chunks/chunk-MO4DIRHD.js";
12
+ import "../chunks/chunk-4OVIUCSB.js";
13
13
  import "../chunks/chunk-4DMSPNYV.js";
14
14
  import "../chunks/chunk-RBCE2OQH.js";
15
15
  import "../chunks/chunk-V4YML3GR.js";
16
16
  import {
17
17
  genesOnRow,
18
18
  placeRowGenes
19
- } from "../chunks/chunk-EPOPGV5G.js";
19
+ } from "../chunks/chunk-LA6JHEVV.js";
20
20
  import "../chunks/chunk-JSUCGZ6K.js";
21
- import "../chunks/chunk-QJC63NFR.js";
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- import "../chunks/chunk-LH436HS2.js";
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- import "../chunks/chunk-2US43KNG.js";
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+ import "../chunks/chunk-G3GLGDKV.js";
22
+ import "../chunks/chunk-NHOXLUIL.js";
23
+ import "../chunks/chunk-7PEYA3NA.js";
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  import "../chunks/chunk-H2H4Y3TV.js";
25
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  import {
26
26
  laidOutGraph,
27
27
  walkLayers
28
- } from "../chunks/chunk-T3MEG5D3.js";
28
+ } from "../chunks/chunk-U6JPSXJ3.js";
29
29
  import {
30
30
  LAYOUT_ENGINE_VALUES,
31
31
  isLayoutEngineKind
32
32
  } from "../chunks/chunk-CO6RGQAD.js";
33
33
  import {
34
34
  LAYOUT_MODES
35
- } from "../chunks/chunk-VNF236GG.js";
36
- import "../chunks/chunk-63XWYNID.js";
37
- import "../chunks/chunk-SDI6BVG7.js";
35
+ } from "../chunks/chunk-3XYLEK4H.js";
36
+ import "../chunks/chunk-G4WQBRDS.js";
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+ import "../chunks/chunk-J4PDHWP2.js";
38
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  import "../chunks/chunk-XR2HMGAS.js";
39
39
  import "../chunks/chunk-GJLZ2MKE.js";
40
40
  import "../chunks/chunk-MYLAJDKB.js";
@@ -50,30 +50,31 @@ import {
50
50
  } from "../chunks/chunk-FNDNSDKW.js";
51
51
  import "../chunks/chunk-ZKSC7QVE.js";
52
52
  import "../chunks/chunk-HNWJ4B7S.js";
53
- import "../chunks/chunk-BFUS3ENH.js";
54
- import "../chunks/chunk-AJQRKN3X.js";
55
- import "../chunks/chunk-F4CDC72I.js";
56
- import "../chunks/chunk-UTDMFVC7.js";
53
+ import "../chunks/chunk-X5ULFAMM.js";
54
+ import "../chunks/chunk-L2RQV23D.js";
55
+ import "../chunks/chunk-2RCKHCF7.js";
56
+ import "../chunks/chunk-R3NPBUKT.js";
57
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  import "../chunks/chunk-LOCJN3BZ.js";
58
- import "../chunks/chunk-Z4HXW6ZH.js";
59
- import "../chunks/chunk-6RB5ZQ34.js";
60
- import "../chunks/chunk-VXKL2ZLR.js";
58
+ import "../chunks/chunk-YF6T33PU.js";
59
+ import "../chunks/chunk-N4AJV4GH.js";
60
+ import "../chunks/chunk-2H3ALI6L.js";
61
+ import "../chunks/chunk-7GDNDQD7.js";
61
62
  import "../chunks/chunk-G2FD7S3C.js";
62
- import "../chunks/chunk-SG7VQB4F.js";
63
+ import "../chunks/chunk-SDDMV2MM.js";
63
64
  import "../chunks/chunk-GQZVR5DW.js";
64
- import "../chunks/chunk-33KUO34R.js";
65
- import "../chunks/chunk-SENPGW4O.js";
65
+ import "../chunks/chunk-VSRRIFRF.js";
66
+ import "../chunks/chunk-VCUOYVLC.js";
66
67
  import {
67
68
  filterSamples,
68
69
  walkRows
69
- } from "../chunks/chunk-BXE3SBBN.js";
70
- import "../chunks/chunk-G7SG4XMK.js";
71
- import "../chunks/chunk-GD6RUZU5.js";
70
+ } from "../chunks/chunk-C3KAPREU.js";
71
+ import "../chunks/chunk-LODKC7PJ.js";
72
+ import "../chunks/chunk-JKIAHYAW.js";
72
73
  import "../chunks/chunk-ZANALBSX.js";
73
- import "../chunks/chunk-4SN7R4UF.js";
74
- import "../chunks/chunk-XKPXOIWD.js";
74
+ import "../chunks/chunk-6MD4VS2F.js";
75
+ import "../chunks/chunk-S3ICPPXC.js";
75
76
  import "../chunks/chunk-OPPVSPEF.js";
76
- import "../chunks/chunk-ZZZ6NVLW.js";
77
+ import "../chunks/chunk-22ZMVREZ.js";
77
78
  import "../chunks/chunk-CKUVEHSS.js";
78
79
  import "../chunks/chunk-VPE4AYP7.js";
79
80
  import "../chunks/chunk-TUMJNAOL.js";
@@ -84,17 +85,17 @@ import "../chunks/chunk-VX656OAZ.js";
84
85
  import "../chunks/chunk-5ORP7EFJ.js";
85
86
  import "../chunks/chunk-VSSIYQYF.js";
86
87
  import "../chunks/chunk-LG2UK4MB.js";
87
- import "../chunks/chunk-N73RA4DR.js";
88
+ import "../chunks/chunk-6CXLLJ2C.js";
88
89
  import "../chunks/chunk-HMXCN6PG.js";
89
90
  import "../chunks/chunk-AB35TJST.js";
90
- import "../chunks/chunk-2VMKQKVO.js";
91
+ import "../chunks/chunk-YIWN32ZX.js";
91
92
  import "../chunks/chunk-HKYXWZQS.js";
92
93
  import "../chunks/chunk-34BOZKIE.js";
93
94
  import "../chunks/chunk-JKJWSY4V.js";
94
- import "../chunks/chunk-P276TWPM.js";
95
+ import "../chunks/chunk-3CXZUC2Y.js";
95
96
  import "../chunks/chunk-TLWXLNLY.js";
96
97
  import "../chunks/chunk-3YBP46PB.js";
97
- import "../chunks/chunk-VACK24HF.js";
98
+ import "../chunks/chunk-735MPLUL.js";
98
99
  import "../chunks/chunk-CPMHA4W5.js";
99
100
  import "../chunks/chunk-ZPZ7GNBT.js";
100
101
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/cli/fold.js CHANGED
@@ -7,12 +7,12 @@ import {
7
7
  } from "../chunks/chunk-O4EGE27I.js";
8
8
  import {
9
9
  foldVariants
10
- } from "../chunks/chunk-4KOYS5WR.js";
10
+ } from "../chunks/chunk-R4XCTRIU.js";
11
11
  import {
12
12
  loadGraph
13
- } from "../chunks/chunk-XKPXOIWD.js";
13
+ } from "../chunks/chunk-S3ICPPXC.js";
14
14
  import "../chunks/chunk-OPPVSPEF.js";
15
- import "../chunks/chunk-ZZZ6NVLW.js";
15
+ import "../chunks/chunk-22ZMVREZ.js";
16
16
  import "../chunks/chunk-CKUVEHSS.js";
17
17
  import "../chunks/chunk-VPE4AYP7.js";
18
18
  import "../chunks/chunk-TUMJNAOL.js";
@@ -22,13 +22,13 @@ import "../chunks/chunk-7L7MN2OM.js";
22
22
  import "../chunks/chunk-VX656OAZ.js";
23
23
  import "../chunks/chunk-VSSIYQYF.js";
24
24
  import "../chunks/chunk-LG2UK4MB.js";
25
- import "../chunks/chunk-2VMKQKVO.js";
25
+ import "../chunks/chunk-YIWN32ZX.js";
26
26
  import "../chunks/chunk-HKYXWZQS.js";
27
27
  import "../chunks/chunk-34BOZKIE.js";
28
- import "../chunks/chunk-P276TWPM.js";
28
+ import "../chunks/chunk-3CXZUC2Y.js";
29
29
  import "../chunks/chunk-TLWXLNLY.js";
30
30
  import "../chunks/chunk-3YBP46PB.js";
31
- import "../chunks/chunk-VACK24HF.js";
31
+ import "../chunks/chunk-735MPLUL.js";
32
32
  import "../chunks/chunk-CPMHA4W5.js";
33
33
  import "../chunks/chunk-ZPZ7GNBT.js";
34
34
  import "../chunks/chunk-BSOZW3FC.js";
@@ -3,10 +3,10 @@ import {
3
3
  deletionDrawing,
4
4
  deletionEdges,
5
5
  edgeCurvesOf
6
- } from "./chunks/chunk-P276TWPM.js";
6
+ } from "./chunks/chunk-3CXZUC2Y.js";
7
7
  import "./chunks/chunk-TLWXLNLY.js";
8
8
  import "./chunks/chunk-3YBP46PB.js";
9
- import "./chunks/chunk-VACK24HF.js";
9
+ import "./chunks/chunk-735MPLUL.js";
10
10
  import "./chunks/chunk-CPMHA4W5.js";
11
11
  import "./chunks/chunk-ZPZ7GNBT.js";
12
12
  import "./chunks/chunk-BSOZW3FC.js";
package/dist/figure.js CHANGED
@@ -1,37 +1,38 @@
1
1
  import {
2
2
  figureSvg
3
- } from "./chunks/chunk-QXBQDHKL.js";
4
- import "./chunks/chunk-PKGPSTRW.js";
3
+ } from "./chunks/chunk-MO4DIRHD.js";
4
+ import "./chunks/chunk-4OVIUCSB.js";
5
5
  import "./chunks/chunk-4DMSPNYV.js";
6
6
  import "./chunks/chunk-RBCE2OQH.js";
7
7
  import "./chunks/chunk-V4YML3GR.js";
8
- import "./chunks/chunk-EPOPGV5G.js";
8
+ import "./chunks/chunk-LA6JHEVV.js";
9
9
  import "./chunks/chunk-JSUCGZ6K.js";
10
- import "./chunks/chunk-QJC63NFR.js";
11
- import "./chunks/chunk-LH436HS2.js";
12
- import "./chunks/chunk-2US43KNG.js";
10
+ import "./chunks/chunk-G3GLGDKV.js";
11
+ import "./chunks/chunk-NHOXLUIL.js";
12
+ import "./chunks/chunk-7PEYA3NA.js";
13
13
  import "./chunks/chunk-H2H4Y3TV.js";
14
- import "./chunks/chunk-BFUS3ENH.js";
15
- import "./chunks/chunk-AJQRKN3X.js";
16
- import "./chunks/chunk-F4CDC72I.js";
17
- import "./chunks/chunk-UTDMFVC7.js";
14
+ import "./chunks/chunk-X5ULFAMM.js";
15
+ import "./chunks/chunk-L2RQV23D.js";
16
+ import "./chunks/chunk-2RCKHCF7.js";
17
+ import "./chunks/chunk-R3NPBUKT.js";
18
18
  import "./chunks/chunk-LOCJN3BZ.js";
19
- import "./chunks/chunk-Z4HXW6ZH.js";
20
- import "./chunks/chunk-6RB5ZQ34.js";
21
- import "./chunks/chunk-VXKL2ZLR.js";
19
+ import "./chunks/chunk-YF6T33PU.js";
20
+ import "./chunks/chunk-N4AJV4GH.js";
21
+ import "./chunks/chunk-2H3ALI6L.js";
22
+ import "./chunks/chunk-7GDNDQD7.js";
22
23
  import "./chunks/chunk-G2FD7S3C.js";
23
- import "./chunks/chunk-SG7VQB4F.js";
24
+ import "./chunks/chunk-SDDMV2MM.js";
24
25
  import "./chunks/chunk-GQZVR5DW.js";
25
- import "./chunks/chunk-33KUO34R.js";
26
- import "./chunks/chunk-SENPGW4O.js";
27
- import "./chunks/chunk-BXE3SBBN.js";
28
- import "./chunks/chunk-G7SG4XMK.js";
29
- import "./chunks/chunk-GD6RUZU5.js";
26
+ import "./chunks/chunk-VSRRIFRF.js";
27
+ import "./chunks/chunk-VCUOYVLC.js";
28
+ import "./chunks/chunk-C3KAPREU.js";
29
+ import "./chunks/chunk-LODKC7PJ.js";
30
+ import "./chunks/chunk-JKIAHYAW.js";
30
31
  import "./chunks/chunk-ZANALBSX.js";
31
- import "./chunks/chunk-4SN7R4UF.js";
32
- import "./chunks/chunk-XKPXOIWD.js";
32
+ import "./chunks/chunk-6MD4VS2F.js";
33
+ import "./chunks/chunk-S3ICPPXC.js";
33
34
  import "./chunks/chunk-OPPVSPEF.js";
34
- import "./chunks/chunk-ZZZ6NVLW.js";
35
+ import "./chunks/chunk-22ZMVREZ.js";
35
36
  import "./chunks/chunk-CKUVEHSS.js";
36
37
  import "./chunks/chunk-VPE4AYP7.js";
37
38
  import "./chunks/chunk-TUMJNAOL.js";
@@ -42,17 +43,17 @@ import "./chunks/chunk-VX656OAZ.js";
42
43
  import "./chunks/chunk-5ORP7EFJ.js";
43
44
  import "./chunks/chunk-VSSIYQYF.js";
44
45
  import "./chunks/chunk-LG2UK4MB.js";
45
- import "./chunks/chunk-N73RA4DR.js";
46
+ import "./chunks/chunk-6CXLLJ2C.js";
46
47
  import "./chunks/chunk-HMXCN6PG.js";
47
48
  import "./chunks/chunk-AB35TJST.js";
48
- import "./chunks/chunk-2VMKQKVO.js";
49
+ import "./chunks/chunk-YIWN32ZX.js";
49
50
  import "./chunks/chunk-HKYXWZQS.js";
50
51
  import "./chunks/chunk-34BOZKIE.js";
51
52
  import "./chunks/chunk-JKJWSY4V.js";
52
- import "./chunks/chunk-P276TWPM.js";
53
+ import "./chunks/chunk-3CXZUC2Y.js";
53
54
  import "./chunks/chunk-TLWXLNLY.js";
54
55
  import "./chunks/chunk-3YBP46PB.js";
55
- import "./chunks/chunk-VACK24HF.js";
56
+ import "./chunks/chunk-735MPLUL.js";
56
57
  import "./chunks/chunk-CPMHA4W5.js";
57
58
  import "./chunks/chunk-ZPZ7GNBT.js";
58
59
  import "./chunks/chunk-BSOZW3FC.js";
@@ -3,11 +3,11 @@ import {
3
3
  gfaFigureData,
4
4
  laidOutGraph,
5
5
  walkLayers
6
- } from "./chunks/chunk-T3MEG5D3.js";
6
+ } from "./chunks/chunk-U6JPSXJ3.js";
7
7
  import "./chunks/chunk-CO6RGQAD.js";
8
- import "./chunks/chunk-VNF236GG.js";
9
- import "./chunks/chunk-63XWYNID.js";
10
- import "./chunks/chunk-SDI6BVG7.js";
8
+ import "./chunks/chunk-3XYLEK4H.js";
9
+ import "./chunks/chunk-G4WQBRDS.js";
10
+ import "./chunks/chunk-J4PDHWP2.js";
11
11
  import "./chunks/chunk-XR2HMGAS.js";
12
12
  import "./chunks/chunk-GJLZ2MKE.js";
13
13
  import "./chunks/chunk-MYLAJDKB.js";
@@ -17,27 +17,28 @@ import "./chunks/chunk-3GLG3ZLE.js";
17
17
  import "./chunks/chunk-FNDNSDKW.js";
18
18
  import "./chunks/chunk-ZKSC7QVE.js";
19
19
  import "./chunks/chunk-HNWJ4B7S.js";
20
- import "./chunks/chunk-BFUS3ENH.js";
21
- import "./chunks/chunk-AJQRKN3X.js";
22
- import "./chunks/chunk-F4CDC72I.js";
23
- import "./chunks/chunk-UTDMFVC7.js";
20
+ import "./chunks/chunk-X5ULFAMM.js";
21
+ import "./chunks/chunk-L2RQV23D.js";
22
+ import "./chunks/chunk-2RCKHCF7.js";
23
+ import "./chunks/chunk-R3NPBUKT.js";
24
24
  import "./chunks/chunk-LOCJN3BZ.js";
25
- import "./chunks/chunk-Z4HXW6ZH.js";
26
- import "./chunks/chunk-6RB5ZQ34.js";
27
- import "./chunks/chunk-VXKL2ZLR.js";
25
+ import "./chunks/chunk-YF6T33PU.js";
26
+ import "./chunks/chunk-N4AJV4GH.js";
27
+ import "./chunks/chunk-2H3ALI6L.js";
28
+ import "./chunks/chunk-7GDNDQD7.js";
28
29
  import "./chunks/chunk-G2FD7S3C.js";
29
- import "./chunks/chunk-SG7VQB4F.js";
30
+ import "./chunks/chunk-SDDMV2MM.js";
30
31
  import "./chunks/chunk-GQZVR5DW.js";
31
- import "./chunks/chunk-33KUO34R.js";
32
- import "./chunks/chunk-SENPGW4O.js";
33
- import "./chunks/chunk-BXE3SBBN.js";
34
- import "./chunks/chunk-G7SG4XMK.js";
35
- import "./chunks/chunk-GD6RUZU5.js";
32
+ import "./chunks/chunk-VSRRIFRF.js";
33
+ import "./chunks/chunk-VCUOYVLC.js";
34
+ import "./chunks/chunk-C3KAPREU.js";
35
+ import "./chunks/chunk-LODKC7PJ.js";
36
+ import "./chunks/chunk-JKIAHYAW.js";
36
37
  import "./chunks/chunk-ZANALBSX.js";
37
- import "./chunks/chunk-4SN7R4UF.js";
38
- import "./chunks/chunk-XKPXOIWD.js";
38
+ import "./chunks/chunk-6MD4VS2F.js";
39
+ import "./chunks/chunk-S3ICPPXC.js";
39
40
  import "./chunks/chunk-OPPVSPEF.js";
40
- import "./chunks/chunk-ZZZ6NVLW.js";
41
+ import "./chunks/chunk-22ZMVREZ.js";
41
42
  import "./chunks/chunk-CKUVEHSS.js";
42
43
  import "./chunks/chunk-VPE4AYP7.js";
43
44
  import "./chunks/chunk-TUMJNAOL.js";
@@ -48,17 +49,17 @@ import "./chunks/chunk-VX656OAZ.js";
48
49
  import "./chunks/chunk-5ORP7EFJ.js";
49
50
  import "./chunks/chunk-VSSIYQYF.js";
50
51
  import "./chunks/chunk-LG2UK4MB.js";
51
- import "./chunks/chunk-N73RA4DR.js";
52
+ import "./chunks/chunk-6CXLLJ2C.js";
52
53
  import "./chunks/chunk-HMXCN6PG.js";
53
54
  import "./chunks/chunk-AB35TJST.js";
54
- import "./chunks/chunk-2VMKQKVO.js";
55
+ import "./chunks/chunk-YIWN32ZX.js";
55
56
  import "./chunks/chunk-HKYXWZQS.js";
56
57
  import "./chunks/chunk-34BOZKIE.js";
57
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  import "./chunks/chunk-JKJWSY4V.js";
58
- import "./chunks/chunk-P276TWPM.js";
59
+ import "./chunks/chunk-3CXZUC2Y.js";
59
60
  import "./chunks/chunk-TLWXLNLY.js";
60
61
  import "./chunks/chunk-3YBP46PB.js";
61
- import "./chunks/chunk-VACK24HF.js";
62
+ import "./chunks/chunk-735MPLUL.js";
62
63
  import "./chunks/chunk-CPMHA4W5.js";
63
64
  import "./chunks/chunk-ZPZ7GNBT.js";
64
65
  import "./chunks/chunk-BSOZW3FC.js";