@jbrowse/bandage-core 11.11.0 → 11.12.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/alleleProjection/projectAlleles.js +2 -2
- package/dist/bubbles/bubblesFromGraph.js +3 -3
- package/dist/bubbles/superbubbles.js +4 -4
- package/dist/chunks/{chunk-JVT3XTKN.js → chunk-2AVTTUP2.js} +1 -1
- package/dist/chunks/{chunk-XR2HMGAS.js → chunk-3JDGPLCL.js} +1 -1
- package/dist/chunks/{chunk-CKUVEHSS.js → chunk-4FRX2SPT.js} +1 -1
- package/dist/chunks/{chunk-PYK4JKYW.js → chunk-5SW3PTHO.js} +1 -1
- package/dist/chunks/{chunk-7553WCL3.js → chunk-5UIYXKTA.js} +13 -8
- package/dist/chunks/{chunk-R36RBFNH.js → chunk-6ROK45LO.js} +4 -4
- package/dist/chunks/{chunk-SVP2CQTA.js → chunk-A6ABMJR5.js} +1 -1
- package/dist/chunks/{chunk-GJLZ2MKE.js → chunk-CNWAVRLF.js} +1 -1
- package/dist/chunks/{chunk-J7RNXBXA.js → chunk-DOCI5O5R.js} +1 -1
- package/dist/chunks/{chunk-GXCMBPC6.js → chunk-EH5OIV2E.js} +1 -1
- package/dist/chunks/{chunk-2A6Z2DHF.js → chunk-EIMRD6L7.js} +1 -1
- package/dist/chunks/{chunk-LNLYK3Y5.js → chunk-GGFR4SYO.js} +1 -1
- package/dist/chunks/{chunk-EB4Q35QD.js → chunk-JQYK6GVJ.js} +1 -1
- package/dist/chunks/{chunk-VX656OAZ.js → chunk-L4DBSRA2.js} +20 -1
- package/dist/chunks/{chunk-MYLAJDKB.js → chunk-LLTISBAA.js} +2 -2
- package/dist/chunks/{chunk-3DHGSHC3.js → chunk-OKPSS5PG.js} +1 -1
- package/dist/chunks/{chunk-JPT44REW.js → chunk-Q2AMKXAX.js} +8 -8
- package/dist/chunks/{chunk-UAFATXYA.js → chunk-Q7OFBTBW.js} +1 -1
- package/dist/chunks/{chunk-F47LKG5B.js → chunk-QOY6SPOS.js} +53 -9
- package/dist/chunks/{chunk-KYTV5EAZ.js → chunk-T2LYWZ5Q.js} +1 -1
- package/dist/chunks/{chunk-WE7CLY2E.js → chunk-TEFNVUGD.js} +3 -3
- package/dist/chunks/{chunk-N4QOWBRR.js → chunk-TOGXPJK7.js} +1 -1
- package/dist/chunks/{chunk-I5HVXRAO.js → chunk-UFF34SGO.js} +1 -1
- package/dist/chunks/{chunk-RFG42VIO.js → chunk-V6WSDZPL.js} +1 -1
- package/dist/chunks/{chunk-3GLG3ZLE.js → chunk-VYFNEF53.js} +1 -1
- package/dist/cli/figure.js +20 -20
- package/dist/cli/fold.js +3 -3
- package/dist/figure.js +13 -13
- package/dist/figureData.js +17 -17
- package/dist/figureScene.js +8 -8
- package/dist/figureSettings.js +4 -4
- package/dist/index.js +25 -25
- package/dist/layout/anchoredLayout.js +4 -4
- package/dist/layout/forceCache.js +4 -4
- package/dist/layout/orderedLayout.js +2 -2
- package/dist/layout/placeOffReference.js +3 -3
- package/dist/layout/referenceSeeds.js +2 -2
- package/dist/layout/sampleRowLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +3 -3
- package/dist/layout/walkStrip.js +4 -4
- package/dist/layoutModes.js +7 -7
- package/dist/pipeline.js +3 -3
- package/dist/referenceSpan.js +5 -3
- package/dist/referenceStrip.js +3 -3
- package/dist/renderer/GeometryBuilder.js +2 -2
- package/dist/tubeMap/nodeColors.js +3 -3
- package/dist/types/figureData.d.ts +2 -0
- package/dist/types/referenceSpan.d.ts +1 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +4 -4
- package/dist/walkEncoding.js +3 -3
- package/dist/walkHighlight.js +4 -4
- package/package.json +1 -1
package/dist/figure.js
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package/dist/figureData.js
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|
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|
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|
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import {
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2
|
referenceSeeds,
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|
seededNodes
|
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|
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} from "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-
|
|
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|
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|
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|
import "../chunks/chunk-RJWPJCIB.js";
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|
@@ -1,9 +1,9 @@
|
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|
1
1
|
import {
|
|
2
2
|
sampleRowLayout
|
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3
|
-
} from "../chunks/chunk-
|
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|
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|
|
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|
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|
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|
import "../chunks/chunk-BSOZW3FC.js";
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9
|
import "../chunks/chunk-RJWPJCIB.js";
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|
@@ -30,15 +30,15 @@ import {
|
|
|
30
30
|
walkRowsKey,
|
|
31
31
|
walkRowsKeyTree,
|
|
32
32
|
walkRowsTree
|
|
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|
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} from "../chunks/chunk-
|
|
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import "../chunks/chunk-
|
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|
+
} from "../chunks/chunk-A6ABMJR5.js";
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|
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|
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|
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import "../chunks/chunk-
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|
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import "../chunks/chunk-L4DBSRA2.js";
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package/dist/layout/walkStrip.js
CHANGED
|
@@ -9,11 +9,11 @@ import {
|
|
|
9
9
|
walkStripApplies,
|
|
10
10
|
walkStripFrame,
|
|
11
11
|
walkStripLabelsTree
|
|
12
|
-
} from "../chunks/chunk-
|
|
12
|
+
} from "../chunks/chunk-T2LYWZ5Q.js";
|
|
13
13
|
import {
|
|
14
14
|
LABELLED_ROW_PX
|
|
15
|
-
} from "../chunks/chunk-
|
|
16
|
-
import "../chunks/chunk-
|
|
15
|
+
} from "../chunks/chunk-A6ABMJR5.js";
|
|
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|
+
import "../chunks/chunk-EH5OIV2E.js";
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|
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|
import "../chunks/chunk-G2FD7S3C.js";
|
|
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19
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
@@ -24,7 +24,7 @@ import "../chunks/chunk-LODKC7PJ.js";
|
|
|
24
24
|
import "../chunks/chunk-VQ353UDK.js";
|
|
25
25
|
import "../chunks/chunk-ZANALBSX.js";
|
|
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26
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
27
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-L4DBSRA2.js";
|
|
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28
|
import "../chunks/chunk-LG2UK4MB.js";
|
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|
import "../chunks/chunk-AURNOR27.js";
|
|
30
30
|
import "../chunks/chunk-HMXCN6PG.js";
|
package/dist/layoutModes.js
CHANGED
|
@@ -4,21 +4,21 @@ import {
|
|
|
4
4
|
LAYOUT_MODE_VALUES,
|
|
5
5
|
layoutModeByValue,
|
|
6
6
|
modeUsesLayoutEngine
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-TEFNVUGD.js";
|
|
8
|
+
import "./chunks/chunk-3JDGPLCL.js";
|
|
9
9
|
import "./chunks/chunk-BDS5VZYZ.js";
|
|
10
10
|
import "./chunks/chunk-KKHXMJEE.js";
|
|
11
|
-
import "./chunks/chunk-
|
|
12
|
-
import "./chunks/chunk-
|
|
11
|
+
import "./chunks/chunk-CNWAVRLF.js";
|
|
12
|
+
import "./chunks/chunk-LLTISBAA.js";
|
|
13
13
|
import "./chunks/chunk-5OJZV6YT.js";
|
|
14
|
-
import "./chunks/chunk-
|
|
15
|
-
import "./chunks/chunk-
|
|
14
|
+
import "./chunks/chunk-VYFNEF53.js";
|
|
15
|
+
import "./chunks/chunk-Q7OFBTBW.js";
|
|
16
16
|
import "./chunks/chunk-VCUOYVLC.js";
|
|
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17
|
import "./chunks/chunk-C3KAPREU.js";
|
|
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18
|
import "./chunks/chunk-LODKC7PJ.js";
|
|
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19
|
import "./chunks/chunk-VQ353UDK.js";
|
|
20
20
|
import "./chunks/chunk-7L7MN2OM.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-L4DBSRA2.js";
|
|
22
22
|
import "./chunks/chunk-LG2UK4MB.js";
|
|
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|
import "./chunks/chunk-AURNOR27.js";
|
|
24
24
|
import "./chunks/chunk-HMXCN6PG.js";
|
package/dist/pipeline.js
CHANGED
|
@@ -11,16 +11,16 @@ import {
|
|
|
11
11
|
forceLayout,
|
|
12
12
|
layoutExtent,
|
|
13
13
|
loadGraph
|
|
14
|
-
} from "./chunks/chunk-
|
|
14
|
+
} from "./chunks/chunk-2AVTTUP2.js";
|
|
15
15
|
import "./chunks/chunk-OPPVSPEF.js";
|
|
16
16
|
import "./chunks/chunk-NAYS472K.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-4FRX2SPT.js";
|
|
18
18
|
import "./chunks/chunk-VPE4AYP7.js";
|
|
19
19
|
import "./chunks/chunk-TUMJNAOL.js";
|
|
20
20
|
import "./chunks/chunk-QYBZZI5H.js";
|
|
21
21
|
import "./chunks/chunk-CFXXFHRK.js";
|
|
22
22
|
import "./chunks/chunk-7L7MN2OM.js";
|
|
23
|
-
import "./chunks/chunk-
|
|
23
|
+
import "./chunks/chunk-L4DBSRA2.js";
|
|
24
24
|
import "./chunks/chunk-VSSIYQYF.js";
|
|
25
25
|
import "./chunks/chunk-LG2UK4MB.js";
|
|
26
26
|
import "./chunks/chunk-HNNP5QUN.js";
|
package/dist/referenceSpan.js
CHANGED
|
@@ -1,13 +1,15 @@
|
|
|
1
1
|
import {
|
|
2
2
|
buildNeighbors,
|
|
3
3
|
nodeReferenceSpan,
|
|
4
|
-
referenceMidpoints
|
|
5
|
-
|
|
4
|
+
referenceMidpoints,
|
|
5
|
+
referencePositions
|
|
6
|
+
} from "./chunks/chunk-L4DBSRA2.js";
|
|
6
7
|
import "./chunks/chunk-BSOZW3FC.js";
|
|
7
8
|
import "./chunks/chunk-RJWPJCIB.js";
|
|
8
9
|
import "./chunks/chunk-HOAIOEI7.js";
|
|
9
10
|
export {
|
|
10
11
|
buildNeighbors,
|
|
11
12
|
nodeReferenceSpan,
|
|
12
|
-
referenceMidpoints
|
|
13
|
+
referenceMidpoints,
|
|
14
|
+
referencePositions
|
|
13
15
|
};
|
package/dist/referenceStrip.js
CHANGED
|
@@ -7,15 +7,15 @@ import {
|
|
|
7
7
|
stripBlockAt,
|
|
8
8
|
stripOverhang,
|
|
9
9
|
stripPixels
|
|
10
|
-
} from "./chunks/chunk-
|
|
11
|
-
import "./chunks/chunk-
|
|
10
|
+
} from "./chunks/chunk-GGFR4SYO.js";
|
|
11
|
+
import "./chunks/chunk-EH5OIV2E.js";
|
|
12
12
|
import "./chunks/chunk-4KBZ7WPP.js";
|
|
13
13
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
14
14
|
import "./chunks/chunk-GQZVR5DW.js";
|
|
15
15
|
import "./chunks/chunk-P2GJBFNA.js";
|
|
16
16
|
import "./chunks/chunk-VQ353UDK.js";
|
|
17
17
|
import "./chunks/chunk-ZANALBSX.js";
|
|
18
|
-
import "./chunks/chunk-
|
|
18
|
+
import "./chunks/chunk-L4DBSRA2.js";
|
|
19
19
|
import "./chunks/chunk-AURNOR27.js";
|
|
20
20
|
import "./chunks/chunk-HMXCN6PG.js";
|
|
21
21
|
import "./chunks/chunk-AB35TJST.js";
|
|
@@ -11,7 +11,7 @@ import {
|
|
|
11
11
|
getNodeColor,
|
|
12
12
|
hslToRgb,
|
|
13
13
|
rampFraction
|
|
14
|
-
} from "../chunks/chunk-
|
|
14
|
+
} from "../chunks/chunk-EH5OIV2E.js";
|
|
15
15
|
import "../chunks/chunk-4KBZ7WPP.js";
|
|
16
16
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
17
17
|
import {
|
|
@@ -20,7 +20,7 @@ import {
|
|
|
20
20
|
import "../chunks/chunk-P2GJBFNA.js";
|
|
21
21
|
import "../chunks/chunk-VQ353UDK.js";
|
|
22
22
|
import "../chunks/chunk-ZANALBSX.js";
|
|
23
|
-
import "../chunks/chunk-
|
|
23
|
+
import "../chunks/chunk-L4DBSRA2.js";
|
|
24
24
|
import "../chunks/chunk-AURNOR27.js";
|
|
25
25
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
26
26
|
import "../chunks/chunk-AB35TJST.js";
|
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
import {
|
|
2
2
|
tubeMapNodeColors
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-UFF34SGO.js";
|
|
4
|
+
import "../chunks/chunk-EH5OIV2E.js";
|
|
5
5
|
import "../chunks/chunk-4KBZ7WPP.js";
|
|
6
6
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
7
7
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
8
8
|
import "../chunks/chunk-P2GJBFNA.js";
|
|
9
9
|
import "../chunks/chunk-VQ353UDK.js";
|
|
10
10
|
import "../chunks/chunk-ZANALBSX.js";
|
|
11
|
-
import "../chunks/chunk-
|
|
11
|
+
import "../chunks/chunk-L4DBSRA2.js";
|
|
12
12
|
import "../chunks/chunk-AURNOR27.js";
|
|
13
13
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
14
14
|
import "../chunks/chunk-AB35TJST.js";
|
|
@@ -123,6 +123,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
|
|
|
123
123
|
depth: number[];
|
|
124
124
|
backbone: boolean[];
|
|
125
125
|
referenceVisits: number[];
|
|
126
|
+
position: (number | null)[];
|
|
126
127
|
};
|
|
127
128
|
rowLabels: {
|
|
128
129
|
label: string[];
|
|
@@ -181,6 +182,7 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
|
|
|
181
182
|
depth: number[];
|
|
182
183
|
backbone: boolean[];
|
|
183
184
|
referenceVisits: number[];
|
|
185
|
+
position: (number | null)[];
|
|
184
186
|
};
|
|
185
187
|
rowLabels: {
|
|
186
188
|
label: string[];
|
|
@@ -10,3 +10,4 @@ export declare function nodeReferenceSpan({ nodeId, nodeById, neighbors, }: {
|
|
|
10
10
|
neighbors: Map<string, string[]>;
|
|
11
11
|
}): ReferenceSpan | undefined;
|
|
12
12
|
export declare function referenceMidpoints(graph: Graph): Map<string, number>;
|
|
13
|
+
export declare function referencePositions(graph: Graph): Map<string, number>;
|
package/dist/types/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "11.
|
|
1
|
+
export declare const version = "11.12.0";
|