@jbrowse/bandage-core 11.11.0 → 11.12.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (57) hide show
  1. package/dist/alleleProjection/projectAlleles.js +2 -2
  2. package/dist/bubbles/bubblesFromGraph.js +3 -3
  3. package/dist/bubbles/superbubbles.js +4 -4
  4. package/dist/chunks/{chunk-JVT3XTKN.js → chunk-2AVTTUP2.js} +1 -1
  5. package/dist/chunks/{chunk-XR2HMGAS.js → chunk-3JDGPLCL.js} +1 -1
  6. package/dist/chunks/{chunk-CKUVEHSS.js → chunk-4FRX2SPT.js} +1 -1
  7. package/dist/chunks/{chunk-PYK4JKYW.js → chunk-5SW3PTHO.js} +1 -1
  8. package/dist/chunks/{chunk-7553WCL3.js → chunk-5UIYXKTA.js} +13 -8
  9. package/dist/chunks/{chunk-R36RBFNH.js → chunk-6ROK45LO.js} +4 -4
  10. package/dist/chunks/{chunk-SVP2CQTA.js → chunk-A6ABMJR5.js} +1 -1
  11. package/dist/chunks/{chunk-GJLZ2MKE.js → chunk-CNWAVRLF.js} +1 -1
  12. package/dist/chunks/{chunk-J7RNXBXA.js → chunk-DOCI5O5R.js} +1 -1
  13. package/dist/chunks/{chunk-GXCMBPC6.js → chunk-EH5OIV2E.js} +1 -1
  14. package/dist/chunks/{chunk-2A6Z2DHF.js → chunk-EIMRD6L7.js} +1 -1
  15. package/dist/chunks/{chunk-LNLYK3Y5.js → chunk-GGFR4SYO.js} +1 -1
  16. package/dist/chunks/{chunk-EB4Q35QD.js → chunk-JQYK6GVJ.js} +1 -1
  17. package/dist/chunks/{chunk-VX656OAZ.js → chunk-L4DBSRA2.js} +20 -1
  18. package/dist/chunks/{chunk-MYLAJDKB.js → chunk-LLTISBAA.js} +2 -2
  19. package/dist/chunks/{chunk-3DHGSHC3.js → chunk-OKPSS5PG.js} +1 -1
  20. package/dist/chunks/{chunk-JPT44REW.js → chunk-Q2AMKXAX.js} +8 -8
  21. package/dist/chunks/{chunk-UAFATXYA.js → chunk-Q7OFBTBW.js} +1 -1
  22. package/dist/chunks/{chunk-F47LKG5B.js → chunk-QOY6SPOS.js} +53 -9
  23. package/dist/chunks/{chunk-KYTV5EAZ.js → chunk-T2LYWZ5Q.js} +1 -1
  24. package/dist/chunks/{chunk-WE7CLY2E.js → chunk-TEFNVUGD.js} +3 -3
  25. package/dist/chunks/{chunk-N4QOWBRR.js → chunk-TOGXPJK7.js} +1 -1
  26. package/dist/chunks/{chunk-I5HVXRAO.js → chunk-UFF34SGO.js} +1 -1
  27. package/dist/chunks/{chunk-RFG42VIO.js → chunk-V6WSDZPL.js} +1 -1
  28. package/dist/chunks/{chunk-3GLG3ZLE.js → chunk-VYFNEF53.js} +1 -1
  29. package/dist/cli/figure.js +20 -20
  30. package/dist/cli/fold.js +3 -3
  31. package/dist/figure.js +13 -13
  32. package/dist/figureData.js +17 -17
  33. package/dist/figureScene.js +8 -8
  34. package/dist/figureSettings.js +4 -4
  35. package/dist/index.js +25 -25
  36. package/dist/layout/anchoredLayout.js +4 -4
  37. package/dist/layout/forceCache.js +4 -4
  38. package/dist/layout/orderedLayout.js +2 -2
  39. package/dist/layout/placeOffReference.js +3 -3
  40. package/dist/layout/referenceSeeds.js +2 -2
  41. package/dist/layout/sampleRowLayout.js +4 -4
  42. package/dist/layout/walkRowDraw.js +3 -3
  43. package/dist/layout/walkStrip.js +4 -4
  44. package/dist/layoutModes.js +7 -7
  45. package/dist/pipeline.js +3 -3
  46. package/dist/referenceSpan.js +5 -3
  47. package/dist/referenceStrip.js +3 -3
  48. package/dist/renderer/GeometryBuilder.js +2 -2
  49. package/dist/tubeMap/nodeColors.js +3 -3
  50. package/dist/types/figureData.d.ts +2 -0
  51. package/dist/types/referenceSpan.d.ts +1 -0
  52. package/dist/types/version.d.ts +1 -1
  53. package/dist/version.js +1 -1
  54. package/dist/viewport.js +4 -4
  55. package/dist/walkEncoding.js +3 -3
  56. package/dist/walkHighlight.js +4 -4
  57. package/package.json +1 -1
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  projectAlleles
3
- } from "../chunks/chunk-3GLG3ZLE.js";
4
- import "../chunks/chunk-VX656OAZ.js";
3
+ } from "../chunks/chunk-VYFNEF53.js";
4
+ import "../chunks/chunk-L4DBSRA2.js";
5
5
  import "../chunks/chunk-BSOZW3FC.js";
6
6
  import "../chunks/chunk-RJWPJCIB.js";
7
7
  import "../chunks/chunk-HOAIOEI7.js";
@@ -4,10 +4,10 @@ import {
4
4
  relax,
5
5
  walkIndexOf,
6
6
  walkRoutes
7
- } from "../chunks/chunk-RFG42VIO.js";
7
+ } from "../chunks/chunk-V6WSDZPL.js";
8
8
  import "../chunks/chunk-FX4RDMDN.js";
9
- import "../chunks/chunk-UAFATXYA.js";
10
- import "../chunks/chunk-VX656OAZ.js";
9
+ import "../chunks/chunk-Q7OFBTBW.js";
10
+ import "../chunks/chunk-L4DBSRA2.js";
11
11
  import "../chunks/chunk-CPMHA4W5.js";
12
12
  import "../chunks/chunk-BSOZW3FC.js";
13
13
  import "../chunks/chunk-RJWPJCIB.js";
@@ -1,14 +1,14 @@
1
1
  import {
2
2
  graphBubbles,
3
3
  superbubblesFromGraph
4
- } from "../chunks/chunk-J7RNXBXA.js";
4
+ } from "../chunks/chunk-DOCI5O5R.js";
5
5
  import "../chunks/chunk-SZYFZNCO.js";
6
- import "../chunks/chunk-RFG42VIO.js";
6
+ import "../chunks/chunk-V6WSDZPL.js";
7
7
  import "../chunks/chunk-NWEVR2OQ.js";
8
8
  import "../chunks/chunk-FX4RDMDN.js";
9
9
  import "../chunks/chunk-MHZTTLBU.js";
10
- import "../chunks/chunk-UAFATXYA.js";
11
- import "../chunks/chunk-VX656OAZ.js";
10
+ import "../chunks/chunk-Q7OFBTBW.js";
11
+ import "../chunks/chunk-L4DBSRA2.js";
12
12
  import "../chunks/chunk-AURNOR27.js";
13
13
  import "../chunks/chunk-HMXCN6PG.js";
14
14
  import "../chunks/chunk-AB35TJST.js";
@@ -6,7 +6,7 @@ import {
6
6
  } from "./chunk-NAYS472K.js";
7
7
  import {
8
8
  seededNodes
9
- } from "./chunk-CKUVEHSS.js";
9
+ } from "./chunk-4FRX2SPT.js";
10
10
  import {
11
11
  routeNodes,
12
12
  takeRoutes,
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  placeOffReference
3
- } from "./chunk-MYLAJDKB.js";
3
+ } from "./chunk-LLTISBAA.js";
4
4
  import {
5
5
  ROW_HEIGHT_PX
6
6
  } from "./chunk-CPMHA4W5.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  buildNeighbors
3
- } from "./chunk-VX656OAZ.js";
3
+ } from "./chunk-L4DBSRA2.js";
4
4
  import {
5
5
  drawnNodeLength
6
6
  } from "./chunk-34BOZKIE.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  ENGINE_DEFAULTS
3
- } from "./chunk-JVT3XTKN.js";
3
+ } from "./chunk-2AVTTUP2.js";
4
4
 
5
5
  // src/figureSettings.ts
6
6
  var FIGURE_DEFAULTS = {
@@ -3,7 +3,7 @@ import {
3
3
  } from "./chunk-CO6RGQAD.js";
4
4
  import {
5
5
  layoutModeByValue
6
- } from "./chunk-WE7CLY2E.js";
6
+ } from "./chunk-TEFNVUGD.js";
7
7
  import {
8
8
  parseRegion
9
9
  } from "./chunk-FNDNSDKW.js";
@@ -12,16 +12,16 @@ import {
12
12
  } from "./chunk-HEYIAMTC.js";
13
13
  import {
14
14
  version
15
- } from "./chunk-N4QOWBRR.js";
15
+ } from "./chunk-TOGXPJK7.js";
16
16
  import {
17
17
  axisScaleOf
18
- } from "./chunk-3DHGSHC3.js";
18
+ } from "./chunk-OKPSS5PG.js";
19
19
  import {
20
20
  figureScene
21
- } from "./chunk-R36RBFNH.js";
21
+ } from "./chunk-6ROK45LO.js";
22
22
  import {
23
23
  encodingStops
24
- } from "./chunk-EB4Q35QD.js";
24
+ } from "./chunk-JQYK6GVJ.js";
25
25
  import {
26
26
  laneSlideAt,
27
27
  passesKey,
@@ -35,13 +35,16 @@ import {
35
35
  } from "./chunk-G2FD7S3C.js";
36
36
  import {
37
37
  FIGURE_DEFAULTS
38
- } from "./chunk-PYK4JKYW.js";
38
+ } from "./chunk-5SW3PTHO.js";
39
39
  import {
40
40
  engineSettingsOf,
41
41
  fitTransform,
42
42
  forceLayout,
43
43
  loadGraph
44
- } from "./chunk-JVT3XTKN.js";
44
+ } from "./chunk-2AVTTUP2.js";
45
+ import {
46
+ referencePositions
47
+ } from "./chunk-L4DBSRA2.js";
45
48
  import {
46
49
  referenceVisitStarts
47
50
  } from "./chunk-3YBP46PB.js";
@@ -298,6 +301,7 @@ function figureData(graph, layout, o = {}) {
298
301
  }
299
302
  }
300
303
  const startsOf = referenceVisitStarts(graph);
304
+ const positions = referencePositions(graph);
301
305
  return {
302
306
  meta: {
303
307
  generator: `@jbrowse/bandage-core@${version}`,
@@ -336,7 +340,8 @@ function figureData(graph, layout, o = {}) {
336
340
  backbone: graph.nodes.map((n) => isBackbone(n)),
337
341
  referenceVisits: graph.nodes.map(
338
342
  (n) => isBackbone(n) ? startsOf(n).length : 0
339
- )
343
+ ),
344
+ position: graph.nodes.map((n) => positions.get(n.id) ?? null)
340
345
  },
341
346
  rowLabels: {
342
347
  label: (layout.rowLabels ?? []).map((r) => r.label),
@@ -4,11 +4,11 @@ import {
4
4
  import {
5
5
  facetLifts,
6
6
  walkLift
7
- } from "./chunk-F47LKG5B.js";
7
+ } from "./chunk-QOY6SPOS.js";
8
8
  import {
9
9
  buildGeometry,
10
10
  computeReferenceRamp
11
- } from "./chunk-GXCMBPC6.js";
11
+ } from "./chunk-EH5OIV2E.js";
12
12
  import {
13
13
  walkKey
14
14
  } from "./chunk-IZKM4NY7.js";
@@ -21,10 +21,10 @@ import {
21
21
  } from "./chunk-VQ353UDK.js";
22
22
  import {
23
23
  FIGURE_DEFAULTS
24
- } from "./chunk-PYK4JKYW.js";
24
+ } from "./chunk-5SW3PTHO.js";
25
25
  import {
26
26
  drawingBounds
27
- } from "./chunk-JVT3XTKN.js";
27
+ } from "./chunk-2AVTTUP2.js";
28
28
  import {
29
29
  referenceLabel
30
30
  } from "./chunk-5ORP7EFJ.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  REFERENCE_RAMP_ALT_CSS
3
- } from "./chunk-GXCMBPC6.js";
3
+ } from "./chunk-EH5OIV2E.js";
4
4
  import {
5
5
  RAMP_GRADIENT_CSS,
6
6
  RAMP_GRADIENT_STOPS,
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  placeOffReference
3
- } from "./chunk-MYLAJDKB.js";
3
+ } from "./chunk-LLTISBAA.js";
4
4
  import {
5
5
  ROW_HEIGHT_PX
6
6
  } from "./chunk-CPMHA4W5.js";
@@ -7,7 +7,7 @@ import {
7
7
  relax,
8
8
  walkIndexOf,
9
9
  walkRoutes
10
- } from "./chunk-RFG42VIO.js";
10
+ } from "./chunk-V6WSDZPL.js";
11
11
  import {
12
12
  bubbleSegmentIds
13
13
  } from "./chunk-NWEVR2OQ.js";
@@ -34,7 +34,7 @@ import {
34
34
  } from "./chunk-ZANALBSX.js";
35
35
  import {
36
36
  referenceMidpoints
37
- } from "./chunk-VX656OAZ.js";
37
+ } from "./chunk-L4DBSRA2.js";
38
38
  import {
39
39
  weakMemo
40
40
  } from "./chunk-HMXCN6PG.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  engineKey,
3
3
  forceLayout
4
- } from "./chunk-JVT3XTKN.js";
4
+ } from "./chunk-2AVTTUP2.js";
5
5
 
6
6
  // src/layout/forceCache.ts
7
7
  var DEFAULT_SIZE = 4;
@@ -2,7 +2,7 @@ import {
2
2
  LIFT_BACKDROP_CSS,
3
3
  computeColorSchemeRange,
4
4
  getNodeColor
5
- } from "./chunk-GXCMBPC6.js";
5
+ } from "./chunk-EH5OIV2E.js";
6
6
  import {
7
7
  abgrToCssRgba
8
8
  } from "./chunk-G2FD7S3C.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  REFERENCE_RAMP_ALT_COLOR,
3
3
  hslToRgb
4
- } from "./chunk-GXCMBPC6.js";
4
+ } from "./chunk-EH5OIV2E.js";
5
5
  import {
6
6
  packAbgr
7
7
  } from "./chunk-G2FD7S3C.js";
@@ -70,9 +70,28 @@ function referenceMidpoints(graph) {
70
70
  }
71
71
  return midpoints;
72
72
  }
73
+ function referencePositions(graph) {
74
+ const positions = referenceMidpoints(graph);
75
+ const neighbors = buildNeighbors(graph);
76
+ let frontier = [...positions.keys()];
77
+ while (frontier.length > 0) {
78
+ const next = [];
79
+ for (const id of frontier) {
80
+ for (const neighborId of neighbors.get(id) ?? []) {
81
+ if (!positions.has(neighborId)) {
82
+ positions.set(neighborId, positions.get(id));
83
+ next.push(neighborId);
84
+ }
85
+ }
86
+ }
87
+ frontier = next;
88
+ }
89
+ return positions;
90
+ }
73
91
 
74
92
  export {
75
93
  buildNeighbors,
76
94
  nodeReferenceSpan,
77
- referenceMidpoints
95
+ referenceMidpoints,
96
+ referencePositions
78
97
  };
@@ -1,9 +1,9 @@
1
1
  import {
2
2
  projectAlleles
3
- } from "./chunk-3GLG3ZLE.js";
3
+ } from "./chunk-VYFNEF53.js";
4
4
  import {
5
5
  buildNeighbors
6
- } from "./chunk-VX656OAZ.js";
6
+ } from "./chunk-L4DBSRA2.js";
7
7
 
8
8
  // src/layout/placeOffReference.ts
9
9
  var MIN_DELETION_BP = 1;
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  clampZoom
3
- } from "./chunk-JVT3XTKN.js";
3
+ } from "./chunk-2AVTTUP2.js";
4
4
 
5
5
  // src/viewport.ts
6
6
  function axisScaleOf(scale, pixelRows) {
@@ -5,7 +5,7 @@ import {
5
5
  stripGeneGaps,
6
6
  walkStripFrame,
7
7
  walkStripLabelsTree
8
- } from "./chunk-KYTV5EAZ.js";
8
+ } from "./chunk-T2LYWZ5Q.js";
9
9
  import {
10
10
  Canvas2DRenderer
11
11
  } from "./chunk-4DMSPNYV.js";
@@ -13,7 +13,7 @@ import {
13
13
  walkRowsKey,
14
14
  walkRowsKeyTree,
15
15
  walkRowsTree
16
- } from "./chunk-SVP2CQTA.js";
16
+ } from "./chunk-A6ABMJR5.js";
17
17
  import {
18
18
  EXON_COLOR,
19
19
  exonOutlineTree,
@@ -30,16 +30,16 @@ import {
30
30
  } from "./chunk-HEYIAMTC.js";
31
31
  import {
32
32
  version
33
- } from "./chunk-N4QOWBRR.js";
33
+ } from "./chunk-TOGXPJK7.js";
34
34
  import {
35
35
  axisScaleOf
36
- } from "./chunk-3DHGSHC3.js";
36
+ } from "./chunk-OKPSS5PG.js";
37
37
  import {
38
38
  figureScene
39
- } from "./chunk-R36RBFNH.js";
39
+ } from "./chunk-6ROK45LO.js";
40
40
  import {
41
41
  encodingStops
42
- } from "./chunk-EB4Q35QD.js";
42
+ } from "./chunk-JQYK6GVJ.js";
43
43
  import {
44
44
  THREAD_PX,
45
45
  passesKey,
@@ -56,11 +56,11 @@ import {
56
56
  } from "./chunk-ZANALBSX.js";
57
57
  import {
58
58
  FIGURE_DEFAULTS
59
- } from "./chunk-PYK4JKYW.js";
59
+ } from "./chunk-5SW3PTHO.js";
60
60
  import {
61
61
  FIT_PADDING,
62
62
  fitTransform
63
- } from "./chunk-JVT3XTKN.js";
63
+ } from "./chunk-2AVTTUP2.js";
64
64
  import {
65
65
  LABEL_CHAR_PX,
66
66
  LABEL_PAD,
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  buildNeighbors
3
- } from "./chunk-VX656OAZ.js";
3
+ } from "./chunk-L4DBSRA2.js";
4
4
  import {
5
5
  ROW_HEIGHT_PX
6
6
  } from "./chunk-CPMHA4W5.js";
@@ -2,16 +2,20 @@ import {
2
2
  encodedColor,
3
3
  resolveEncoding,
4
4
  splitFamilies
5
- } from "./chunk-EB4Q35QD.js";
5
+ } from "./chunk-JQYK6GVJ.js";
6
6
  import {
7
7
  rampFraction
8
- } from "./chunk-GXCMBPC6.js";
8
+ } from "./chunk-EH5OIV2E.js";
9
9
  import {
10
10
  gapParts
11
11
  } from "./chunk-LG2UK4MB.js";
12
12
  import {
13
- pathOrigin
13
+ pathOrigin,
14
+ referenceVisitStarts
14
15
  } from "./chunk-3YBP46PB.js";
16
+ import {
17
+ isBackbone
18
+ } from "./chunk-RJWPJCIB.js";
15
19
  import {
16
20
  panSNContig
17
21
  } from "./chunk-2JL2JVZ2.js";
@@ -132,20 +136,60 @@ function highlightOf(graph, name, { byId, edgeAt }) {
132
136
  unknownBp
133
137
  };
134
138
  }
135
- function laneColors(byId, walk, encoding, ramp) {
139
+ function laneColors(graph, byId, walk, encoding, ramp) {
140
+ const places = encoding.field === "progress" || !ramp ? void 0 : referencePlaces(graph, byId, walk, ramp);
136
141
  const colors = /* @__PURE__ */ new Map();
137
142
  const passColors = /* @__PURE__ */ new Map();
138
143
  for (const [id, progress] of walk.passProgress) {
139
- const node = byId.get(id);
140
- const atNode = ramp && node ? rampFraction(node, ramp) : void 0;
144
+ const at = places?.get(id);
141
145
  const each = progress.map(
142
- (t) => encodedColor(encoding, encoding.field === "progress" ? t : atNode)
146
+ (t, pass) => encodedColor(encoding, places ? at?.[pass] : t)
143
147
  );
144
148
  colors.set(id, each[0]);
145
149
  passColors.set(id, each);
146
150
  }
147
151
  return { colors, passColors };
148
152
  }
153
+ function referencePlaces(graph, byId, walk, ramp) {
154
+ const startsOf = referenceVisitStarts(graph);
155
+ const places = /* @__PURE__ */ new Map();
156
+ for (const piece of walk.route) {
157
+ let cursor = Number.NaN;
158
+ let last = Number.NaN;
159
+ for (const id of piece) {
160
+ const node = byId.get(id);
161
+ let t = node && rampFraction(node, ramp);
162
+ if (node && t !== void 0 && isBackbone(node)) {
163
+ const starts = startsOf(node);
164
+ const len = node.length;
165
+ let at = starts[0];
166
+ if (starts.length > 1 && !Number.isNaN(cursor)) {
167
+ let gap = Infinity;
168
+ for (const start of starts) {
169
+ const g = Math.min(
170
+ Math.abs(start - cursor),
171
+ Math.abs(start + len - cursor)
172
+ );
173
+ if (g < gap) {
174
+ at = start;
175
+ gap = g;
176
+ }
177
+ }
178
+ t = (at + len / 2 - ramp.start) / ramp.span;
179
+ }
180
+ cursor = at + len === last ? at : at + len;
181
+ last = at;
182
+ }
183
+ const seen = places.get(id);
184
+ if (seen) {
185
+ seen.push(t);
186
+ } else {
187
+ places.set(id, [t]);
188
+ }
189
+ }
190
+ }
191
+ return places;
192
+ }
149
193
  function reversedNodes(graph, byId, walk) {
150
194
  const reversed = /* @__PURE__ */ new Set();
151
195
  let bp = 0;
@@ -198,7 +242,7 @@ function walkLift(graph, layers, ramp) {
198
242
  return {
199
243
  ...walk,
200
244
  encoding,
201
- ...laneColors(index.byId, walk, encoding, ramp),
245
+ ...laneColors(graph, index.byId, walk, encoding, ramp),
202
246
  reversed,
203
247
  reversedBp: bp
204
248
  };
@@ -220,7 +264,7 @@ function facetLifts(graph, lift, layers, ramp) {
220
264
  {
221
265
  ...walk,
222
266
  encoding,
223
- ...laneColors(byId, walk, encoding, ramp)
267
+ ...laneColors(graph, byId, walk, encoding, ramp)
224
268
  }
225
269
  ],
226
270
  ramp
@@ -3,7 +3,7 @@ import {
3
3
  boxesGenes,
4
4
  rowPitch,
5
5
  rowSpan
6
- } from "./chunk-SVP2CQTA.js";
6
+ } from "./chunk-A6ABMJR5.js";
7
7
  import {
8
8
  READOUT_ROOM,
9
9
  longestBar
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  sampleRowLayout
3
- } from "./chunk-XR2HMGAS.js";
3
+ } from "./chunk-3JDGPLCL.js";
4
4
  import {
5
5
  hasTubeMapBackbone,
6
6
  hasTubeMapPaths,
@@ -9,10 +9,10 @@ import {
9
9
  } from "./chunk-BDS5VZYZ.js";
10
10
  import {
11
11
  anchoredLayout
12
- } from "./chunk-GJLZ2MKE.js";
12
+ } from "./chunk-CNWAVRLF.js";
13
13
  import {
14
14
  orderedLayout
15
- } from "./chunk-UAFATXYA.js";
15
+ } from "./chunk-Q7OFBTBW.js";
16
16
  import {
17
17
  walkRowLayout
18
18
  } from "./chunk-VCUOYVLC.js";
@@ -1,5 +1,5 @@
1
1
  // src/version.ts
2
- var version = "11.11.0";
2
+ var version = "11.12.0";
3
3
 
4
4
  export {
5
5
  version
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  computeColorSchemeRange,
3
3
  getNodeColor
4
- } from "./chunk-GXCMBPC6.js";
4
+ } from "./chunk-EH5OIV2E.js";
5
5
  import {
6
6
  abgrToCssRgba
7
7
  } from "./chunk-G2FD7S3C.js";
@@ -3,7 +3,7 @@ import {
3
3
  } from "./chunk-FX4RDMDN.js";
4
4
  import {
5
5
  referenceOrder
6
- } from "./chunk-UAFATXYA.js";
6
+ } from "./chunk-Q7OFBTBW.js";
7
7
  import {
8
8
  addTo
9
9
  } from "./chunk-BSOZW3FC.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  buildNeighbors
3
- } from "./chunk-VX656OAZ.js";
3
+ } from "./chunk-L4DBSRA2.js";
4
4
  import {
5
5
  REFERENCE_RANK,
6
6
  isAnchored
@@ -9,22 +9,22 @@ import "../chunks/chunk-EQDQ7P4Y.js";
9
9
  import {
10
10
  laidOutGraph,
11
11
  walkLayers
12
- } from "../chunks/chunk-7553WCL3.js";
12
+ } from "../chunks/chunk-5UIYXKTA.js";
13
13
  import {
14
14
  LAYOUT_ENGINE_VALUES,
15
15
  isLayoutEngineKind
16
16
  } from "../chunks/chunk-CO6RGQAD.js";
17
17
  import {
18
18
  LAYOUT_MODES
19
- } from "../chunks/chunk-WE7CLY2E.js";
20
- import "../chunks/chunk-XR2HMGAS.js";
19
+ } from "../chunks/chunk-TEFNVUGD.js";
20
+ import "../chunks/chunk-3JDGPLCL.js";
21
21
  import "../chunks/chunk-BDS5VZYZ.js";
22
22
  import "../chunks/chunk-KKHXMJEE.js";
23
- import "../chunks/chunk-GJLZ2MKE.js";
24
- import "../chunks/chunk-MYLAJDKB.js";
23
+ import "../chunks/chunk-CNWAVRLF.js";
24
+ import "../chunks/chunk-LLTISBAA.js";
25
25
  import "../chunks/chunk-5OJZV6YT.js";
26
- import "../chunks/chunk-3GLG3ZLE.js";
27
- import "../chunks/chunk-UAFATXYA.js";
26
+ import "../chunks/chunk-VYFNEF53.js";
27
+ import "../chunks/chunk-Q7OFBTBW.js";
28
28
  import {
29
29
  cutGbzRegion,
30
30
  gbzLocations,
@@ -36,27 +36,27 @@ import "../chunks/chunk-ZKSC7QVE.js";
36
36
  import "../chunks/chunk-HNWJ4B7S.js";
37
37
  import {
38
38
  figureSvg
39
- } from "../chunks/chunk-JPT44REW.js";
39
+ } from "../chunks/chunk-Q2AMKXAX.js";
40
40
  import "../chunks/chunk-V4YML3GR.js";
41
- import "../chunks/chunk-KYTV5EAZ.js";
41
+ import "../chunks/chunk-T2LYWZ5Q.js";
42
42
  import "../chunks/chunk-4DMSPNYV.js";
43
43
  import "../chunks/chunk-RBCE2OQH.js";
44
44
  import {
45
45
  genesOnRow,
46
46
  placeRowGenes
47
- } from "../chunks/chunk-SVP2CQTA.js";
47
+ } from "../chunks/chunk-A6ABMJR5.js";
48
48
  import "../chunks/chunk-JSUCGZ6K.js";
49
49
  import "../chunks/chunk-TQ26XEFL.js";
50
50
  import "../chunks/chunk-4JDO7ZLN.js";
51
51
  import "../chunks/chunk-7YSIP3O2.js";
52
52
  import "../chunks/chunk-HEYIAMTC.js";
53
- import "../chunks/chunk-N4QOWBRR.js";
54
- import "../chunks/chunk-3DHGSHC3.js";
55
- import "../chunks/chunk-R36RBFNH.js";
53
+ import "../chunks/chunk-TOGXPJK7.js";
54
+ import "../chunks/chunk-OKPSS5PG.js";
55
+ import "../chunks/chunk-6ROK45LO.js";
56
56
  import "../chunks/chunk-LOCJN3BZ.js";
57
- import "../chunks/chunk-F47LKG5B.js";
58
- import "../chunks/chunk-EB4Q35QD.js";
59
- import "../chunks/chunk-GXCMBPC6.js";
57
+ import "../chunks/chunk-QOY6SPOS.js";
58
+ import "../chunks/chunk-JQYK6GVJ.js";
59
+ import "../chunks/chunk-EH5OIV2E.js";
60
60
  import "../chunks/chunk-4KBZ7WPP.js";
61
61
  import "../chunks/chunk-G2FD7S3C.js";
62
62
  import "../chunks/chunk-IZKM4NY7.js";
@@ -70,17 +70,17 @@ import {
70
70
  import "../chunks/chunk-LODKC7PJ.js";
71
71
  import "../chunks/chunk-VQ353UDK.js";
72
72
  import "../chunks/chunk-ZANALBSX.js";
73
- import "../chunks/chunk-PYK4JKYW.js";
74
- import "../chunks/chunk-JVT3XTKN.js";
73
+ import "../chunks/chunk-5SW3PTHO.js";
74
+ import "../chunks/chunk-2AVTTUP2.js";
75
75
  import "../chunks/chunk-OPPVSPEF.js";
76
76
  import "../chunks/chunk-NAYS472K.js";
77
- import "../chunks/chunk-CKUVEHSS.js";
77
+ import "../chunks/chunk-4FRX2SPT.js";
78
78
  import "../chunks/chunk-VPE4AYP7.js";
79
79
  import "../chunks/chunk-TUMJNAOL.js";
80
80
  import "../chunks/chunk-QYBZZI5H.js";
81
81
  import "../chunks/chunk-CFXXFHRK.js";
82
82
  import "../chunks/chunk-7L7MN2OM.js";
83
- import "../chunks/chunk-VX656OAZ.js";
83
+ import "../chunks/chunk-L4DBSRA2.js";
84
84
  import "../chunks/chunk-5ORP7EFJ.js";
85
85
  import "../chunks/chunk-VSSIYQYF.js";
86
86
  import "../chunks/chunk-LG2UK4MB.js";
package/dist/cli/fold.js CHANGED
@@ -10,16 +10,16 @@ import {
10
10
  } from "../chunks/chunk-4BYGFDQB.js";
11
11
  import {
12
12
  loadGraph
13
- } from "../chunks/chunk-JVT3XTKN.js";
13
+ } from "../chunks/chunk-2AVTTUP2.js";
14
14
  import "../chunks/chunk-OPPVSPEF.js";
15
15
  import "../chunks/chunk-NAYS472K.js";
16
- import "../chunks/chunk-CKUVEHSS.js";
16
+ import "../chunks/chunk-4FRX2SPT.js";
17
17
  import "../chunks/chunk-VPE4AYP7.js";
18
18
  import "../chunks/chunk-TUMJNAOL.js";
19
19
  import "../chunks/chunk-QYBZZI5H.js";
20
20
  import "../chunks/chunk-CFXXFHRK.js";
21
21
  import "../chunks/chunk-7L7MN2OM.js";
22
- import "../chunks/chunk-VX656OAZ.js";
22
+ import "../chunks/chunk-L4DBSRA2.js";
23
23
  import "../chunks/chunk-VSSIYQYF.js";
24
24
  import "../chunks/chunk-LG2UK4MB.js";
25
25
  import "../chunks/chunk-HNNP5QUN.js";