@jbrowse/bandage-core 10.3.1 → 11.1.0

package/dist/index.js

@@ -1,17 +1,27 @@
 import {
   wheelZoomFactor
 } from "./chunks/chunk-TDQLINVI.js";
+import {
+  connectorAt,
+  drawLitConnector,
+  drawTubeMapConnectors,
+  tubeMapConnectors
+} from "./chunks/chunk-2ZT7ZF7A.js";
 import {
   drawTubeMap,
   drawTubeMapHighlight,
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "./chunks/chunk-WYJQIC75.js";
+} from "./chunks/chunk-ZUL52ZX2.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
 } from "./chunks/chunk-SI3BB4DO.js";
+import {
+  referenceKnots,
+  warpX
+} from "./chunks/chunk-MYDHU2UV.js";
 import {
   drawTubeMapGenes,
   tubeMapGenes
@@ -20,10 +30,6 @@ import "./chunks/chunk-BX4AUMZE.js";
 import {
   tubeMapNodeColors
 } from "./chunks/chunk-XVS52NMZ.js";
-import {
-  referenceKnots,
-  warpX
-} from "./chunks/chunk-MYDHU2UV.js";
 import {
   drawTubeMapRuler,
   referenceBoxes,
@@ -32,16 +38,10 @@ import {
 } from "./chunks/chunk-HSVFCA2J.js";
 import {
   bundleRoutes
-} from "./chunks/chunk-R2PJKD3Y.js";
-import {
-  connectorAt,
-  drawLitConnector,
-  drawTubeMapConnectors,
-  tubeMapConnectors
-} from "./chunks/chunk-2ZT7ZF7A.js";
+} from "./chunks/chunk-RETNT73O.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-OXRUPNSV.js";
+} from "./chunks/chunk-RNYPCQZ3.js";
 import {
   graphBubbles,
   superbubblesFromGraph
@@ -52,6 +52,9 @@ import {
 import {
   bubbleSubgraph
 } from "./chunks/chunk-PNMJFFNB.js";
+import {
+  backboneGenes
+} from "./chunks/chunk-7BTO7MZS.js";
 import {
   genesFromBed,
   genesFromGff3Lines,
@@ -83,7 +86,7 @@ import {
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-EWLXU3UG.js";
+} from "./chunks/chunk-JFHYG25O.js";
 import {
   svgCanvas
 } from "./chunks/chunk-V4YML3GR.js";
@@ -98,7 +101,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-SFP3E4RI.js";
+} from "./chunks/chunk-IZ6Y5D23.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -113,6 +116,7 @@ import {
   alongRow,
   callTickInk,
   coalesceRuns,
+  gapStyle,
   genesOnRow,
   placeRowGenes,
   readoutPlacement,
@@ -125,7 +129,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-ZJBOM73S.js";
+} from "./chunks/chunk-XZ6PQBU6.js";
 import {
   Canvas2DRenderer
 } from "./chunks/chunk-EJRJAAN7.js";
@@ -137,9 +141,6 @@ import {
   exonOutlineTree,
   exonStretches
 } from "./chunks/chunk-JSUCGZ6K.js";
-import {
-  genePins
-} from "./chunks/chunk-BS6HPYCZ.js";
 import {
   HALO_FACTOR,
   LEGEND_INSET_PX,
@@ -158,7 +159,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-CHNESV7L.js";
+} from "./chunks/chunk-OI4YVAMM.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -168,10 +169,10 @@ import {
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-AZ4EEF6Q.js";
-import "./chunks/chunk-GJU6BJJA.js";
-import "./chunks/chunk-FW2R7UDZ.js";
+} from "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
+import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
 import "./chunks/chunk-MYLAJDKB.js";
 import "./chunks/chunk-C44YRP5F.js";
@@ -182,7 +183,7 @@ import {
   cutGbzRegion,
   openGbz,
   parseRegion
-} from "./chunks/chunk-M5NPD55W.js";
+} from "./chunks/chunk-TUQKGAK3.js";
 import {
   compactTables,
   cutWindowGFA,
@@ -191,11 +192,14 @@ import {
   referencePathQuery,
   referenceSamplesOf,
   resolveReferenceSample
-} from "./chunks/chunk-GIHTHYXY.js";
+} from "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
+import {
+  genePins
+} from "./chunks/chunk-77EGQQJU.js";
 import {
   version
-} from "./chunks/chunk-AQCOIE5R.js";
+} from "./chunks/chunk-Y3FDMDNT.js";
 import {
   axisScaleOf,
   contains,
@@ -203,8 +207,8 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-BKEZLETL.js";
-import "./chunks/chunk-QH2MIXBA.js";
+} from "./chunks/chunk-AI5PTOSV.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -212,7 +216,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-YZQI35UJ.js";
+} from "./chunks/chunk-DR24UTRS.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -220,12 +224,12 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-DO62DG26.js";
+} from "./chunks/chunk-TABI4JEU.js";
 import {
   rangeText,
   walkKey,
   walkPosition
-} from "./chunks/chunk-CGFPFBT2.js";
+} from "./chunks/chunk-D4ZFRBB4.js";
 import {
   buildGeometry,
   computeReferenceRamp
@@ -242,11 +246,11 @@ import "./chunks/chunk-WA5WNP6V.js";
 import {
   walkRowLabels,
   walkRowsExtent
-} from "./chunks/chunk-A2TJ5UX6.js";
+} from "./chunks/chunk-YHJ5JLBI.js";
 import {
   filterSamples,
   walkRows
-} from "./chunks/chunk-OOIOX36I.js";
+} from "./chunks/chunk-DEDD7TFJ.js";
 import {
   pathColorsLegible,
   pathLegend,
@@ -262,7 +266,7 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-D7WIYPG3.js";
+} from "./chunks/chunk-W6EXQDV5.js";
 import {
   ENGINE_DEFAULTS,
   FIT_PADDING,
@@ -275,18 +279,18 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-KMBE2Q42.js";
+} from "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
 import {
   graphFromTables,
   graphTablesGFA
-} from "./chunks/chunk-DBLV7PGG.js";
+} from "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import {
@@ -301,7 +305,16 @@ import {
 } from "./chunks/chunk-234NFZS4.js";
 import {
   gfaTables
-} from "./chunks/chunk-Z6XZWPXK.js";
+} from "./chunks/chunk-DZR37KXT.js";
+import {
+  END_STOP_TAG,
+  GAP_CAUSE_TEXT,
+  OUTSIDE_TEXT,
+  START_STOP_TAG,
+  gapParts,
+  parseStopTag,
+  stopTag
+} from "./chunks/chunk-EIY2SKD3.js";
 import {
   PathVisits,
   PathVisitsBuilder
@@ -359,6 +372,7 @@ export {
   BUBBLE_SPREADS,
   COLOR_SCHEMES,
   Canvas2DRenderer,
+  END_STOP_TAG,
   ENGINE_DEFAULTS,
   EXON_COLOR,
   FACET_FIELDS,
@@ -368,6 +382,7 @@ export {
   FIGURE_DEFAULTS,
   FIT_PADDING,
   FORCE_LAYOUT_LABEL,
+  GAP_CAUSE_TEXT,
   HALO_FACTOR,
   HPRC_GBZ,
   LABELLED_ROW_PX,
@@ -379,12 +394,14 @@ export {
   LAYOUT_QUALITIES,
   LEGEND_INSET_PX,
   NODE_WIDTHS,
+  OUTSIDE_TEXT,
   PathVisits,
   PathVisitsBuilder,
   RAMP_GRADIENT_CSS,
   REFERENCE_RAMP_MAX_HUE,
   REFERENCE_STRIP_ZONE_PX,
   ROW_HEIGHT_PX,
+  START_STOP_TAG,
   BAR_PX as WALK_BAR_PX,
   CALL_TICK as WALK_CALL_TICK,
   DISAGREES as WALK_DISAGREES,
@@ -402,6 +419,7 @@ export {
   assemblyWalk,
   axisScaleOf,
   backboneAssembly,
+  backboneGenes,
   bubbleHalos,
   bubbleSegmentIds,
   bubbleSubgraph,
@@ -454,6 +472,8 @@ export {
   fitTransform,
   forceLayout,
   formatBp,
+  gapParts,
+  gapStyle,
   geneCoverageNote,
   genePins,
   genesFromBed,
@@ -487,6 +507,7 @@ export {
   panSNHaplotype,
   panSNSample,
   parseRegion,
+  parseStopTag,
   pathColorsLegible,
   pathLegend,
   placeRowGenes,
@@ -515,6 +536,7 @@ export {
   screenToLayout,
   segmentAt,
   serializeEl,
+  stopTag,
   stressLayout,
   stripBlockAt,
   stripGeneGaps,

package/dist/layout/forceCache.js

@@ -1,18 +1,19 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-OXRUPNSV.js";
-import "../chunks/chunk-KMBE2Q42.js";
+} from "../chunks/chunk-RNYPCQZ3.js";
+import "../chunks/chunk-KDU4EF66.js";
 import "../chunks/chunk-3PZSBNLI.js";
 import "../chunks/chunk-CKUVEHSS.js";
 import "../chunks/chunk-OPPVSPEF.js";
 import "../chunks/chunk-VPE4AYP7.js";
-import "../chunks/chunk-NZTYV3JL.js";
+import "../chunks/chunk-FFHJGWDK.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-DBLV7PGG.js";
+import "../chunks/chunk-3XSRT7RQ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
-import "../chunks/chunk-Z6XZWPXK.js";
+import "../chunks/chunk-DZR37KXT.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-BZFOFC4D.js";
 import "../chunks/chunk-HKYXWZQS.js";

package/dist/layout/tubeMapLayout.js

@@ -5,12 +5,13 @@ import {
   tubeMapLayout,
   tubeMapReferenceLayout,
   tubeMapTracks
-} from "../chunks/chunk-FW2R7UDZ.js";
+} from "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";

package/dist/layout/walkRowDraw.js

@@ -5,14 +5,18 @@ import {
   GAP_PX,
   GENE_INK,
   LABELLED_ROW_PX,
+  MISSING_INK,
+  MISSING_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
   UNBACKED_TICK,
+  UNKNOWN_GAP,
   alongRow,
   boxesGenes,
   callTickInk,
   coalesceRuns,
+  gapStyle,
   genesOnRow,
   placeRowGenes,
   readoutPlacement,
@@ -25,7 +29,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-ZJBOM73S.js";
+} from "../chunks/chunk-XZ6PQBU6.js";
 import "../chunks/chunk-H2H4Y3TV.js";
 import "../chunks/chunk-SWCULW6S.js";
 import "../chunks/chunk-G2FD7S3C.js";
@@ -35,6 +39,7 @@ import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";
@@ -54,14 +59,18 @@ export {
   GAP_PX,
   GENE_INK,
   LABELLED_ROW_PX,
+  MISSING_INK,
+  MISSING_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
   UNBACKED_TICK,
+  UNKNOWN_GAP,
   alongRow,
   boxesGenes,
   callTickInk,
   coalesceRuns,
+  gapStyle,
   genesOnRow,
   placeRowGenes,
   readoutPlacement,

package/dist/layout/walkRowLayout.js

@@ -4,9 +4,10 @@ import {
   walkRowLabels,
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-A2TJ5UX6.js";
-import "../chunks/chunk-OOIOX36I.js";
+} from "../chunks/chunk-YHJ5JLBI.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-CPMHA4W5.js";
 import "../chunks/chunk-BSOZW3FC.js";

package/dist/layout/walkRows.js

@@ -2,8 +2,9 @@ import {
   filterSamples,
   referenceWalkName,
   walkRows
-} from "../chunks/chunk-OOIOX36I.js";
+} from "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-BSOZW3FC.js";
 import "../chunks/chunk-RJWPJCIB.js";

package/dist/layout/walkStrip.js

@@ -9,21 +9,22 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-SFP3E4RI.js";
+} from "../chunks/chunk-IZ6Y5D23.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-ZJBOM73S.js";
+} from "../chunks/chunk-XZ6PQBU6.js";
 import "../chunks/chunk-H2H4Y3TV.js";
 import "../chunks/chunk-SWCULW6S.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";
-import "../chunks/chunk-A2TJ5UX6.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-YHJ5JLBI.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";

package/dist/layoutModes.js

@@ -4,20 +4,21 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-AZ4EEF6Q.js";
-import "./chunks/chunk-GJU6BJJA.js";
-import "./chunks/chunk-FW2R7UDZ.js";
+} from "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
+import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
 import "./chunks/chunk-MYLAJDKB.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-UAFATXYA.js";
 import "./chunks/chunk-3GLG3ZLE.js";
-import "./chunks/chunk-A2TJ5UX6.js";
-import "./chunks/chunk-OOIOX36I.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-PFRQBCGC.js";
 import "./chunks/chunk-HMXCN6PG.js";

package/dist/pipeline.js

@@ -11,18 +11,19 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-KMBE2Q42.js";
+} from "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-DBLV7PGG.js";
+import "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-BZFOFC4D.js";
 import "./chunks/chunk-HKYXWZQS.js";

package/dist/tubeMap/bundle.js

@@ -1,12 +1,13 @@
 import {
   bundleRoutes
-} from "../chunks/chunk-R2PJKD3Y.js";
-import "../chunks/chunk-FW2R7UDZ.js";
+} from "../chunks/chunk-RETNT73O.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";

package/dist/tubeMap/coarsen.js

@@ -1,13 +1,14 @@
 import {
   coarsenTubeMap,
   lastAtMost
-} from "../chunks/chunk-MWOVW4AH.js";
-import "../chunks/chunk-FW2R7UDZ.js";
+} from "../chunks/chunk-V5MAL7LU.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";

package/dist/tubeMap/deviations.js

@@ -1,18 +1,19 @@
 import {
   lastAtMost
-} from "../chunks/chunk-MWOVW4AH.js";
+} from "../chunks/chunk-V5MAL7LU.js";
 import {
   boxX,
   referenceBoxes
 } from "../chunks/chunk-HSVFCA2J.js";
-import "../chunks/chunk-FW2R7UDZ.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import {
   pathOrigin
 } from "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";

package/dist/tubeMap/draw.js

@@ -8,13 +8,14 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "../chunks/chunk-WYJQIC75.js";
-import "../chunks/chunk-BX4AUMZE.js";
+} from "../chunks/chunk-ZUL52ZX2.js";
 import "../chunks/chunk-MYDHU2UV.js";
+import "../chunks/chunk-BX4AUMZE.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-OOIOX36I.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-BSOZW3FC.js";
 import "../chunks/chunk-RJWPJCIB.js";

package/dist/types/figureData.d.ts

@@ -4,7 +4,7 @@ import type { LayoutEngineKind } from './layoutEngines.js';
 import type { LayoutModeValue } from './layoutModes.js';
 import type { Graph, LayoutResult } from './types.js';
 import type { WalkLayer } from './walkEncoding.js';
-export type FigureDataOptions = Pick<FigureOptions, 'width' | 'height' | 'walks' | 'facet' | 'colorScheme' | 'nodeWidth' | 'showDeletionEdges' | 'linearLayout' | 'contigThickness' | 'connectorThickness' | 'region' | 'referenceName' | 'colorDomain' | 'fitToDrawing'>;
+export type FigureDataOptions = Pick<FigureOptions, 'width' | 'height' | 'walks' | 'facet' | 'colorScheme' | 'nodeWidth' | 'showDeletionEdges' | 'linearLayout' | 'contigThickness' | 'connectorThickness' | 'region' | 'referenceName' | 'colorDomain' | 'fitToDrawing' | 'genes'>;
 type Columns<T> = {
     [K in keyof T]: T[K][];
 };
@@ -35,6 +35,27 @@ interface EdgeRow {
     width: number;
     deletion: boolean;
 }
+interface KeyRow {
+    panel: string;
+    walk: string;
+    note: string;
+    scale: string;
+    stops: string;
+}
+interface PinRow {
+    gene: string;
+    x: number;
+    y: number;
+    covered: number;
+    bp: number;
+}
+interface ExonRow {
+    gene: string;
+    node: string;
+    stretch: number;
+    x: number;
+    y: number;
+}
 interface ArrowRow {
     panel: string;
     edge: number;
@@ -62,6 +83,10 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
         key: string[];
         range: string[];
     };
+    keys: Columns<KeyRow>;
+    pins: Columns<PinRow>;
+    exons: Columns<ExonRow>;
+    walkNames: string[];
     nodes: Columns<NodeRow>;
     edges: Columns<EdgeRow>;
     arrows: Columns<ArrowRow>;
@@ -77,7 +102,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
         y: number[];
     };
 };
-export interface GfaFigureSpec extends Omit<FigureDataOptions, 'region' | 'walks'> {
+export interface GfaFigureSpec extends Omit<FigureDataOptions, 'region' | 'walks' | 'genes'> {
     region?: string;
     walks?: (string | WalkLayer)[];
     layout?: LayoutModeValue;
@@ -109,6 +134,10 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
         key: string[];
         range: string[];
     };
+    keys: Columns<KeyRow>;
+    pins: Columns<PinRow>;
+    exons: Columns<ExonRow>;
+    walkNames: string[];
     nodes: Columns<NodeRow>;
     edges: Columns<EdgeRow>;
     arrows: Columns<ArrowRow>;