@jbrowse/bandage-core 11.11.0 → 11.12.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/alleleProjection/projectAlleles.js +2 -2
- package/dist/bubbles/bubblesFromGraph.js +3 -3
- package/dist/bubbles/superbubbles.js +4 -4
- package/dist/chunks/{chunk-JVT3XTKN.js → chunk-2AVTTUP2.js} +1 -1
- package/dist/chunks/{chunk-XR2HMGAS.js → chunk-3JDGPLCL.js} +1 -1
- package/dist/chunks/{chunk-CKUVEHSS.js → chunk-4FRX2SPT.js} +1 -1
- package/dist/chunks/{chunk-PYK4JKYW.js → chunk-5SW3PTHO.js} +1 -1
- package/dist/chunks/{chunk-7553WCL3.js → chunk-5UIYXKTA.js} +13 -8
- package/dist/chunks/{chunk-R36RBFNH.js → chunk-6ROK45LO.js} +4 -4
- package/dist/chunks/{chunk-SVP2CQTA.js → chunk-A6ABMJR5.js} +1 -1
- package/dist/chunks/{chunk-GJLZ2MKE.js → chunk-CNWAVRLF.js} +1 -1
- package/dist/chunks/{chunk-J7RNXBXA.js → chunk-DOCI5O5R.js} +1 -1
- package/dist/chunks/{chunk-GXCMBPC6.js → chunk-EH5OIV2E.js} +1 -1
- package/dist/chunks/{chunk-2A6Z2DHF.js → chunk-EIMRD6L7.js} +1 -1
- package/dist/chunks/{chunk-LNLYK3Y5.js → chunk-GGFR4SYO.js} +1 -1
- package/dist/chunks/{chunk-EB4Q35QD.js → chunk-JQYK6GVJ.js} +1 -1
- package/dist/chunks/{chunk-VX656OAZ.js → chunk-L4DBSRA2.js} +20 -1
- package/dist/chunks/{chunk-MYLAJDKB.js → chunk-LLTISBAA.js} +2 -2
- package/dist/chunks/{chunk-3DHGSHC3.js → chunk-OKPSS5PG.js} +1 -1
- package/dist/chunks/{chunk-JPT44REW.js → chunk-Q2AMKXAX.js} +8 -8
- package/dist/chunks/{chunk-UAFATXYA.js → chunk-Q7OFBTBW.js} +1 -1
- package/dist/chunks/{chunk-F47LKG5B.js → chunk-QOY6SPOS.js} +53 -9
- package/dist/chunks/{chunk-KYTV5EAZ.js → chunk-T2LYWZ5Q.js} +1 -1
- package/dist/chunks/{chunk-WE7CLY2E.js → chunk-TEFNVUGD.js} +3 -3
- package/dist/chunks/{chunk-N4QOWBRR.js → chunk-TOGXPJK7.js} +1 -1
- package/dist/chunks/{chunk-I5HVXRAO.js → chunk-UFF34SGO.js} +1 -1
- package/dist/chunks/{chunk-RFG42VIO.js → chunk-V6WSDZPL.js} +1 -1
- package/dist/chunks/{chunk-3GLG3ZLE.js → chunk-VYFNEF53.js} +1 -1
- package/dist/cli/figure.js +20 -20
- package/dist/cli/fold.js +3 -3
- package/dist/figure.js +13 -13
- package/dist/figureData.js +17 -17
- package/dist/figureScene.js +8 -8
- package/dist/figureSettings.js +4 -4
- package/dist/index.js +25 -25
- package/dist/layout/anchoredLayout.js +4 -4
- package/dist/layout/forceCache.js +4 -4
- package/dist/layout/orderedLayout.js +2 -2
- package/dist/layout/placeOffReference.js +3 -3
- package/dist/layout/referenceSeeds.js +2 -2
- package/dist/layout/sampleRowLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +3 -3
- package/dist/layout/walkStrip.js +4 -4
- package/dist/layoutModes.js +7 -7
- package/dist/pipeline.js +3 -3
- package/dist/referenceSpan.js +5 -3
- package/dist/referenceStrip.js +3 -3
- package/dist/renderer/GeometryBuilder.js +2 -2
- package/dist/tubeMap/nodeColors.js +3 -3
- package/dist/types/figureData.d.ts +2 -0
- package/dist/types/referenceSpan.d.ts +1 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +4 -4
- package/dist/walkEncoding.js +3 -3
- package/dist/walkHighlight.js +4 -4
- package/package.json +1 -1
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import {
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projectAlleles
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} from "../chunks/chunk-
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} from "../chunks/chunk-VYFNEF53.js";
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import "../chunks/chunk-HOAIOEI7.js";
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relax,
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walkIndexOf,
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walkRoutes
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} from "../chunks/chunk-V6WSDZPL.js";
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import "../chunks/chunk-L4DBSRA2.js";
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import "../chunks/chunk-RJWPJCIB.js";
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import {
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graphBubbles,
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superbubblesFromGraph
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} from "../chunks/chunk-DOCI5O5R.js";
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import "../chunks/chunk-L4DBSRA2.js";
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import "../chunks/chunk-AURNOR27.js";
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import "../chunks/chunk-HMXCN6PG.js";
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import "../chunks/chunk-AB35TJST.js";
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layoutModeByValue
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parseRegion
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import {
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version
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axisScaleOf
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figureScene
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encodingStops
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import {
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laneSlideAt,
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passesKey,
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import {
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FIGURE_DEFAULTS
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} from "./chunk-5SW3PTHO.js";
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import {
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engineSettingsOf,
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fitTransform,
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forceLayout,
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loadGraph
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} from "./chunk-
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} from "./chunk-2AVTTUP2.js";
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import {
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referencePositions
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} from "./chunk-L4DBSRA2.js";
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const positions = referencePositions(graph);
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return {
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meta: {
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generator: `@jbrowse/bandage-core@${version}`,
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backbone: graph.nodes.map((n) => isBackbone(n)),
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referenceVisits: graph.nodes.map(
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(n) => isBackbone(n) ? startsOf(n).length : 0
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)
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),
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position: graph.nodes.map((n) => positions.get(n.id) ?? null)
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},
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rowLabels: {
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label: (layout.rowLabels ?? []).map((r) => r.label),
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function reversedNodes(graph, byId, walk) {
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|
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|
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|
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|
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|
],
|
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|
ramp
|
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|
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1
1
|
import {
|
|
2
2
|
sampleRowLayout
|
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-
} from "./chunk-
|
|
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|
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} from "./chunk-3JDGPLCL.js";
|
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|
import {
|
|
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5
|
hasTubeMapBackbone,
|
|
6
6
|
hasTubeMapPaths,
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|
@@ -9,10 +9,10 @@ import {
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9
|
} from "./chunk-BDS5VZYZ.js";
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|
import {
|
|
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|
anchoredLayout
|
|
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-
} from "./chunk-
|
|
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|
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} from "./chunk-CNWAVRLF.js";
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|
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|
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14
|
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|
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} from "./chunk-
|
|
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|
+
} from "./chunk-Q7OFBTBW.js";
|
|
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|
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|
|
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17
|
walkRowLayout
|
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18
|
} from "./chunk-VCUOYVLC.js";
|
package/dist/cli/figure.js
CHANGED
|
@@ -9,22 +9,22 @@ import "../chunks/chunk-EQDQ7P4Y.js";
|
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9
|
import {
|
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|
laidOutGraph,
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|
walkLayers
|
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|
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} from "../chunks/chunk-
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|
+
} from "../chunks/chunk-5UIYXKTA.js";
|
|
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13
|
import {
|
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14
|
LAYOUT_ENGINE_VALUES,
|
|
15
15
|
isLayoutEngineKind
|
|
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16
|
} from "../chunks/chunk-CO6RGQAD.js";
|
|
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17
|
import {
|
|
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18
|
LAYOUT_MODES
|
|
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|
-
} from "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
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|
+
} from "../chunks/chunk-TEFNVUGD.js";
|
|
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|
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import "../chunks/chunk-3JDGPLCL.js";
|
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21
|
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|
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22
|
import "../chunks/chunk-KKHXMJEE.js";
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|
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import "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-CNWAVRLF.js";
|
|
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|
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import "../chunks/chunk-LLTISBAA.js";
|
|
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25
|
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|
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|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-VYFNEF53.js";
|
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|
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import "../chunks/chunk-Q7OFBTBW.js";
|
|
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28
|
import {
|
|
29
29
|
cutGbzRegion,
|
|
30
30
|
gbzLocations,
|
|
@@ -36,27 +36,27 @@ import "../chunks/chunk-ZKSC7QVE.js";
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|
|
36
36
|
import "../chunks/chunk-HNWJ4B7S.js";
|
|
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37
|
import {
|
|
38
38
|
figureSvg
|
|
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|
-
} from "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-Q2AMKXAX.js";
|
|
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40
|
import "../chunks/chunk-V4YML3GR.js";
|
|
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|
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import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-T2LYWZ5Q.js";
|
|
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42
|
import "../chunks/chunk-4DMSPNYV.js";
|
|
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|
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|
|
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44
|
import {
|
|
45
45
|
genesOnRow,
|
|
46
46
|
placeRowGenes
|
|
47
|
-
} from "../chunks/chunk-
|
|
47
|
+
} from "../chunks/chunk-A6ABMJR5.js";
|
|
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48
|
import "../chunks/chunk-JSUCGZ6K.js";
|
|
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49
|
import "../chunks/chunk-TQ26XEFL.js";
|
|
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50
|
import "../chunks/chunk-4JDO7ZLN.js";
|
|
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51
|
import "../chunks/chunk-7YSIP3O2.js";
|
|
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52
|
import "../chunks/chunk-HEYIAMTC.js";
|
|
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|
-
import "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-TOGXPJK7.js";
|
|
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|
+
import "../chunks/chunk-OKPSS5PG.js";
|
|
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|
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import "../chunks/chunk-6ROK45LO.js";
|
|
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56
|
import "../chunks/chunk-LOCJN3BZ.js";
|
|
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|
-
import "../chunks/chunk-
|
|
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|
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import "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-QOY6SPOS.js";
|
|
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|
+
import "../chunks/chunk-JQYK6GVJ.js";
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|
+
import "../chunks/chunk-EH5OIV2E.js";
|
|
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60
|
import "../chunks/chunk-4KBZ7WPP.js";
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61
|
import "../chunks/chunk-G2FD7S3C.js";
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|
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62
|
import "../chunks/chunk-IZKM4NY7.js";
|
|
@@ -70,17 +70,17 @@ import {
|
|
|
70
70
|
import "../chunks/chunk-LODKC7PJ.js";
|
|
71
71
|
import "../chunks/chunk-VQ353UDK.js";
|
|
72
72
|
import "../chunks/chunk-ZANALBSX.js";
|
|
73
|
-
import "../chunks/chunk-
|
|
74
|
-
import "../chunks/chunk-
|
|
73
|
+
import "../chunks/chunk-5SW3PTHO.js";
|
|
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|
+
import "../chunks/chunk-2AVTTUP2.js";
|
|
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75
|
import "../chunks/chunk-OPPVSPEF.js";
|
|
76
76
|
import "../chunks/chunk-NAYS472K.js";
|
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-4FRX2SPT.js";
|
|
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78
|
import "../chunks/chunk-VPE4AYP7.js";
|
|
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79
|
import "../chunks/chunk-TUMJNAOL.js";
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|
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80
|
import "../chunks/chunk-QYBZZI5H.js";
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|
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81
|
import "../chunks/chunk-CFXXFHRK.js";
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|
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82
|
import "../chunks/chunk-7L7MN2OM.js";
|
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|
-
import "../chunks/chunk-
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|
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|
+
import "../chunks/chunk-L4DBSRA2.js";
|
|
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84
|
import "../chunks/chunk-5ORP7EFJ.js";
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85
|
import "../chunks/chunk-VSSIYQYF.js";
|
|
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86
|
import "../chunks/chunk-LG2UK4MB.js";
|
package/dist/cli/fold.js
CHANGED
|
@@ -10,16 +10,16 @@ import {
|
|
|
10
10
|
} from "../chunks/chunk-4BYGFDQB.js";
|
|
11
11
|
import {
|
|
12
12
|
loadGraph
|
|
13
|
-
} from "../chunks/chunk-
|
|
13
|
+
} from "../chunks/chunk-2AVTTUP2.js";
|
|
14
14
|
import "../chunks/chunk-OPPVSPEF.js";
|
|
15
15
|
import "../chunks/chunk-NAYS472K.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
16
|
+
import "../chunks/chunk-4FRX2SPT.js";
|
|
17
17
|
import "../chunks/chunk-VPE4AYP7.js";
|
|
18
18
|
import "../chunks/chunk-TUMJNAOL.js";
|
|
19
19
|
import "../chunks/chunk-QYBZZI5H.js";
|
|
20
20
|
import "../chunks/chunk-CFXXFHRK.js";
|
|
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21
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
22
|
-
import "../chunks/chunk-
|
|
22
|
+
import "../chunks/chunk-L4DBSRA2.js";
|
|
23
23
|
import "../chunks/chunk-VSSIYQYF.js";
|
|
24
24
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
25
25
|
import "../chunks/chunk-HNNP5QUN.js";
|