@jbrowse/bandage-core 11.5.0 → 11.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (147) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  7. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  8. package/dist/chunks/{chunk-HN3WHMPJ.js → chunk-2XEAITWM.js} +15 -5
  9. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  10. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  11. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  12. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  13. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  14. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  15. package/dist/chunks/{chunk-XKZ56L5A.js → chunk-5ZQKQ24Z.js} +1 -1
  16. package/dist/chunks/{chunk-VD4MLYEK.js → chunk-65YCFVS4.js} +2 -2
  17. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  18. package/dist/chunks/{chunk-NJGYLYU7.js → chunk-7L7MN2OM.js} +6 -3
  19. package/dist/chunks/{chunk-TRGKMLXT.js → chunk-A7Q7RTWX.js} +26 -19
  20. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  21. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  22. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  23. package/dist/chunks/{chunk-IOWLTUEB.js → chunk-BXE3SBBN.js} +1 -1
  24. package/dist/chunks/{chunk-2E25TX4G.js → chunk-C6E6HXP5.js} +4 -4
  25. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  26. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  27. package/dist/chunks/{chunk-5F4D35U5.js → chunk-DD5EZG3T.js} +3 -3
  28. package/dist/chunks/{chunk-AKLSY4GD.js → chunk-DTEXQ65J.js} +1 -1
  29. package/dist/chunks/{chunk-VQ7474EH.js → chunk-DUREQSOJ.js} +9 -8
  30. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  31. package/dist/chunks/{chunk-KOJKFNCW.js → chunk-EH5JZETS.js} +26 -12
  32. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  33. package/dist/chunks/{chunk-J3JODFDF.js → chunk-FNDNSDKW.js} +3 -3
  34. package/dist/chunks/{chunk-64FCX424.js → chunk-G7SG4XMK.js} +62 -14
  35. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  36. package/dist/chunks/{chunk-A32ZKSHN.js → chunk-HELOUO6K.js} +5 -5
  37. package/dist/chunks/{chunk-PQBALYSO.js → chunk-HERVZPWA.js} +16 -16
  38. package/dist/chunks/{chunk-3U3C4PRK.js → chunk-HMEAGAGC.js} +3 -3
  39. package/dist/chunks/{chunk-WC6HX6GJ.js → chunk-IJCSW6MV.js} +2 -2
  40. package/dist/chunks/{chunk-JOWKKQAL.js → chunk-JGHZ3N34.js} +14 -9
  41. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  42. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  43. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  44. package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js} +2 -1
  45. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  46. package/dist/chunks/{chunk-K5LDBMLX.js → chunk-NTKWT6XL.js} +1 -1
  47. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  48. package/dist/chunks/{chunk-JOLLU34X.js → chunk-PQIFYQVI.js} +1 -1
  49. package/dist/chunks/{chunk-EGBBIXTG.js → chunk-QCOVHLJO.js} +1 -1
  50. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  51. package/dist/chunks/{chunk-FWSERUJV.js → chunk-SENPGW4O.js} +1 -1
  52. package/dist/chunks/{chunk-RK3HRRCW.js → chunk-SIA75TEG.js} +6 -7
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-SVPR7IZO.js} +4 -4
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-TUMJNAOL.js} +5 -5
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-DZR37KXT.js → chunk-VSSIYQYF.js} +1 -1
  60. package/dist/chunks/{chunk-3BCVMZUT.js → chunk-WWIUC4N4.js} +10 -10
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-WG5D2H7X.js → chunk-YER6TUXV.js} +11 -11
  63. package/dist/chunks/{chunk-7EDGWT67.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/chunks/{chunk-WLR4KJVI.js → chunk-ZHZRAYEM.js} +1 -1
  67. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-ZKSC7QVE.js} +3 -3
  68. package/dist/cli/figure.js +53 -48
  69. package/dist/cli/fold.js +13 -13
  70. package/dist/deletionEdges.js +5 -2
  71. package/dist/facetGrid.js +2 -2
  72. package/dist/figure.js +37 -37
  73. package/dist/figureData.js +39 -39
  74. package/dist/figureScene.js +27 -27
  75. package/dist/figureSettings.js +13 -13
  76. package/dist/foldVariants.js +2 -2
  77. package/dist/gaf/parseGaf.js +1 -1
  78. package/dist/gbzCut.js +6 -6
  79. package/dist/gbzWindow.js +5 -5
  80. package/dist/genes/backboneGenes.js +4 -4
  81. package/dist/genes/geneFiles.js +1 -1
  82. package/dist/genes/genePins.js +3 -3
  83. package/dist/gfa/gfaConverter.js +5 -5
  84. package/dist/gfa/gfaTables.js +2 -2
  85. package/dist/gfa/graphTables.js +3 -3
  86. package/dist/gfa/walkStops.js +1 -1
  87. package/dist/gfa-core/gfaParser.js +1 -1
  88. package/dist/gfa-core/index.js +1 -1
  89. package/dist/graphLabels.js +7 -4
  90. package/dist/index.js +64 -64
  91. package/dist/labelLayout.js +11 -8
  92. package/dist/layout/anchoredLayout.js +1 -1
  93. package/dist/layout/forceCache.js +13 -13
  94. package/dist/layout/mergeRuns.js +2 -2
  95. package/dist/layout/placeOffReference.js +1 -1
  96. package/dist/layout/sampleRowLayout.js +2 -2
  97. package/dist/layout/trimToWindow.js +2 -2
  98. package/dist/layout/tubeMapLayout.js +15 -15
  99. package/dist/layout/walkRowDraw.js +15 -13
  100. package/dist/layout/walkRowLayout.js +8 -8
  101. package/dist/layout/walkRowLinks.js +1 -1
  102. package/dist/layout/walkRowRuns.js +5 -5
  103. package/dist/layout/walkRows.js +6 -6
  104. package/dist/layout/walkStrip.js +18 -18
  105. package/dist/layoutEngines.js +1 -1
  106. package/dist/layoutModes.js +18 -18
  107. package/dist/locus.js +1 -1
  108. package/dist/nodeWidths.js +5 -3
  109. package/dist/pansn.js +1 -1
  110. package/dist/pathAnchoring.js +4 -2
  111. package/dist/pathColors.js +8 -8
  112. package/dist/pipeline.js +12 -12
  113. package/dist/reference.js +2 -2
  114. package/dist/referenceStrip.js +12 -12
  115. package/dist/renderer/Canvas2DRenderer.js +1 -1
  116. package/dist/renderer/GeometryBuilder.js +11 -11
  117. package/dist/tubeMap/axis.js +8 -5
  118. package/dist/tubeMap/bundle.js +16 -16
  119. package/dist/tubeMap/coarsen.js +16 -16
  120. package/dist/tubeMap/deviations.js +19 -19
  121. package/dist/tubeMap/draw.js +11 -9
  122. package/dist/tubeMap/genes.js +9 -6
  123. package/dist/tubeMap/nodeColors.js +12 -12
  124. package/dist/tubeMap/reads.js +4 -4
  125. package/dist/types/figureData.d.ts +12 -0
  126. package/dist/types/gaf/parseGaf.d.ts +1 -1
  127. package/dist/types/gfa/graphTables.d.ts +2 -0
  128. package/dist/types/gfa/walkStops.d.ts +1 -1
  129. package/dist/types/layout/walkRowDraw.d.ts +2 -1
  130. package/dist/types/layout/walkRows.d.ts +1 -0
  131. package/dist/types/nodeWidths.d.ts +2 -1
  132. package/dist/types/pathAnchoring.d.ts +2 -0
  133. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  134. package/dist/types/tubeMap/reads.d.ts +0 -1
  135. package/dist/types/types.d.ts +4 -0
  136. package/dist/types/util/geometry.d.ts +7 -1
  137. package/dist/types/version.d.ts +1 -1
  138. package/dist/util/SpatialIndex.js +7 -4
  139. package/dist/util/edgeCurves.js +6 -3
  140. package/dist/util/geometry.js +1 -1
  141. package/dist/util/hitDetection.js +8 -5
  142. package/dist/version.js +1 -1
  143. package/dist/viewport.js +13 -13
  144. package/dist/walkEncoding.js +12 -12
  145. package/dist/walkHighlight.js +14 -14
  146. package/dist/walkKey.js +9 -6
  147. package/package.json +1 -1
package/dist/layout/anchoredLayout.js CHANGED
@@ -8,7 +8,7 @@ import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  anchoredLayout
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  };
package/dist/layout/forceCache.js CHANGED
@@ -1,30 +1,30 @@
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  import {
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  createForceLayoutCache
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- } from "../chunks/chunk-AKLSY4GD.js";
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- import "../chunks/chunk-WG5D2H7X.js";
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+ } from "../chunks/chunk-DTEXQ65J.js";
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+ import "../chunks/chunk-YER6TUXV.js";
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  import "../chunks/chunk-OPPVSPEF.js";
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  import "../chunks/chunk-3PZSBNLI.js";
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  import "../chunks/chunk-CKUVEHSS.js";
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  import "../chunks/chunk-VPE4AYP7.js";
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- import "../chunks/chunk-FFHJGWDK.js";
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+ import "../chunks/chunk-TUMJNAOL.js";
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  import "../chunks/chunk-QYBZZI5H.js";
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- import "../chunks/chunk-5I3K4R2G.js";
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- import "../chunks/chunk-NJGYLYU7.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ import "../chunks/chunk-CFXXFHRK.js";
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+ import "../chunks/chunk-7L7MN2OM.js";
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  import "../chunks/chunk-VX656OAZ.js";
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- import "../chunks/chunk-DZR37KXT.js";
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- import "../chunks/chunk-EIY2SKD3.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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+ import "../chunks/chunk-VSSIYQYF.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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  import "../chunks/chunk-HKYXWZQS.js";
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  import "../chunks/chunk-34BOZKIE.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  export {
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  createForceLayoutCache
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  };
package/dist/layout/mergeRuns.js CHANGED
@@ -3,8 +3,8 @@ import {
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  polylineMidpoint,
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  polylineSlice,
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  splitRuns
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- } from "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ } from "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-VACK24HF.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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package/dist/layout/placeOffReference.js CHANGED
@@ -6,7 +6,7 @@ import "../chunks/chunk-VX656OAZ.js";
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  import "../chunks/chunk-BSOZW3FC.js";
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  import "../chunks/chunk-RJWPJCIB.js";
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  import "../chunks/chunk-HOAIOEI7.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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  };
package/dist/layout/sampleRowLayout.js CHANGED
@@ -1,6 +1,6 @@
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  sampleRowLayout
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- } from "../chunks/chunk-GJU6BJJA.js";
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+ } from "../chunks/chunk-XR2HMGAS.js";
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@@ -8,7 +8,7 @@ import "../chunks/chunk-CPMHA4W5.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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package/dist/layout/trimToWindow.js CHANGED
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- } from "../chunks/chunk-B5X2RLJG.js";
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+ } from "../chunks/chunk-3YBP46PB.js";
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  PathVisitsBuilder
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@@ -11,7 +11,7 @@ import {
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  overlapsWindow
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- import "../chunks/chunk-4XWZNPQ2.js";
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+ import "../chunks/chunk-2JL2JVZ2.js";
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package/dist/layout/tubeMapLayout.js CHANGED
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- } from "../chunks/chunk-RK3HRRCW.js";
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- import "../chunks/chunk-A7H753BA.js";
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- import "../chunks/chunk-C44YRP5F.js";
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- import "../chunks/chunk-IOWLTUEB.js";
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- import "../chunks/chunk-64FCX424.js";
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- import "../chunks/chunk-3GP3KT5L.js";
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- import "../chunks/chunk-NJGYLYU7.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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- import "../chunks/chunk-EIY2SKD3.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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- import "../chunks/chunk-PFRQBCGC.js";
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+ } from "../chunks/chunk-SIA75TEG.js";
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+ import "../chunks/chunk-SDI6BVG7.js";
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+ import "../chunks/chunk-5OJZV6YT.js";
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+ import "../chunks/chunk-BXE3SBBN.js";
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+ import "../chunks/chunk-G7SG4XMK.js";
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+ import "../chunks/chunk-BW2NMXRV.js";
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+ import "../chunks/chunk-7L7MN2OM.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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+ import "../chunks/chunk-T3H5ELLA.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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+ import "../chunks/chunk-ZPZ7GNBT.js";
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package/dist/layout/walkRowDraw.js CHANGED
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- } from "../chunks/chunk-TRGKMLXT.js";
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+ } from "../chunks/chunk-A7Q7RTWX.js";
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- import "../chunks/chunk-JOWKKQAL.js";
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- import "../chunks/chunk-WA5WNP6V.js";
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- import "../chunks/chunk-3GP3KT5L.js";
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- import "../chunks/chunk-CRCD3ODN.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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+ import "../chunks/chunk-OYCQVJYY.js";
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+ import "../chunks/chunk-BW2NMXRV.js";
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+ import "../chunks/chunk-ZANALBSX.js";
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- import "../chunks/chunk-EIY2SKD3.js";
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- import "../chunks/chunk-ZPZ7GNBT.js";
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- import "../chunks/chunk-PFRQBCGC.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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+ import "../chunks/chunk-T3H5ELLA.js";
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- import "../chunks/chunk-CGMSKIEO.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-DV5B5UU7.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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+ import "../chunks/chunk-VACK24HF.js";
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- import "../chunks/chunk-4XWZNPQ2.js";
55
+ import "../chunks/chunk-2JL2JVZ2.js";
55
56
  export {
57
+ ABRIDGED_GAP,
56
58
  BAR_PX,
57
59
  CALL_TICK,
58
60
  DISAGREES,
package/dist/layout/walkRowLayout.js CHANGED
@@ -5,18 +5,18 @@ import {
5
5
  walkRowLayout,
6
6
  walkRowLayoutOf,
7
7
  walkRowsExtent
8
- } from "../chunks/chunk-FWSERUJV.js";
9
- import "../chunks/chunk-IOWLTUEB.js";
10
- import "../chunks/chunk-64FCX424.js";
11
- import "../chunks/chunk-NJGYLYU7.js";
12
- import "../chunks/chunk-B5X2RLJG.js";
13
- import "../chunks/chunk-EIY2SKD3.js";
14
- import "../chunks/chunk-ZPZ7GNBT.js";
8
+ } from "../chunks/chunk-SENPGW4O.js";
9
+ import "../chunks/chunk-BXE3SBBN.js";
10
+ import "../chunks/chunk-G7SG4XMK.js";
11
+ import "../chunks/chunk-7L7MN2OM.js";
12
+ import "../chunks/chunk-LG2UK4MB.js";
13
+ import "../chunks/chunk-3YBP46PB.js";
15
14
  import "../chunks/chunk-CPMHA4W5.js";
15
+ import "../chunks/chunk-ZPZ7GNBT.js";
16
16
  import "../chunks/chunk-BSOZW3FC.js";
17
17
  import "../chunks/chunk-RJWPJCIB.js";
18
18
  import "../chunks/chunk-HOAIOEI7.js";
19
- import "../chunks/chunk-4XWZNPQ2.js";
19
+ import "../chunks/chunk-2JL2JVZ2.js";
20
20
  export {
21
21
  READOUT_ROOM,
22
22
  longestBar,
package/dist/layout/walkRowLinks.js CHANGED
@@ -3,7 +3,7 @@ import {
3
3
  sharedRowOrder,
4
4
  walkRowBlocks,
5
5
  walkRowLinks
6
- } from "../chunks/chunk-UFUSPK2A.js";
6
+ } from "../chunks/chunk-YYIU7P73.js";
7
7
  export {
8
8
  ribbonJoin,
9
9
  sharedRowOrder,
package/dist/layout/walkRowRuns.js CHANGED
@@ -3,15 +3,15 @@ import {
3
3
  runAt,
4
4
  walkRowRuns,
5
5
  walkRowsOf
6
- } from "../chunks/chunk-64FCX424.js";
7
- import "../chunks/chunk-NJGYLYU7.js";
8
- import "../chunks/chunk-B5X2RLJG.js";
9
- import "../chunks/chunk-EIY2SKD3.js";
6
+ } from "../chunks/chunk-G7SG4XMK.js";
7
+ import "../chunks/chunk-7L7MN2OM.js";
8
+ import "../chunks/chunk-LG2UK4MB.js";
9
+ import "../chunks/chunk-3YBP46PB.js";
10
10
  import "../chunks/chunk-ZPZ7GNBT.js";
11
11
  import "../chunks/chunk-BSOZW3FC.js";
12
12
  import "../chunks/chunk-RJWPJCIB.js";
13
13
  import "../chunks/chunk-HOAIOEI7.js";
14
- import "../chunks/chunk-4XWZNPQ2.js";
14
+ import "../chunks/chunk-2JL2JVZ2.js";
15
15
  export {
16
16
  referenceWalkName,
17
17
  runAt,
package/dist/layout/walkRows.js CHANGED
@@ -1,18 +1,18 @@
1
1
  import {
2
2
  filterSamples,
3
3
  walkRows
4
- } from "../chunks/chunk-IOWLTUEB.js";
4
+ } from "../chunks/chunk-BXE3SBBN.js";
5
5
  import {
6
6
  referenceWalkName
7
- } from "../chunks/chunk-64FCX424.js";
8
- import "../chunks/chunk-NJGYLYU7.js";
9
- import "../chunks/chunk-B5X2RLJG.js";
10
- import "../chunks/chunk-EIY2SKD3.js";
7
+ } from "../chunks/chunk-G7SG4XMK.js";
8
+ import "../chunks/chunk-7L7MN2OM.js";
9
+ import "../chunks/chunk-LG2UK4MB.js";
10
+ import "../chunks/chunk-3YBP46PB.js";
11
11
  import "../chunks/chunk-ZPZ7GNBT.js";
12
12
  import "../chunks/chunk-BSOZW3FC.js";
13
13
  import "../chunks/chunk-RJWPJCIB.js";
14
14
  import "../chunks/chunk-HOAIOEI7.js";
15
- import "../chunks/chunk-4XWZNPQ2.js";
15
+ import "../chunks/chunk-2JL2JVZ2.js";
16
16
  export {
17
17
  filterSamples,
18
18
  referenceWalkName,
package/dist/layout/walkStrip.js CHANGED
@@ -9,36 +9,36 @@ import {
9
9
  walkStripApplies,
10
10
  walkStripFrame,
11
11
  walkStripLabelsTree
12
- } from "../chunks/chunk-A32ZKSHN.js";
12
+ } from "../chunks/chunk-HELOUO6K.js";
13
13
  import {
14
14
  LABELLED_ROW_PX
15
- } from "../chunks/chunk-TRGKMLXT.js";
15
+ } from "../chunks/chunk-A7Q7RTWX.js";
16
16
  import "../chunks/chunk-H2H4Y3TV.js";
17
- import "../chunks/chunk-JOWKKQAL.js";
17
+ import "../chunks/chunk-JGHZ3N34.js";
18
18
  import "../chunks/chunk-G2FD7S3C.js";
19
19
  import "../chunks/chunk-GQZVR5DW.js";
20
- import "../chunks/chunk-WA5WNP6V.js";
21
- import "../chunks/chunk-FWSERUJV.js";
22
- import "../chunks/chunk-IOWLTUEB.js";
23
- import "../chunks/chunk-64FCX424.js";
24
- import "../chunks/chunk-3GP3KT5L.js";
25
- import "../chunks/chunk-CRCD3ODN.js";
26
- import "../chunks/chunk-NJGYLYU7.js";
27
- import "../chunks/chunk-B5X2RLJG.js";
20
+ import "../chunks/chunk-OYCQVJYY.js";
21
+ import "../chunks/chunk-SENPGW4O.js";
22
+ import "../chunks/chunk-BXE3SBBN.js";
23
+ import "../chunks/chunk-G7SG4XMK.js";
24
+ import "../chunks/chunk-BW2NMXRV.js";
25
+ import "../chunks/chunk-ZANALBSX.js";
26
+ import "../chunks/chunk-7L7MN2OM.js";
28
27
  import "../chunks/chunk-VX656OAZ.js";
29
- import "../chunks/chunk-EIY2SKD3.js";
30
- import "../chunks/chunk-ZPZ7GNBT.js";
31
- import "../chunks/chunk-PFRQBCGC.js";
28
+ import "../chunks/chunk-LG2UK4MB.js";
29
+ import "../chunks/chunk-T3H5ELLA.js";
32
30
  import "../chunks/chunk-HMXCN6PG.js";
33
31
  import "../chunks/chunk-AB35TJST.js";
34
- import "../chunks/chunk-BZFOFC4D.js";
35
- import "../chunks/chunk-CGMSKIEO.js";
36
- import "../chunks/chunk-UBQSRCWR.js";
32
+ import "../chunks/chunk-2VMKQKVO.js";
33
+ import "../chunks/chunk-DV5B5UU7.js";
34
+ import "../chunks/chunk-3YBP46PB.js";
35
+ import "../chunks/chunk-VACK24HF.js";
37
36
  import "../chunks/chunk-CPMHA4W5.js";
37
+ import "../chunks/chunk-ZPZ7GNBT.js";
38
38
  import "../chunks/chunk-BSOZW3FC.js";
39
39
  import "../chunks/chunk-RJWPJCIB.js";
40
40
  import "../chunks/chunk-HOAIOEI7.js";
41
- import "../chunks/chunk-4XWZNPQ2.js";
41
+ import "../chunks/chunk-2JL2JVZ2.js";
42
42
  export {
43
43
  LABELLED_ROW_PX,
44
44
  WALK_STRIP_CEILING_PX,
package/dist/layoutEngines.js CHANGED
@@ -3,7 +3,7 @@ import {
3
3
  LAYOUT_ENGINE_VALUES,
4
4
  isLayoutEngineKind,
5
5
  layoutEngine
6
- } from "./chunks/chunk-JMABOQWL.js";
6
+ } from "./chunks/chunk-CO6RGQAD.js";
7
7
  export {
8
8
  LAYOUT_ENGINES,
9
9
  LAYOUT_ENGINE_VALUES,
package/dist/layoutModes.js CHANGED
@@ -4,35 +4,35 @@ import {
4
4
  LAYOUT_MODE_VALUES,
5
5
  layoutModeByValue,
6
6
  modeUsesLayoutEngine
7
- } from "./chunks/chunk-5F4D35U5.js";
8
- import "./chunks/chunk-RK3HRRCW.js";
9
- import "./chunks/chunk-A7H753BA.js";
10
- import "./chunks/chunk-GJU6BJJA.js";
7
+ } from "./chunks/chunk-DD5EZG3T.js";
8
+ import "./chunks/chunk-SIA75TEG.js";
9
+ import "./chunks/chunk-SDI6BVG7.js";
10
+ import "./chunks/chunk-XR2HMGAS.js";
11
11
  import "./chunks/chunk-GJLZ2MKE.js";
12
12
  import "./chunks/chunk-MYLAJDKB.js";
13
- import "./chunks/chunk-C44YRP5F.js";
13
+ import "./chunks/chunk-5OJZV6YT.js";
14
14
  import "./chunks/chunk-UAFATXYA.js";
15
15
  import "./chunks/chunk-3GLG3ZLE.js";
16
- import "./chunks/chunk-FWSERUJV.js";
17
- import "./chunks/chunk-IOWLTUEB.js";
18
- import "./chunks/chunk-64FCX424.js";
19
- import "./chunks/chunk-3GP3KT5L.js";
20
- import "./chunks/chunk-NJGYLYU7.js";
21
- import "./chunks/chunk-B5X2RLJG.js";
16
+ import "./chunks/chunk-SENPGW4O.js";
17
+ import "./chunks/chunk-BXE3SBBN.js";
18
+ import "./chunks/chunk-G7SG4XMK.js";
19
+ import "./chunks/chunk-BW2NMXRV.js";
20
+ import "./chunks/chunk-7L7MN2OM.js";
22
21
  import "./chunks/chunk-VX656OAZ.js";
23
- import "./chunks/chunk-EIY2SKD3.js";
24
- import "./chunks/chunk-ZPZ7GNBT.js";
25
- import "./chunks/chunk-PFRQBCGC.js";
22
+ import "./chunks/chunk-LG2UK4MB.js";
23
+ import "./chunks/chunk-T3H5ELLA.js";
26
24
  import "./chunks/chunk-HMXCN6PG.js";
27
25
  import "./chunks/chunk-AB35TJST.js";
28
- import "./chunks/chunk-BZFOFC4D.js";
29
- import "./chunks/chunk-CGMSKIEO.js";
30
- import "./chunks/chunk-UBQSRCWR.js";
26
+ import "./chunks/chunk-2VMKQKVO.js";
27
+ import "./chunks/chunk-DV5B5UU7.js";
28
+ import "./chunks/chunk-3YBP46PB.js";
29
+ import "./chunks/chunk-VACK24HF.js";
31
30
  import "./chunks/chunk-CPMHA4W5.js";
31
+ import "./chunks/chunk-ZPZ7GNBT.js";
32
32
  import "./chunks/chunk-BSOZW3FC.js";
33
33
  import "./chunks/chunk-RJWPJCIB.js";
34
34
  import "./chunks/chunk-HOAIOEI7.js";
35
- import "./chunks/chunk-4XWZNPQ2.js";
35
+ import "./chunks/chunk-2JL2JVZ2.js";
36
36
  export {
37
37
  FORCE_LAYOUT_LABEL,
38
38
  LAYOUT_MODES,
package/dist/locus.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  formatLocus,
3
3
  parseLocus
4
- } from "./chunks/chunk-JOLLU34X.js";
4
+ } from "./chunks/chunk-PQIFYQVI.js";
5
5
  export {
6
6
  formatLocus,
7
7
  parseLocus
package/dist/nodeWidths.js CHANGED
@@ -3,12 +3,14 @@ import {
3
3
  maxNodeWidthPx,
4
4
  meanDepth,
5
5
  nodeInk,
6
- nodeWidthPx
7
- } from "./chunks/chunk-CRCD3ODN.js";
6
+ nodeWidthPx,
7
+ walkLaneWidthPx
8
+ } from "./chunks/chunk-ZANALBSX.js";
8
9
  export {
9
10
  NODE_WIDTHS,
10
11
  maxNodeWidthPx,
11
12
  meanDepth,
12
13
  nodeInk,
13
- nodeWidthPx
14
+ nodeWidthPx,
15
+ walkLaneWidthPx
14
16
  };
package/dist/pansn.js CHANGED
@@ -8,7 +8,7 @@ import {
8
8
  panSNSample,
9
9
  parsePanSN,
10
10
  resolvePanSNPrefix
11
- } from "./chunks/chunk-4XWZNPQ2.js";
11
+ } from "./chunks/chunk-2JL2JVZ2.js";
12
12
  export {
13
13
  assemblyByPanSNPrefix,
14
14
  isGenericSample,
package/dist/pathAnchoring.js CHANGED
@@ -3,19 +3,21 @@ import {
3
3
  anchorGraph,
4
4
  chooseReferencePath,
5
5
  pathOrigin,
6
+ referenceVisitStarts,
6
7
  surveyPaths,
7
8
  trimOrigins
8
- } from "./chunks/chunk-B5X2RLJG.js";
9
+ } from "./chunks/chunk-3YBP46PB.js";
9
10
  import "./chunks/chunk-ZPZ7GNBT.js";
10
11
  import "./chunks/chunk-BSOZW3FC.js";
11
12
  import "./chunks/chunk-RJWPJCIB.js";
12
13
  import "./chunks/chunk-HOAIOEI7.js";
13
- import "./chunks/chunk-4XWZNPQ2.js";
14
+ import "./chunks/chunk-2JL2JVZ2.js";
14
15
  export {
15
16
  anchorFromPaths,
16
17
  anchorGraph,
17
18
  chooseReferencePath,
18
19
  pathOrigin,
20
+ referenceVisitStarts,
19
21
  surveyPaths,
20
22
  trimOrigins
21
23
  };
package/dist/pathColors.js CHANGED
@@ -9,20 +9,20 @@ import {
9
9
  pathHueAt,
10
10
  pathLegend,
11
11
  walkLabelsOf
12
- } from "./chunks/chunk-3GP3KT5L.js";
13
- import "./chunks/chunk-B5X2RLJG.js";
14
- import "./chunks/chunk-ZPZ7GNBT.js";
15
- import "./chunks/chunk-PFRQBCGC.js";
12
+ } from "./chunks/chunk-BW2NMXRV.js";
13
+ import "./chunks/chunk-T3H5ELLA.js";
16
14
  import "./chunks/chunk-HMXCN6PG.js";
17
15
  import "./chunks/chunk-AB35TJST.js";
18
- import "./chunks/chunk-BZFOFC4D.js";
19
- import "./chunks/chunk-CGMSKIEO.js";
20
- import "./chunks/chunk-UBQSRCWR.js";
16
+ import "./chunks/chunk-2VMKQKVO.js";
17
+ import "./chunks/chunk-DV5B5UU7.js";
18
+ import "./chunks/chunk-3YBP46PB.js";
19
+ import "./chunks/chunk-VACK24HF.js";
21
20
  import "./chunks/chunk-CPMHA4W5.js";
21
+ import "./chunks/chunk-ZPZ7GNBT.js";
22
22
  import "./chunks/chunk-BSOZW3FC.js";
23
23
  import "./chunks/chunk-RJWPJCIB.js";
24
24
  import "./chunks/chunk-HOAIOEI7.js";
25
- import "./chunks/chunk-4XWZNPQ2.js";
25
+ import "./chunks/chunk-2JL2JVZ2.js";
26
26
  export {
27
27
  MAX_PATH_COLORS,
28
28
  PATH_LIGHTNESS,
package/dist/pipeline.js CHANGED
@@ -11,30 +11,30 @@ import {
11
11
  forceLayout,
12
12
  layoutExtent,
13
13
  loadGraph
14
- } from "./chunks/chunk-WG5D2H7X.js";
14
+ } from "./chunks/chunk-YER6TUXV.js";
15
15
  import "./chunks/chunk-OPPVSPEF.js";
16
16
  import "./chunks/chunk-3PZSBNLI.js";
17
17
  import "./chunks/chunk-CKUVEHSS.js";
18
18
  import "./chunks/chunk-VPE4AYP7.js";
19
- import "./chunks/chunk-FFHJGWDK.js";
19
+ import "./chunks/chunk-TUMJNAOL.js";
20
20
  import "./chunks/chunk-QYBZZI5H.js";
21
- import "./chunks/chunk-5I3K4R2G.js";
22
- import "./chunks/chunk-NJGYLYU7.js";
23
- import "./chunks/chunk-B5X2RLJG.js";
21
+ import "./chunks/chunk-CFXXFHRK.js";
22
+ import "./chunks/chunk-7L7MN2OM.js";
24
23
  import "./chunks/chunk-VX656OAZ.js";
25
- import "./chunks/chunk-DZR37KXT.js";
26
- import "./chunks/chunk-EIY2SKD3.js";
27
- import "./chunks/chunk-ZPZ7GNBT.js";
28
- import "./chunks/chunk-BZFOFC4D.js";
24
+ import "./chunks/chunk-VSSIYQYF.js";
25
+ import "./chunks/chunk-LG2UK4MB.js";
26
+ import "./chunks/chunk-2VMKQKVO.js";
29
27
  import "./chunks/chunk-HKYXWZQS.js";
30
28
  import "./chunks/chunk-34BOZKIE.js";
31
- import "./chunks/chunk-CGMSKIEO.js";
32
- import "./chunks/chunk-UBQSRCWR.js";
29
+ import "./chunks/chunk-DV5B5UU7.js";
30
+ import "./chunks/chunk-3YBP46PB.js";
31
+ import "./chunks/chunk-VACK24HF.js";
33
32
  import "./chunks/chunk-CPMHA4W5.js";
33
+ import "./chunks/chunk-ZPZ7GNBT.js";
34
34
  import "./chunks/chunk-BSOZW3FC.js";
35
35
  import "./chunks/chunk-RJWPJCIB.js";
36
36
  import "./chunks/chunk-HOAIOEI7.js";
37
- import "./chunks/chunk-4XWZNPQ2.js";
37
+ import "./chunks/chunk-2JL2JVZ2.js";
38
38
  export {
39
39
  ENGINE_DEFAULTS,
40
40
  FIT_PADDING,
package/dist/reference.js CHANGED
@@ -8,11 +8,11 @@ import {
8
8
  refNameBinding,
9
9
  referenceLabel,
10
10
  wellKnownSample
11
- } from "./chunks/chunk-234NFZS4.js";
11
+ } from "./chunks/chunk-5ORP7EFJ.js";
12
12
  import "./chunks/chunk-BSOZW3FC.js";
13
13
  import "./chunks/chunk-RJWPJCIB.js";
14
14
  import "./chunks/chunk-HOAIOEI7.js";
15
- import "./chunks/chunk-4XWZNPQ2.js";
15
+ import "./chunks/chunk-2JL2JVZ2.js";
16
16
  export {
17
17
  WELL_KNOWN_SAMPLES,
18
18
  assemblyWalk,
package/dist/referenceStrip.js CHANGED
@@ -7,27 +7,27 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-EGBBIXTG.js";
11
- import "./chunks/chunk-JOWKKQAL.js";
10
+ } from "./chunks/chunk-QCOVHLJO.js";
11
+ import "./chunks/chunk-JGHZ3N34.js";
12
12
  import "./chunks/chunk-G2FD7S3C.js";
13
13
  import "./chunks/chunk-GQZVR5DW.js";
14
- import "./chunks/chunk-WA5WNP6V.js";
15
- import "./chunks/chunk-3GP3KT5L.js";
16
- import "./chunks/chunk-CRCD3ODN.js";
17
- import "./chunks/chunk-B5X2RLJG.js";
14
+ import "./chunks/chunk-OYCQVJYY.js";
15
+ import "./chunks/chunk-BW2NMXRV.js";
16
+ import "./chunks/chunk-ZANALBSX.js";
18
17
  import "./chunks/chunk-VX656OAZ.js";
19
- import "./chunks/chunk-ZPZ7GNBT.js";
20
- import "./chunks/chunk-PFRQBCGC.js";
18
+ import "./chunks/chunk-T3H5ELLA.js";
21
19
  import "./chunks/chunk-HMXCN6PG.js";
22
20
  import "./chunks/chunk-AB35TJST.js";
23
- import "./chunks/chunk-BZFOFC4D.js";
24
- import "./chunks/chunk-CGMSKIEO.js";
25
- import "./chunks/chunk-UBQSRCWR.js";
21
+ import "./chunks/chunk-2VMKQKVO.js";
22
+ import "./chunks/chunk-DV5B5UU7.js";
23
+ import "./chunks/chunk-3YBP46PB.js";
24
+ import "./chunks/chunk-VACK24HF.js";
26
25
  import "./chunks/chunk-CPMHA4W5.js";
26
+ import "./chunks/chunk-ZPZ7GNBT.js";
27
27
  import "./chunks/chunk-BSOZW3FC.js";
28
28
  import "./chunks/chunk-RJWPJCIB.js";
29
29
  import "./chunks/chunk-HOAIOEI7.js";
30
- import "./chunks/chunk-4XWZNPQ2.js";
30
+ import "./chunks/chunk-2JL2JVZ2.js";
31
31
  export {
32
32
  REFERENCE_STRIP_PX,
33
33
  REFERENCE_STRIP_ZONE_PX,
package/dist/renderer/Canvas2DRenderer.js CHANGED
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  Canvas2DRenderer,
3
3
  arrowheadOutline
4
- } from "../chunks/chunk-EJRJAAN7.js";
4
+ } from "../chunks/chunk-4DMSPNYV.js";
5
5
  import "../chunks/chunk-RBCE2OQH.js";
6
6
  import "../chunks/chunk-G2FD7S3C.js";
7
7
  export {