@jbrowse/bandage-core 10.3.1 → 11.1.0

package/dist/cli/figure.js

@@ -3,21 +3,21 @@ import {
   decodeText
 } from "../chunks/chunk-O4EGE27I.js";
 import {
-  genesFromText
-} from "../chunks/chunk-G6UIYQZR.js";
+  backboneGenes
+} from "../chunks/chunk-7BTO7MZS.js";
+import "../chunks/chunk-G6UIYQZR.js";
 import {
   figureSvg
-} from "../chunks/chunk-EWLXU3UG.js";
+} from "../chunks/chunk-JFHYG25O.js";
 import "../chunks/chunk-V4YML3GR.js";
-import "../chunks/chunk-SFP3E4RI.js";
+import "../chunks/chunk-IZ6Y5D23.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-ZJBOM73S.js";
+} from "../chunks/chunk-XZ6PQBU6.js";
 import "../chunks/chunk-EJRJAAN7.js";
 import "../chunks/chunk-RBCE2OQH.js";
 import "../chunks/chunk-JSUCGZ6K.js";
-import "../chunks/chunk-BS6HPYCZ.js";
 import "../chunks/chunk-PSCSZSVK.js";
 import "../chunks/chunk-OMUPUB4J.js";
 import "../chunks/chunk-3VCKBSML.js";
@@ -25,17 +25,17 @@ import "../chunks/chunk-H2H4Y3TV.js";
 import {
   laidOutGraph,
   walkLayers
-} from "../chunks/chunk-CHNESV7L.js";
+} from "../chunks/chunk-OI4YVAMM.js";
 import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind
 } from "../chunks/chunk-JMABOQWL.js";
 import {
   LAYOUT_MODES
-} from "../chunks/chunk-AZ4EEF6Q.js";
-import "../chunks/chunk-GJU6BJJA.js";
-import "../chunks/chunk-FW2R7UDZ.js";
+} from "../chunks/chunk-NGUM77EP.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
+import "../chunks/chunk-GJU6BJJA.js";
 import "../chunks/chunk-GJLZ2MKE.js";
 import "../chunks/chunk-MYLAJDKB.js";
 import "../chunks/chunk-C44YRP5F.js";
@@ -47,45 +47,43 @@ import {
   haplotypeIndexBeside,
   openGbz,
   parseRegion
-} from "../chunks/chunk-M5NPD55W.js";
-import "../chunks/chunk-GIHTHYXY.js";
+} from "../chunks/chunk-TUQKGAK3.js";
+import "../chunks/chunk-NMWQUFPF.js";
 import "../chunks/chunk-HNWJ4B7S.js";
-import "../chunks/chunk-AQCOIE5R.js";
-import "../chunks/chunk-BKEZLETL.js";
-import "../chunks/chunk-QH2MIXBA.js";
+import "../chunks/chunk-77EGQQJU.js";
+import "../chunks/chunk-Y3FDMDNT.js";
+import "../chunks/chunk-AI5PTOSV.js";
+import "../chunks/chunk-IVOK5V3H.js";
 import "../chunks/chunk-LOCJN3BZ.js";
-import "../chunks/chunk-YZQI35UJ.js";
-import "../chunks/chunk-DO62DG26.js";
-import "../chunks/chunk-CGFPFBT2.js";
+import "../chunks/chunk-DR24UTRS.js";
+import "../chunks/chunk-TABI4JEU.js";
+import "../chunks/chunk-D4ZFRBB4.js";
 import "../chunks/chunk-SWCULW6S.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";
-import "../chunks/chunk-A2TJ5UX6.js";
+import "../chunks/chunk-YHJ5JLBI.js";
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-OOIOX36I.js";
+} from "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
-import "../chunks/chunk-D7WIYPG3.js";
-import "../chunks/chunk-KMBE2Q42.js";
+import "../chunks/chunk-W6EXQDV5.js";
+import "../chunks/chunk-KDU4EF66.js";
 import "../chunks/chunk-3PZSBNLI.js";
 import "../chunks/chunk-CKUVEHSS.js";
 import "../chunks/chunk-OPPVSPEF.js";
 import "../chunks/chunk-VPE4AYP7.js";
-import "../chunks/chunk-NZTYV3JL.js";
+import "../chunks/chunk-FFHJGWDK.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-DBLV7PGG.js";
+import "../chunks/chunk-3XSRT7RQ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
-import {
-  featuresOnBackbone,
-  graphBackbone,
-  refNameBinding
-} from "../chunks/chunk-234NFZS4.js";
-import "../chunks/chunk-Z6XZWPXK.js";
+import "../chunks/chunk-234NFZS4.js";
+import "../chunks/chunk-DZR37KXT.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-PFRQBCGC.js";
 import "../chunks/chunk-HMXCN6PG.js";
@@ -141,51 +139,28 @@ async function text(location) {
   return decodeText(bytes);
 }
 async function readGenes(genes, graph, resolve) {
-  const backbone = graphBackbone(graph);
-  if (!backbone) {
-    return [];
-  }
-  const bind = refNameBinding(
-    backbone.contigs.map((c) => c.refName),
-    genes.refNames
-  );
-  const { names, features } = genes.index ? await indexedGenes(
-    resolve(genes.file),
-    resolve(genes.index),
-    genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3"),
-    backbone.contigs,
-    bind
-  ) : namedBy(genesFromText(await text(resolve(genes.file)), genes.format));
-  if (!names.some((name) => bind(name) !== void 0)) {
+  const file = resolve(genes.file);
+  const read = await backboneGenes(graph, {
+    ...genes.index ? {
+      indexed: tabixFile(file, resolve(genes.index)),
+      format: genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3")
+    } : { text: await text(file), format: genes.format },
+    refNames: genes.refNames
+  });
+  if (read.unbound) {
+    const { names, contigs } = read.unbound;
     const shown = names.slice(0, 4).join(", ");
     console.warn(
-      `bandage-figure: no sequence in ${genes.file} names ${backbone.contigs.map((c) => c.contig).join(", ")}` + (names.length ? `; it has ${shown}${names.length > 4 ? ", \u2026" : ""}` : "") + `. Give the file's name under genes.refNames, as { "chr6": "NC_000006.12" }`
+      `bandage-figure: no sequence in ${genes.file} names ${contigs.join(", ")}` + (names.length ? `; it has ${shown}${names.length > 4 ? ", \u2026" : ""}` : "") + `. Give the file's name under genes.refNames, as { "chr6": "NC_000006.12" }`
     );
   }
-  return featuresOnBackbone(features, backbone, genes.refNames);
+  return read.genes;
 }
-function namedBy(features) {
-  return { names: [...new Set(features.map((f) => f.refName))], features };
-}
-async function indexedGenes(file, index, format, contigs, bind) {
+function tabixFile(file, index) {
   const csi = index.endsWith(".csi");
-  const tabix = new TabixIndexedFile(
+  return new TabixIndexedFile(
     isUrl(file) ? { url: file, ...csi ? { csiUrl: index } : { tbiUrl: index } } : { path: file, ...csi ? { csiPath: index } : { tbiPath: index } }
   );
-  const names = await tabix.getReferenceSequenceNames();
-  const lines = [];
-  for (const contig of contigs) {
-    const name = names.find((n) => bind(n) === contig.refName);
-    if (name !== void 0) {
-      await tabix.getLines(name, contig.start, contig.end, {
-        lineCallback: (line) => lines.push(line)
-      });
-    }
-  }
-  return {
-    names,
-    features: genesFromText(lines.join("\n"), format)
-  };
 }
 async function exists(location) {
   try {

package/dist/cli/fold.js

@@ -10,18 +10,19 @@ import {
 } from "../chunks/chunk-SOMZGDVS.js";
 import {
   loadGraph
-} from "../chunks/chunk-KMBE2Q42.js";
+} from "../chunks/chunk-KDU4EF66.js";
 import "../chunks/chunk-3PZSBNLI.js";
 import "../chunks/chunk-CKUVEHSS.js";
 import "../chunks/chunk-OPPVSPEF.js";
 import "../chunks/chunk-VPE4AYP7.js";
-import "../chunks/chunk-NZTYV3JL.js";
+import "../chunks/chunk-FFHJGWDK.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-DBLV7PGG.js";
+import "../chunks/chunk-3XSRT7RQ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
-import "../chunks/chunk-Z6XZWPXK.js";
+import "../chunks/chunk-DZR37KXT.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-BZFOFC4D.js";
 import "../chunks/chunk-HKYXWZQS.js";

package/dist/figure.js

@@ -1,46 +1,47 @@
 import {
   figureSvg
-} from "./chunks/chunk-EWLXU3UG.js";
+} from "./chunks/chunk-JFHYG25O.js";
 import "./chunks/chunk-V4YML3GR.js";
-import "./chunks/chunk-SFP3E4RI.js";
-import "./chunks/chunk-ZJBOM73S.js";
+import "./chunks/chunk-IZ6Y5D23.js";
+import "./chunks/chunk-XZ6PQBU6.js";
 import "./chunks/chunk-EJRJAAN7.js";
 import "./chunks/chunk-RBCE2OQH.js";
 import "./chunks/chunk-JSUCGZ6K.js";
-import "./chunks/chunk-BS6HPYCZ.js";
 import "./chunks/chunk-PSCSZSVK.js";
 import "./chunks/chunk-OMUPUB4J.js";
 import "./chunks/chunk-3VCKBSML.js";
 import "./chunks/chunk-H2H4Y3TV.js";
-import "./chunks/chunk-AQCOIE5R.js";
-import "./chunks/chunk-BKEZLETL.js";
-import "./chunks/chunk-QH2MIXBA.js";
+import "./chunks/chunk-77EGQQJU.js";
+import "./chunks/chunk-Y3FDMDNT.js";
+import "./chunks/chunk-AI5PTOSV.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-YZQI35UJ.js";
-import "./chunks/chunk-DO62DG26.js";
-import "./chunks/chunk-CGFPFBT2.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
+import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-A2TJ5UX6.js";
-import "./chunks/chunk-OOIOX36I.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
-import "./chunks/chunk-D7WIYPG3.js";
-import "./chunks/chunk-KMBE2Q42.js";
+import "./chunks/chunk-W6EXQDV5.js";
+import "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-DBLV7PGG.js";
+import "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import "./chunks/chunk-234NFZS4.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-PFRQBCGC.js";
 import "./chunks/chunk-HMXCN6PG.js";

package/dist/figureData.js

@@ -3,49 +3,51 @@ import {
   gfaFigureData,
   laidOutGraph,
   walkLayers
-} from "./chunks/chunk-CHNESV7L.js";
+} from "./chunks/chunk-OI4YVAMM.js";
 import "./chunks/chunk-JMABOQWL.js";
-import "./chunks/chunk-AZ4EEF6Q.js";
-import "./chunks/chunk-GJU6BJJA.js";
-import "./chunks/chunk-FW2R7UDZ.js";
+import "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
+import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
 import "./chunks/chunk-MYLAJDKB.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-UAFATXYA.js";
 import "./chunks/chunk-3GLG3ZLE.js";
-import "./chunks/chunk-M5NPD55W.js";
-import "./chunks/chunk-GIHTHYXY.js";
+import "./chunks/chunk-TUQKGAK3.js";
+import "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
-import "./chunks/chunk-AQCOIE5R.js";
-import "./chunks/chunk-BKEZLETL.js";
-import "./chunks/chunk-QH2MIXBA.js";
+import "./chunks/chunk-77EGQQJU.js";
+import "./chunks/chunk-Y3FDMDNT.js";
+import "./chunks/chunk-AI5PTOSV.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-YZQI35UJ.js";
-import "./chunks/chunk-DO62DG26.js";
-import "./chunks/chunk-CGFPFBT2.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
+import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-A2TJ5UX6.js";
-import "./chunks/chunk-OOIOX36I.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
-import "./chunks/chunk-D7WIYPG3.js";
-import "./chunks/chunk-KMBE2Q42.js";
+import "./chunks/chunk-W6EXQDV5.js";
+import "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-DBLV7PGG.js";
+import "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import "./chunks/chunk-234NFZS4.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-PFRQBCGC.js";
 import "./chunks/chunk-HMXCN6PG.js";

package/dist/figureScene.js

@@ -1,32 +1,33 @@
 import {
   figureScene
-} from "./chunks/chunk-QH2MIXBA.js";
+} from "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-YZQI35UJ.js";
-import "./chunks/chunk-DO62DG26.js";
-import "./chunks/chunk-CGFPFBT2.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
+import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-A2TJ5UX6.js";
-import "./chunks/chunk-OOIOX36I.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
-import "./chunks/chunk-D7WIYPG3.js";
-import "./chunks/chunk-KMBE2Q42.js";
+import "./chunks/chunk-W6EXQDV5.js";
+import "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-DBLV7PGG.js";
+import "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import "./chunks/chunk-234NFZS4.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-PFRQBCGC.js";
 import "./chunks/chunk-HMXCN6PG.js";

package/dist/figureSettings.js

@@ -1,19 +1,20 @@
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-D7WIYPG3.js";
-import "./chunks/chunk-KMBE2Q42.js";
+} from "./chunks/chunk-W6EXQDV5.js";
+import "./chunks/chunk-KDU4EF66.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-VPE4AYP7.js";
-import "./chunks/chunk-NZTYV3JL.js";
+import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-DBLV7PGG.js";
+import "./chunks/chunk-3XSRT7RQ.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-BZFOFC4D.js";
 import "./chunks/chunk-HKYXWZQS.js";

package/dist/gbzCut.js

@@ -5,11 +5,12 @@ import {
   haplotypeIndexBeside,
   openGbz,
   parseRegion
-} from "./chunks/chunk-M5NPD55W.js";
-import "./chunks/chunk-GIHTHYXY.js";
+} from "./chunks/chunk-TUQKGAK3.js";
+import "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
 import "./chunks/chunk-234NFZS4.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-BSOZW3FC.js";
 import "./chunks/chunk-RJWPJCIB.js";

package/dist/gbzWindow.js

@@ -12,10 +12,11 @@ import {
   referencePathQuery,
   referenceSamplesOf,
   resolveReferenceSample
-} from "./chunks/chunk-GIHTHYXY.js";
+} from "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
 import "./chunks/chunk-234NFZS4.js";
-import "./chunks/chunk-Z6XZWPXK.js";
+import "./chunks/chunk-DZR37KXT.js";
+import "./chunks/chunk-EIY2SKD3.js";
 import "./chunks/chunk-ZPZ7GNBT.js";
 import "./chunks/chunk-BSOZW3FC.js";
 import "./chunks/chunk-RJWPJCIB.js";

package/dist/genes/backboneGenes.js

@@ -0,0 +1,12 @@
+import {
+  backboneGenes
+} from "../chunks/chunk-7BTO7MZS.js";
+import "../chunks/chunk-G6UIYQZR.js";
+import "../chunks/chunk-234NFZS4.js";
+import "../chunks/chunk-BSOZW3FC.js";
+import "../chunks/chunk-RJWPJCIB.js";
+import "../chunks/chunk-HOAIOEI7.js";
+import "../chunks/chunk-4XWZNPQ2.js";
+export {
+  backboneGenes
+};

package/dist/genes/genePins.js

@@ -1,6 +1,6 @@
 import {
   genePins
-} from "../chunks/chunk-BS6HPYCZ.js";
+} from "../chunks/chunk-77EGQQJU.js";
 import "../chunks/chunk-BZFOFC4D.js";
 import "../chunks/chunk-UBQSRCWR.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/gfa/gfaConverter.js

@@ -1,9 +1,10 @@
 import {
   convertGFAToGraph
-} from "../chunks/chunk-NZTYV3JL.js";
+} from "../chunks/chunk-FFHJGWDK.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
 import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-BSOZW3FC.js";
 import "../chunks/chunk-RJWPJCIB.js";

package/dist/gfa/gfaTables.js

@@ -1,6 +1,7 @@
 import {
   gfaTables
-} from "../chunks/chunk-Z6XZWPXK.js";
+} from "../chunks/chunk-DZR37KXT.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 export {
   gfaTables

package/dist/gfa/graphTables.js

@@ -1,7 +1,8 @@
 import {
   graphFromTables,
   graphTablesGFA
-} from "../chunks/chunk-DBLV7PGG.js";
+} from "../chunks/chunk-3XSRT7RQ.js";
+import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
 import "../chunks/chunk-4XWZNPQ2.js";
 export {

package/dist/gfa/walkStops.js

@@ -0,0 +1,28 @@
+import {
+  END_STOP_TAG,
+  GAP_CAUSE_TEXT,
+  OUTSIDE_TEXT,
+  START_STOP_TAG,
+  StopColumns,
+  gapParts,
+  parseStopTag,
+  stopAt,
+  stopFields,
+  stopTag,
+  walkStopFields,
+  walkStopTags
+} from "../chunks/chunk-EIY2SKD3.js";
+export {
+  END_STOP_TAG,
+  GAP_CAUSE_TEXT,
+  OUTSIDE_TEXT,
+  START_STOP_TAG,
+  StopColumns,
+  gapParts,
+  parseStopTag,
+  stopAt,
+  stopFields,
+  stopTag,
+  walkStopFields,
+  walkStopTags
+};