@jbrowse/bandage-core 11.5.0 → 11.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (147) hide show
  1. package/dist/alleleProjection/projectAlleles.js +1 -1
  2. package/dist/bubbles/bubbleHalos.js +9 -6
  3. package/dist/bubbles/classifyBubble.js +8 -5
  4. package/dist/bubbles/popBubble.js +3 -3
  5. package/dist/bubbles/superbubbles.js +11 -11
  6. package/dist/chunks/{chunk-4XWZNPQ2.js → chunk-2JL2JVZ2.js} +1 -1
  7. package/dist/chunks/{chunk-BZFOFC4D.js → chunk-2VMKQKVO.js} +17 -7
  8. package/dist/chunks/{chunk-HN3WHMPJ.js → chunk-2XEAITWM.js} +15 -5
  9. package/dist/chunks/{chunk-7BTO7MZS.js → chunk-376YFQOY.js} +2 -2
  10. package/dist/chunks/{chunk-B5X2RLJG.js → chunk-3YBP46PB.js} +27 -2
  11. package/dist/chunks/{chunk-EJRJAAN7.js → chunk-4DMSPNYV.js} +47 -27
  12. package/dist/chunks/{chunk-OMUPUB4J.js → chunk-56L6R6D2.js} +2 -2
  13. package/dist/chunks/{chunk-C44YRP5F.js → chunk-5OJZV6YT.js} +3 -2
  14. package/dist/chunks/{chunk-234NFZS4.js → chunk-5ORP7EFJ.js} +1 -1
  15. package/dist/chunks/{chunk-XKZ56L5A.js → chunk-5ZQKQ24Z.js} +1 -1
  16. package/dist/chunks/{chunk-VD4MLYEK.js → chunk-65YCFVS4.js} +2 -2
  17. package/dist/chunks/{chunk-3VCKBSML.js → chunk-6YRSOL4K.js} +2 -2
  18. package/dist/chunks/{chunk-NJGYLYU7.js → chunk-7L7MN2OM.js} +6 -3
  19. package/dist/chunks/{chunk-TRGKMLXT.js → chunk-A7Q7RTWX.js} +26 -19
  20. package/dist/chunks/{chunk-77EGQQJU.js → chunk-BFUS3ENH.js} +2 -2
  21. package/dist/chunks/{chunk-TGUFT6KK.js → chunk-BLUEFYIR.js} +4 -1
  22. package/dist/chunks/{chunk-3GP3KT5L.js → chunk-BW2NMXRV.js} +5 -5
  23. package/dist/chunks/{chunk-IOWLTUEB.js → chunk-BXE3SBBN.js} +1 -1
  24. package/dist/chunks/{chunk-2E25TX4G.js → chunk-C6E6HXP5.js} +4 -4
  25. package/dist/chunks/{chunk-5I3K4R2G.js → chunk-CFXXFHRK.js} +2 -1
  26. package/dist/chunks/{chunk-JMABOQWL.js → chunk-CO6RGQAD.js} +1 -6
  27. package/dist/chunks/{chunk-5F4D35U5.js → chunk-DD5EZG3T.js} +3 -3
  28. package/dist/chunks/{chunk-AKLSY4GD.js → chunk-DTEXQ65J.js} +1 -1
  29. package/dist/chunks/{chunk-VQ7474EH.js → chunk-DUREQSOJ.js} +9 -8
  30. package/dist/chunks/{chunk-CGMSKIEO.js → chunk-DV5B5UU7.js} +55 -8
  31. package/dist/chunks/{chunk-KOJKFNCW.js → chunk-EH5JZETS.js} +26 -12
  32. package/dist/chunks/{chunk-G6UIYQZR.js → chunk-EQDQ7P4Y.js} +3 -2
  33. package/dist/chunks/{chunk-J3JODFDF.js → chunk-FNDNSDKW.js} +3 -3
  34. package/dist/chunks/{chunk-64FCX424.js → chunk-G7SG4XMK.js} +62 -14
  35. package/dist/chunks/{chunk-6EOB6ANX.js → chunk-GZ36HNPJ.js} +1 -1
  36. package/dist/chunks/{chunk-A32ZKSHN.js → chunk-HELOUO6K.js} +5 -5
  37. package/dist/chunks/{chunk-PQBALYSO.js → chunk-HERVZPWA.js} +16 -16
  38. package/dist/chunks/{chunk-3U3C4PRK.js → chunk-HMEAGAGC.js} +3 -3
  39. package/dist/chunks/{chunk-WC6HX6GJ.js → chunk-IJCSW6MV.js} +2 -2
  40. package/dist/chunks/{chunk-JOWKKQAL.js → chunk-JGHZ3N34.js} +14 -9
  41. package/dist/chunks/{chunk-PSCSZSVK.js → chunk-KA4F3N55.js} +4 -4
  42. package/dist/chunks/{chunk-SOMZGDVS.js → chunk-KJDERUQF.js} +1 -1
  43. package/dist/chunks/{chunk-E4ZM4OOJ.js → chunk-KZMSSPS6.js} +2 -2
  44. package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js} +2 -1
  45. package/dist/chunks/{chunk-PNMJFFNB.js → chunk-MHZTTLBU.js} +1 -1
  46. package/dist/chunks/{chunk-K5LDBMLX.js → chunk-NTKWT6XL.js} +1 -1
  47. package/dist/chunks/{chunk-WA5WNP6V.js → chunk-OYCQVJYY.js} +1 -1
  48. package/dist/chunks/{chunk-JOLLU34X.js → chunk-PQIFYQVI.js} +1 -1
  49. package/dist/chunks/{chunk-EGBBIXTG.js → chunk-QCOVHLJO.js} +1 -1
  50. package/dist/chunks/{chunk-A7H753BA.js → chunk-SDI6BVG7.js} +5 -6
  51. package/dist/chunks/{chunk-FWSERUJV.js → chunk-SENPGW4O.js} +1 -1
  52. package/dist/chunks/{chunk-RK3HRRCW.js → chunk-SIA75TEG.js} +6 -7
  53. package/dist/chunks/{chunk-A4JDEUAI.js → chunk-SNF2MIEF.js} +1 -1
  54. package/dist/chunks/{chunk-D4ZFRBB4.js → chunk-SVPR7IZO.js} +4 -4
  55. package/dist/chunks/{chunk-PFRQBCGC.js → chunk-T3H5ELLA.js} +4 -4
  56. package/dist/chunks/{chunk-FFHJGWDK.js → chunk-TUMJNAOL.js} +5 -5
  57. package/dist/chunks/{chunk-UBQSRCWR.js → chunk-VACK24HF.js} +43 -3
  58. package/dist/chunks/{chunk-HSVFCA2J.js → chunk-VO6FKNZE.js} +1 -1
  59. package/dist/chunks/{chunk-DZR37KXT.js → chunk-VSSIYQYF.js} +1 -1
  60. package/dist/chunks/{chunk-3BCVMZUT.js → chunk-WWIUC4N4.js} +10 -10
  61. package/dist/chunks/{chunk-GJU6BJJA.js → chunk-XR2HMGAS.js} +1 -1
  62. package/dist/chunks/{chunk-WG5D2H7X.js → chunk-YER6TUXV.js} +11 -11
  63. package/dist/chunks/{chunk-7EDGWT67.js → chunk-YEYQFNFQ.js} +1 -1
  64. package/dist/chunks/{chunk-UFUSPK2A.js → chunk-YYIU7P73.js} +4 -1
  65. package/dist/chunks/{chunk-CRCD3ODN.js → chunk-ZANALBSX.js} +11 -3
  66. package/dist/chunks/{chunk-WLR4KJVI.js → chunk-ZHZRAYEM.js} +1 -1
  67. package/dist/chunks/{chunk-NMWQUFPF.js → chunk-ZKSC7QVE.js} +3 -3
  68. package/dist/cli/figure.js +53 -48
  69. package/dist/cli/fold.js +13 -13
  70. package/dist/deletionEdges.js +5 -2
  71. package/dist/facetGrid.js +2 -2
  72. package/dist/figure.js +37 -37
  73. package/dist/figureData.js +39 -39
  74. package/dist/figureScene.js +27 -27
  75. package/dist/figureSettings.js +13 -13
  76. package/dist/foldVariants.js +2 -2
  77. package/dist/gaf/parseGaf.js +1 -1
  78. package/dist/gbzCut.js +6 -6
  79. package/dist/gbzWindow.js +5 -5
  80. package/dist/genes/backboneGenes.js +4 -4
  81. package/dist/genes/geneFiles.js +1 -1
  82. package/dist/genes/genePins.js +3 -3
  83. package/dist/gfa/gfaConverter.js +5 -5
  84. package/dist/gfa/gfaTables.js +2 -2
  85. package/dist/gfa/graphTables.js +3 -3
  86. package/dist/gfa/walkStops.js +1 -1
  87. package/dist/gfa-core/gfaParser.js +1 -1
  88. package/dist/gfa-core/index.js +1 -1
  89. package/dist/graphLabels.js +7 -4
  90. package/dist/index.js +64 -64
  91. package/dist/labelLayout.js +11 -8
  92. package/dist/layout/anchoredLayout.js +1 -1
  93. package/dist/layout/forceCache.js +13 -13
  94. package/dist/layout/mergeRuns.js +2 -2
  95. package/dist/layout/placeOffReference.js +1 -1
  96. package/dist/layout/sampleRowLayout.js +2 -2
  97. package/dist/layout/trimToWindow.js +2 -2
  98. package/dist/layout/tubeMapLayout.js +15 -15
  99. package/dist/layout/walkRowDraw.js +15 -13
  100. package/dist/layout/walkRowLayout.js +8 -8
  101. package/dist/layout/walkRowLinks.js +1 -1
  102. package/dist/layout/walkRowRuns.js +5 -5
  103. package/dist/layout/walkRows.js +6 -6
  104. package/dist/layout/walkStrip.js +18 -18
  105. package/dist/layoutEngines.js +1 -1
  106. package/dist/layoutModes.js +18 -18
  107. package/dist/locus.js +1 -1
  108. package/dist/nodeWidths.js +5 -3
  109. package/dist/pansn.js +1 -1
  110. package/dist/pathAnchoring.js +4 -2
  111. package/dist/pathColors.js +8 -8
  112. package/dist/pipeline.js +12 -12
  113. package/dist/reference.js +2 -2
  114. package/dist/referenceStrip.js +12 -12
  115. package/dist/renderer/Canvas2DRenderer.js +1 -1
  116. package/dist/renderer/GeometryBuilder.js +11 -11
  117. package/dist/tubeMap/axis.js +8 -5
  118. package/dist/tubeMap/bundle.js +16 -16
  119. package/dist/tubeMap/coarsen.js +16 -16
  120. package/dist/tubeMap/deviations.js +19 -19
  121. package/dist/tubeMap/draw.js +11 -9
  122. package/dist/tubeMap/genes.js +9 -6
  123. package/dist/tubeMap/nodeColors.js +12 -12
  124. package/dist/tubeMap/reads.js +4 -4
  125. package/dist/types/figureData.d.ts +12 -0
  126. package/dist/types/gaf/parseGaf.d.ts +1 -1
  127. package/dist/types/gfa/graphTables.d.ts +2 -0
  128. package/dist/types/gfa/walkStops.d.ts +1 -1
  129. package/dist/types/layout/walkRowDraw.d.ts +2 -1
  130. package/dist/types/layout/walkRows.d.ts +1 -0
  131. package/dist/types/nodeWidths.d.ts +2 -1
  132. package/dist/types/pathAnchoring.d.ts +2 -0
  133. package/dist/types/renderer/Canvas2DRenderer.d.ts +2 -0
  134. package/dist/types/tubeMap/reads.d.ts +0 -1
  135. package/dist/types/types.d.ts +4 -0
  136. package/dist/types/util/geometry.d.ts +7 -1
  137. package/dist/types/version.d.ts +1 -1
  138. package/dist/util/SpatialIndex.js +7 -4
  139. package/dist/util/edgeCurves.js +6 -3
  140. package/dist/util/geometry.js +1 -1
  141. package/dist/util/hitDetection.js +8 -5
  142. package/dist/version.js +1 -1
  143. package/dist/viewport.js +13 -13
  144. package/dist/walkEncoding.js +12 -12
  145. package/dist/walkHighlight.js +14 -14
  146. package/dist/walkKey.js +9 -6
  147. package/package.json +1 -1
@@ -1,31 +1,31 @@
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  import {
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  FIGURE_DEFAULTS,
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  figureSpecSettings
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- } from "./chunks/chunk-K5LDBMLX.js";
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- import "./chunks/chunk-WG5D2H7X.js";
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+ } from "./chunks/chunk-NTKWT6XL.js";
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+ import "./chunks/chunk-YER6TUXV.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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  import "./chunks/chunk-3PZSBNLI.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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- import "./chunks/chunk-FFHJGWDK.js";
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+ import "./chunks/chunk-TUMJNAOL.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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- import "./chunks/chunk-5I3K4R2G.js";
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- import "./chunks/chunk-NJGYLYU7.js";
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- import "./chunks/chunk-B5X2RLJG.js";
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+ import "./chunks/chunk-CFXXFHRK.js";
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+ import "./chunks/chunk-7L7MN2OM.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-DZR37KXT.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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- import "./chunks/chunk-ZPZ7GNBT.js";
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- import "./chunks/chunk-BZFOFC4D.js";
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+ import "./chunks/chunk-VSSIYQYF.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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+ import "./chunks/chunk-2VMKQKVO.js";
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  import "./chunks/chunk-HKYXWZQS.js";
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  import "./chunks/chunk-34BOZKIE.js";
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- import "./chunks/chunk-CGMSKIEO.js";
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- import "./chunks/chunk-UBQSRCWR.js";
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+ import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-3YBP46PB.js";
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+ import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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+ import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
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  import "./chunks/chunk-RJWPJCIB.js";
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  import "./chunks/chunk-HOAIOEI7.js";
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- import "./chunks/chunk-4XWZNPQ2.js";
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+ import "./chunks/chunk-2JL2JVZ2.js";
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  export {
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  FIGURE_DEFAULTS,
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  figureSpecSettings
@@ -1,7 +1,7 @@
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  import {
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  foldVariants
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- } from "./chunks/chunk-SOMZGDVS.js";
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- import "./chunks/chunk-UBQSRCWR.js";
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+ } from "./chunks/chunk-KJDERUQF.js";
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+ import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-BSOZW3FC.js";
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  import "./chunks/chunk-RJWPJCIB.js";
@@ -3,7 +3,7 @@ import {
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  parseGaf,
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  parseGafLine,
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  parseGafPath
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- } from "../chunks/chunk-C44YRP5F.js";
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+ } from "../chunks/chunk-5OJZV6YT.js";
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  export {
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  parseCs,
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package/dist/gbzCut.js CHANGED
@@ -5,17 +5,17 @@ import {
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  haplotypeIndexBeside,
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  openGbz,
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  parseRegion
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- } from "./chunks/chunk-J3JODFDF.js";
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- import "./chunks/chunk-NMWQUFPF.js";
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+ } from "./chunks/chunk-FNDNSDKW.js";
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+ import "./chunks/chunk-ZKSC7QVE.js";
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  import "./chunks/chunk-HNWJ4B7S.js";
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- import "./chunks/chunk-234NFZS4.js";
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- import "./chunks/chunk-DZR37KXT.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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+ import "./chunks/chunk-5ORP7EFJ.js";
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+ import "./chunks/chunk-VSSIYQYF.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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- import "./chunks/chunk-4XWZNPQ2.js";
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+ import "./chunks/chunk-2JL2JVZ2.js";
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package/dist/gbzWindow.js CHANGED
@@ -12,16 +12,16 @@ import {
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  referenceSamplesOf,
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- } from "./chunks/chunk-NMWQUFPF.js";
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+ } from "./chunks/chunk-ZKSC7QVE.js";
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  import "./chunks/chunk-HNWJ4B7S.js";
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- import "./chunks/chunk-234NFZS4.js";
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- import "./chunks/chunk-DZR37KXT.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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+ import "./chunks/chunk-5ORP7EFJ.js";
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+ import "./chunks/chunk-VSSIYQYF.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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+ import "./chunks/chunk-2JL2JVZ2.js";
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  export {
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@@ -1,12 +1,12 @@
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  import {
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- } from "../chunks/chunk-7BTO7MZS.js";
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- import "../chunks/chunk-G6UIYQZR.js";
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- import "../chunks/chunk-234NFZS4.js";
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+ } from "../chunks/chunk-376YFQOY.js";
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+ import "../chunks/chunk-EQDQ7P4Y.js";
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+ import "../chunks/chunk-5ORP7EFJ.js";
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@@ -4,7 +4,7 @@ import {
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  genesFromText,
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- } from "../chunks/chunk-G6UIYQZR.js";
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+ } from "../chunks/chunk-EQDQ7P4Y.js";
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- } from "../chunks/chunk-77EGQQJU.js";
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- import "../chunks/chunk-BZFOFC4D.js";
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- import "../chunks/chunk-UBQSRCWR.js";
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+ } from "../chunks/chunk-BFUS3ENH.js";
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+ import "../chunks/chunk-2VMKQKVO.js";
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+ import "../chunks/chunk-VACK24HF.js";
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- } from "../chunks/chunk-FFHJGWDK.js";
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+ } from "../chunks/chunk-TUMJNAOL.js";
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- import "../chunks/chunk-5I3K4R2G.js";
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- import "../chunks/chunk-B5X2RLJG.js";
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- import "../chunks/chunk-EIY2SKD3.js";
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+ import "../chunks/chunk-CFXXFHRK.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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+ import "../chunks/chunk-3YBP46PB.js";
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@@ -1,7 +1,7 @@
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- import "../chunks/chunk-EIY2SKD3.js";
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+ } from "../chunks/chunk-VSSIYQYF.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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@@ -3,10 +3,10 @@ import {
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- } from "../chunks/chunk-NJGYLYU7.js";
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- import "../chunks/chunk-EIY2SKD3.js";
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+ } from "../chunks/chunk-7L7MN2OM.js";
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+ import "../chunks/chunk-LG2UK4MB.js";
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+ } from "../chunks/chunk-LG2UK4MB.js";
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+ } from "../chunks/chunk-CFXXFHRK.js";
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@@ -2,7 +2,7 @@ import "../chunks/chunk-QYBZZI5H.js";
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3
  parseGFA,
4
4
  stableCoordinate
5
- } from "../chunks/chunk-5I3K4R2G.js";
5
+ } from "../chunks/chunk-CFXXFHRK.js";
6
6
  export {
7
7
  parseGFA,
8
8
  stableCoordinate
@@ -6,16 +6,19 @@ import {
6
6
  placeSizeLabels,
7
7
  rowLabelBox,
8
8
  sizeLabelCandidates
9
- } from "./chunks/chunk-PFRQBCGC.js";
9
+ } from "./chunks/chunk-T3H5ELLA.js";
10
10
  import "./chunks/chunk-HMXCN6PG.js";
11
11
  import "./chunks/chunk-AB35TJST.js";
12
- import "./chunks/chunk-BZFOFC4D.js";
13
- import "./chunks/chunk-CGMSKIEO.js";
14
- import "./chunks/chunk-UBQSRCWR.js";
12
+ import "./chunks/chunk-2VMKQKVO.js";
13
+ import "./chunks/chunk-DV5B5UU7.js";
14
+ import "./chunks/chunk-3YBP46PB.js";
15
+ import "./chunks/chunk-VACK24HF.js";
15
16
  import "./chunks/chunk-CPMHA4W5.js";
17
+ import "./chunks/chunk-ZPZ7GNBT.js";
16
18
  import "./chunks/chunk-BSOZW3FC.js";
17
19
  import "./chunks/chunk-RJWPJCIB.js";
18
20
  import "./chunks/chunk-HOAIOEI7.js";
21
+ import "./chunks/chunk-2JL2JVZ2.js";
19
22
  export {
20
23
  formatBp,
21
24
  graphLabels,
package/dist/index.js CHANGED
@@ -4,13 +4,13 @@ import {
4
4
  import {
5
5
  drawTubeMapGenes,
6
6
  tubeMapGenes
7
- } from "./chunks/chunk-6EOB6ANX.js";
7
+ } from "./chunks/chunk-GZ36HNPJ.js";
8
8
  import {
9
9
  tubeMapNodeColors
10
- } from "./chunks/chunk-7EDGWT67.js";
10
+ } from "./chunks/chunk-YEYQFNFQ.js";
11
11
  import {
12
12
  bundleRoutes
13
- } from "./chunks/chunk-VD4MLYEK.js";
13
+ } from "./chunks/chunk-65YCFVS4.js";
14
14
  import {
15
15
  connectorAt,
16
16
  drawLitConnector,
@@ -22,14 +22,14 @@ import {
22
22
  referenceBoxes,
23
23
  rulerBoxes,
24
24
  tubeX
25
- } from "./chunks/chunk-HSVFCA2J.js";
25
+ } from "./chunks/chunk-VO6FKNZE.js";
26
26
  import {
27
27
  drawTubeMap,
28
28
  drawTubeMapHighlight,
29
29
  tubeMapMismatchAt,
30
30
  tubeMapPicture,
31
31
  tubeMapTrackAt
32
- } from "./chunks/chunk-3U3C4PRK.js";
32
+ } from "./chunks/chunk-HMEAGAGC.js";
33
33
  import "./chunks/chunk-BX4AUMZE.js";
34
34
  import {
35
35
  tubeMapFrame,
@@ -44,17 +44,17 @@ import {
44
44
  sharedRowOrder,
45
45
  walkRowBlocks,
46
46
  walkRowLinks
47
- } from "./chunks/chunk-UFUSPK2A.js";
47
+ } from "./chunks/chunk-YYIU7P73.js";
48
48
  import {
49
49
  createForceLayoutCache
50
- } from "./chunks/chunk-AKLSY4GD.js";
50
+ } from "./chunks/chunk-DTEXQ65J.js";
51
51
  import {
52
52
  graphBubbles,
53
53
  superbubblesFromGraph
54
- } from "./chunks/chunk-2E25TX4G.js";
54
+ } from "./chunks/chunk-C6E6HXP5.js";
55
55
  import {
56
56
  bubbleHalos
57
- } from "./chunks/chunk-E4ZM4OOJ.js";
57
+ } from "./chunks/chunk-KZMSSPS6.js";
58
58
  import {
59
59
  bubblesFromGraph
60
60
  } from "./chunks/chunk-RFG42VIO.js";
@@ -63,40 +63,40 @@ import {
63
63
  BUBBLE_KIND_NAMES,
64
64
  bubbleSegmentIds,
65
65
  classifyBubble
66
- } from "./chunks/chunk-A4JDEUAI.js";
66
+ } from "./chunks/chunk-SNF2MIEF.js";
67
67
  import "./chunks/chunk-FX4RDMDN.js";
68
68
  import {
69
69
  bubbleSubgraph
70
- } from "./chunks/chunk-PNMJFFNB.js";
70
+ } from "./chunks/chunk-MHZTTLBU.js";
71
71
  import {
72
72
  backboneGenes
73
- } from "./chunks/chunk-7BTO7MZS.js";
73
+ } from "./chunks/chunk-376YFQOY.js";
74
74
  import {
75
75
  genesFromBed,
76
76
  genesFromGff3Lines,
77
77
  genesFromText,
78
78
  mergeOverlappingByName
79
- } from "./chunks/chunk-G6UIYQZR.js";
79
+ } from "./chunks/chunk-EQDQ7P4Y.js";
80
80
  import {
81
81
  REFERENCE_STRIP_ZONE_PX,
82
82
  drawReferenceStrip,
83
83
  referenceStripBlocks,
84
84
  stripBlockAt
85
- } from "./chunks/chunk-EGBBIXTG.js";
85
+ } from "./chunks/chunk-QCOVHLJO.js";
86
86
  import {
87
87
  LAYOUT_QUALITIES
88
88
  } from "./chunks/chunk-K5SIJGAE.js";
89
89
  import {
90
90
  formatLocus,
91
91
  parseLocus
92
- } from "./chunks/chunk-JOLLU34X.js";
92
+ } from "./chunks/chunk-PQIFYQVI.js";
93
93
  import {
94
94
  edgeHoverText,
95
95
  regionLabel
96
96
  } from "./chunks/chunk-AZFVORTC.js";
97
97
  import {
98
98
  figureSvg
99
- } from "./chunks/chunk-PQBALYSO.js";
99
+ } from "./chunks/chunk-HERVZPWA.js";
100
100
  import {
101
101
  WALK_STRIP_CEILING_PX,
102
102
  cutsWholeWalks,
@@ -108,10 +108,10 @@ import {
108
108
  walkStripApplies,
109
109
  walkStripFrame,
110
110
  walkStripLabelsTree
111
- } from "./chunks/chunk-A32ZKSHN.js";
111
+ } from "./chunks/chunk-HELOUO6K.js";
112
112
  import {
113
113
  Canvas2DRenderer
114
- } from "./chunks/chunk-EJRJAAN7.js";
114
+ } from "./chunks/chunk-4DMSPNYV.js";
115
115
  import {
116
116
  getDpr
117
117
  } from "./chunks/chunk-RBCE2OQH.js";
@@ -145,7 +145,7 @@ import {
145
145
  walkRowsKey,
146
146
  walkRowsKeyTree,
147
147
  walkRowsTree
148
- } from "./chunks/chunk-TRGKMLXT.js";
148
+ } from "./chunks/chunk-A7Q7RTWX.js";
149
149
  import {
150
150
  EXON_COLOR,
151
151
  exonOutlineTree,
@@ -156,12 +156,12 @@ import {
156
156
  LEGEND_INSET_PX,
157
157
  geneCoverageNote,
158
158
  layoutLabels
159
- } from "./chunks/chunk-PSCSZSVK.js";
159
+ } from "./chunks/chunk-KA4F3N55.js";
160
160
  import {
161
161
  findHoveredEdge,
162
162
  findHoveredNode
163
- } from "./chunks/chunk-OMUPUB4J.js";
164
- import "./chunks/chunk-3VCKBSML.js";
163
+ } from "./chunks/chunk-56L6R6D2.js";
164
+ import "./chunks/chunk-6YRSOL4K.js";
165
165
  import {
166
166
  el,
167
167
  serializeEl
@@ -169,23 +169,23 @@ import {
169
169
  import {
170
170
  figureData,
171
171
  gfaFigureData
172
- } from "./chunks/chunk-KOJKFNCW.js";
172
+ } from "./chunks/chunk-EH5JZETS.js";
173
173
  import {
174
174
  LAYOUT_ENGINES,
175
175
  layoutEngine
176
- } from "./chunks/chunk-JMABOQWL.js";
176
+ } from "./chunks/chunk-CO6RGQAD.js";
177
177
  import {
178
178
  FORCE_LAYOUT_LABEL,
179
179
  LAYOUT_MODES,
180
180
  layoutModeByValue,
181
181
  modeUsesLayoutEngine
182
- } from "./chunks/chunk-5F4D35U5.js";
183
- import "./chunks/chunk-RK3HRRCW.js";
184
- import "./chunks/chunk-A7H753BA.js";
185
- import "./chunks/chunk-GJU6BJJA.js";
182
+ } from "./chunks/chunk-DD5EZG3T.js";
183
+ import "./chunks/chunk-SIA75TEG.js";
184
+ import "./chunks/chunk-SDI6BVG7.js";
185
+ import "./chunks/chunk-XR2HMGAS.js";
186
186
  import "./chunks/chunk-GJLZ2MKE.js";
187
187
  import "./chunks/chunk-MYLAJDKB.js";
188
- import "./chunks/chunk-C44YRP5F.js";
188
+ import "./chunks/chunk-5OJZV6YT.js";
189
189
  import "./chunks/chunk-UAFATXYA.js";
190
190
  import "./chunks/chunk-3GLG3ZLE.js";
191
191
  import {
@@ -193,7 +193,7 @@ import {
193
193
  cutGbzRegion,
194
194
  openGbz,
195
195
  parseRegion
196
- } from "./chunks/chunk-J3JODFDF.js";
196
+ } from "./chunks/chunk-FNDNSDKW.js";
197
197
  import {
198
198
  compactTables,
199
199
  cutWindowGFA,
@@ -202,14 +202,14 @@ import {
202
202
  referencePathQuery,
203
203
  referenceSamplesOf,
204
204
  resolveReferenceSample
205
- } from "./chunks/chunk-NMWQUFPF.js";
205
+ } from "./chunks/chunk-ZKSC7QVE.js";
206
206
  import "./chunks/chunk-HNWJ4B7S.js";
207
207
  import {
208
208
  genePins
209
- } from "./chunks/chunk-77EGQQJU.js";
209
+ } from "./chunks/chunk-BFUS3ENH.js";
210
210
  import {
211
211
  version
212
- } from "./chunks/chunk-WLR4KJVI.js";
212
+ } from "./chunks/chunk-ZHZRAYEM.js";
213
213
  import {
214
214
  axisScaleOf,
215
215
  contains,
@@ -217,8 +217,8 @@ import {
217
217
  screenToLayout,
218
218
  viewportOf,
219
219
  zoomAbout
220
- } from "./chunks/chunk-XKZ56L5A.js";
221
- import "./chunks/chunk-3BCVMZUT.js";
220
+ } from "./chunks/chunk-5ZQKQ24Z.js";
221
+ import "./chunks/chunk-WWIUC4N4.js";
222
222
  import {
223
223
  layoutGeometryInputs
224
224
  } from "./chunks/chunk-LOCJN3BZ.js";
@@ -226,7 +226,7 @@ import {
226
226
  facetLifts,
227
227
  walkHighlight,
228
228
  walkLift
229
- } from "./chunks/chunk-VQ7474EH.js";
229
+ } from "./chunks/chunk-DUREQSOJ.js";
230
230
  import {
231
231
  WALK_FIELDS,
232
232
  WALK_SCHEMES,
@@ -234,17 +234,17 @@ import {
234
234
  encodingSwatchCss,
235
235
  resolveEncoding,
236
236
  schemeCss
237
- } from "./chunks/chunk-HN3WHMPJ.js";
237
+ } from "./chunks/chunk-2XEAITWM.js";
238
238
  import {
239
239
  buildGeometry,
240
240
  computeReferenceRamp
241
- } from "./chunks/chunk-JOWKKQAL.js";
241
+ } from "./chunks/chunk-JGHZ3N34.js";
242
242
  import "./chunks/chunk-G2FD7S3C.js";
243
243
  import {
244
244
  rangeText,
245
245
  walkKey,
246
246
  walkPosition
247
- } from "./chunks/chunk-D4ZFRBB4.js";
247
+ } from "./chunks/chunk-SVPR7IZO.js";
248
248
  import {
249
249
  RAMP_GRADIENT_CSS,
250
250
  REFERENCE_RAMP_MAX_HUE,
@@ -252,37 +252,37 @@ import {
252
252
  rampHueCss,
253
253
  rampStops
254
254
  } from "./chunks/chunk-GQZVR5DW.js";
255
- import "./chunks/chunk-WA5WNP6V.js";
255
+ import "./chunks/chunk-OYCQVJYY.js";
256
256
  import {
257
257
  walkRowLabels,
258
258
  walkRowLayoutOf,
259
259
  walkRowsExtent
260
- } from "./chunks/chunk-FWSERUJV.js";
260
+ } from "./chunks/chunk-SENPGW4O.js";
261
261
  import {
262
262
  filterSamples,
263
263
  walkRows
264
- } from "./chunks/chunk-IOWLTUEB.js";
264
+ } from "./chunks/chunk-BXE3SBBN.js";
265
265
  import {
266
266
  runAt,
267
267
  walkRowRuns,
268
268
  walkRowsOf
269
- } from "./chunks/chunk-64FCX424.js";
269
+ } from "./chunks/chunk-G7SG4XMK.js";
270
270
  import {
271
271
  pathColorsLegible,
272
272
  pathLegend,
273
273
  walkLabelsOf
274
- } from "./chunks/chunk-3GP3KT5L.js";
274
+ } from "./chunks/chunk-BW2NMXRV.js";
275
275
  import {
276
276
  NODE_WIDTHS,
277
277
  maxNodeWidthPx,
278
278
  meanDepth,
279
279
  nodeInk,
280
280
  nodeWidthPx
281
- } from "./chunks/chunk-CRCD3ODN.js";
281
+ } from "./chunks/chunk-ZANALBSX.js";
282
282
  import {
283
283
  FIGURE_DEFAULTS,
284
284
  figureSpecSettings
285
- } from "./chunks/chunk-K5LDBMLX.js";
285
+ } from "./chunks/chunk-NTKWT6XL.js";
286
286
  import {
287
287
  ENGINE_DEFAULTS,
288
288
  FIT_PADDING,
@@ -295,19 +295,18 @@ import {
295
295
  forceLayout,
296
296
  layoutExtent,
297
297
  loadGraph
298
- } from "./chunks/chunk-WG5D2H7X.js";
298
+ } from "./chunks/chunk-YER6TUXV.js";
299
299
  import "./chunks/chunk-OPPVSPEF.js";
300
300
  import "./chunks/chunk-3PZSBNLI.js";
301
301
  import "./chunks/chunk-CKUVEHSS.js";
302
302
  import "./chunks/chunk-VPE4AYP7.js";
303
- import "./chunks/chunk-FFHJGWDK.js";
303
+ import "./chunks/chunk-TUMJNAOL.js";
304
304
  import "./chunks/chunk-QYBZZI5H.js";
305
- import "./chunks/chunk-5I3K4R2G.js";
305
+ import "./chunks/chunk-CFXXFHRK.js";
306
306
  import {
307
307
  graphFromTables,
308
308
  graphTablesGFA
309
- } from "./chunks/chunk-NJGYLYU7.js";
310
- import "./chunks/chunk-B5X2RLJG.js";
309
+ } from "./chunks/chunk-7L7MN2OM.js";
311
310
  import "./chunks/chunk-VX656OAZ.js";
312
311
  import {
313
312
  WELL_KNOWN_SAMPLES,
@@ -318,10 +317,10 @@ import {
318
317
  refNameBinding,
319
318
  referenceLabel,
320
319
  wellKnownSample
321
- } from "./chunks/chunk-234NFZS4.js";
320
+ } from "./chunks/chunk-5ORP7EFJ.js";
322
321
  import {
323
322
  gfaTables
324
- } from "./chunks/chunk-DZR37KXT.js";
323
+ } from "./chunks/chunk-VSSIYQYF.js";
325
324
  import {
326
325
  END_STOP_TAG,
327
326
  GAP_CAUSE_TEXT,
@@ -330,21 +329,17 @@ import {
330
329
  gapParts,
331
330
  parseStopTag,
332
331
  stopTag
333
- } from "./chunks/chunk-EIY2SKD3.js";
334
- import {
335
- PathVisits,
336
- PathVisitsBuilder
337
- } from "./chunks/chunk-ZPZ7GNBT.js";
332
+ } from "./chunks/chunk-LG2UK4MB.js";
338
333
  import {
339
334
  formatBp
340
- } from "./chunks/chunk-PFRQBCGC.js";
335
+ } from "./chunks/chunk-T3H5ELLA.js";
341
336
  import "./chunks/chunk-HMXCN6PG.js";
342
337
  import {
343
338
  LABEL_CHAR_PX,
344
339
  LABEL_PAD,
345
340
  LABEL_PX
346
341
  } from "./chunks/chunk-AB35TJST.js";
347
- import "./chunks/chunk-BZFOFC4D.js";
342
+ import "./chunks/chunk-2VMKQKVO.js";
348
343
  import {
349
344
  BUBBLE_SPREADS
350
345
  } from "./chunks/chunk-HKYXWZQS.js";
@@ -356,11 +351,16 @@ import {
356
351
  import {
357
352
  deletionDrawing,
358
353
  deletionEdges
359
- } from "./chunks/chunk-CGMSKIEO.js";
360
- import "./chunks/chunk-UBQSRCWR.js";
354
+ } from "./chunks/chunk-DV5B5UU7.js";
355
+ import "./chunks/chunk-3YBP46PB.js";
356
+ import "./chunks/chunk-VACK24HF.js";
361
357
  import {
362
358
  ROW_HEIGHT_PX
363
359
  } from "./chunks/chunk-CPMHA4W5.js";
360
+ import {
361
+ PathVisits,
362
+ PathVisitsBuilder
363
+ } from "./chunks/chunk-ZPZ7GNBT.js";
364
364
  import "./chunks/chunk-BSOZW3FC.js";
365
365
  import "./chunks/chunk-RJWPJCIB.js";
366
366
  import "./chunks/chunk-HOAIOEI7.js";
@@ -372,12 +372,12 @@ import {
372
372
  facetCells,
373
373
  facetGrid,
374
374
  facetSettingOf
375
- } from "./chunks/chunk-TGUFT6KK.js";
375
+ } from "./chunks/chunk-BLUEFYIR.js";
376
376
  import {
377
377
  panSNContig,
378
378
  panSNHaplotype,
379
379
  panSNSample
380
- } from "./chunks/chunk-4XWZNPQ2.js";
380
+ } from "./chunks/chunk-2JL2JVZ2.js";
381
381
 
382
382
  // src/index.ts
383
383
  import { stressLayout } from "@jbrowse/graph-stress-layout";
@@ -4,20 +4,23 @@ import {
4
4
  geneCoverageNote,
5
5
  geneLabelCandidates,
6
6
  layoutLabels
7
- } from "./chunks/chunk-PSCSZSVK.js";
8
- import "./chunks/chunk-OMUPUB4J.js";
9
- import "./chunks/chunk-3VCKBSML.js";
10
- import "./chunks/chunk-WA5WNP6V.js";
11
- import "./chunks/chunk-PFRQBCGC.js";
7
+ } from "./chunks/chunk-KA4F3N55.js";
8
+ import "./chunks/chunk-56L6R6D2.js";
9
+ import "./chunks/chunk-6YRSOL4K.js";
10
+ import "./chunks/chunk-OYCQVJYY.js";
11
+ import "./chunks/chunk-T3H5ELLA.js";
12
12
  import "./chunks/chunk-HMXCN6PG.js";
13
13
  import "./chunks/chunk-AB35TJST.js";
14
- import "./chunks/chunk-BZFOFC4D.js";
15
- import "./chunks/chunk-CGMSKIEO.js";
16
- import "./chunks/chunk-UBQSRCWR.js";
14
+ import "./chunks/chunk-2VMKQKVO.js";
15
+ import "./chunks/chunk-DV5B5UU7.js";
16
+ import "./chunks/chunk-3YBP46PB.js";
17
+ import "./chunks/chunk-VACK24HF.js";
17
18
  import "./chunks/chunk-CPMHA4W5.js";
19
+ import "./chunks/chunk-ZPZ7GNBT.js";
18
20
  import "./chunks/chunk-BSOZW3FC.js";
19
21
  import "./chunks/chunk-RJWPJCIB.js";
20
22
  import "./chunks/chunk-HOAIOEI7.js";
23
+ import "./chunks/chunk-2JL2JVZ2.js";
21
24
  export {
22
25
  HALO_FACTOR,
23
26
  LEGEND_INSET_PX,