@jbrowse/bandage-core 10.3.0 → 11.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (82) hide show
  1. package/README.md +5 -0
  2. package/dist/bubbles/popBubble.js +2 -2
  3. package/dist/bubbles/superbubbles.js +3 -3
  4. package/dist/chunks/{chunk-EHXBZ5JZ.js → chunk-2Q22S52W.js} +1 -1
  5. package/dist/chunks/{chunk-IYALCKNB.js → chunk-3GP3KT5L.js} +1 -1
  6. package/dist/chunks/{chunk-A54O52XZ.js → chunk-3UST3ZQE.js} +1 -1
  7. package/dist/chunks/{chunk-DBLV7PGG.js → chunk-3XSRT7RQ.js} +16 -2
  8. package/dist/chunks/{chunk-7JGLJK44.js → chunk-5LTZVKZQ.js} +10 -10
  9. package/dist/chunks/{chunk-PTQPTDZH.js → chunk-6OP4HPXG.js} +1 -1
  10. package/dist/chunks/{chunk-WONB6LMC.js → chunk-AI5PTOSV.js} +1 -1
  11. package/dist/chunks/{chunk-LGJBB5BP.js → chunk-B5X2RLJG.js} +9 -1
  12. package/dist/chunks/{chunk-TCOLHD7N.js → chunk-BIOKXS3M.js} +2 -2
  13. package/dist/chunks/{chunk-BVYR7IFN.js → chunk-C3NT37C3.js} +24 -3
  14. package/dist/chunks/{chunk-5YILQTHE.js → chunk-CIDSF47D.js} +29 -9
  15. package/dist/chunks/{chunk-AMX4OQAW.js → chunk-CTZRIDMY.js} +7 -7
  16. package/dist/chunks/{chunk-XUT4HXVE.js → chunk-CZT33FZG.js} +8 -8
  17. package/dist/chunks/{chunk-CGFPFBT2.js → chunk-D4ZFRBB4.js} +11 -2
  18. package/dist/chunks/{chunk-V7J6U4XC.js → chunk-DO62DG26.js} +1 -1
  19. package/dist/chunks/{chunk-Z6XZWPXK.js → chunk-DZR37KXT.js} +51 -2
  20. package/dist/chunks/{chunk-MD5VPXXT.js → chunk-EDWU7OM4.js} +5 -5
  21. package/dist/chunks/chunk-EIY2SKD3.js +164 -0
  22. package/dist/chunks/{chunk-A55OZVYX.js → chunk-EY2ZGSCP.js} +2 -2
  23. package/dist/chunks/{chunk-RWKP7UO4.js → chunk-FFHJGWDK.js} +6 -2
  24. package/dist/chunks/{chunk-KWHWNOTY.js → chunk-KDU4EF66.js} +4 -4
  25. package/dist/chunks/{chunk-65ILXEIN.js → chunk-L5IETLWP.js} +5 -5
  26. package/dist/chunks/{chunk-GIHTHYXY.js → chunk-NMWQUFPF.js} +1 -1
  27. package/dist/chunks/{chunk-QQCOVMMT.js → chunk-OLKXMZ6J.js} +1 -1
  28. package/dist/chunks/{chunk-ZNJ4JAPT.js → chunk-PK5QQOMN.js} +3 -3
  29. package/dist/chunks/{chunk-PPDE4IVT.js → chunk-PNMJFFNB.js} +1 -1
  30. package/dist/chunks/{chunk-WJ4TIAVA.js → chunk-RNYPCQZ3.js} +1 -1
  31. package/dist/chunks/{chunk-2XEQR54X.js → chunk-SWCULW6S.js} +1 -1
  32. package/dist/chunks/{chunk-SHKGYGM4.js → chunk-TEF3NBG3.js} +3 -3
  33. package/dist/chunks/{chunk-M5NPD55W.js → chunk-TUQKGAK3.js} +1 -1
  34. package/dist/chunks/{chunk-ZPBEUOBM.js → chunk-W6EXQDV5.js} +1 -1
  35. package/dist/chunks/{chunk-7XR26JST.js → chunk-XVS52NMZ.js} +1 -1
  36. package/dist/chunks/{chunk-SZHQK6GL.js → chunk-XZ6PQBU6.js} +59 -13
  37. package/dist/cli/figure.js +26 -25
  38. package/dist/cli/fold.js +6 -5
  39. package/dist/figure.js +20 -19
  40. package/dist/figureData.js +23 -22
  41. package/dist/figureScene.js +15 -14
  42. package/dist/figureSettings.js +7 -6
  43. package/dist/gbzCut.js +4 -3
  44. package/dist/gbzWindow.js +3 -2
  45. package/dist/gfa/gfaConverter.js +3 -2
  46. package/dist/gfa/gfaTables.js +2 -1
  47. package/dist/gfa/graphTables.js +2 -1
  48. package/dist/gfa/walkStops.js +28 -0
  49. package/dist/index.js +60 -42
  50. package/dist/layout/forceCache.js +7 -6
  51. package/dist/layout/trimToWindow.js +1 -1
  52. package/dist/layout/tubeMapLayout.js +5 -4
  53. package/dist/layout/walkRowDraw.js +13 -4
  54. package/dist/layout/walkRowLayout.js +4 -3
  55. package/dist/layout/walkRows.js +3 -2
  56. package/dist/layout/walkStrip.js +8 -7
  57. package/dist/layoutModes.js +8 -7
  58. package/dist/pathAnchoring.js +1 -1
  59. package/dist/pathColors.js +2 -2
  60. package/dist/pipeline.js +6 -5
  61. package/dist/referenceStrip.js +4 -4
  62. package/dist/renderer/GeometryBuilder.js +3 -3
  63. package/dist/tubeMap/bundle.js +6 -5
  64. package/dist/tubeMap/coarsen.js +6 -5
  65. package/dist/tubeMap/deviations.js +6 -5
  66. package/dist/tubeMap/draw.js +5 -4
  67. package/dist/tubeMap/nodeColors.js +4 -4
  68. package/dist/types/gfa/graphTables.d.ts +3 -0
  69. package/dist/types/gfa/walkStops.d.ts +59 -0
  70. package/dist/types/index.d.ts +4 -2
  71. package/dist/types/layout/walkRowDraw.d.ts +14 -1
  72. package/dist/types/layout/walkRows.d.ts +4 -1
  73. package/dist/types/types.d.ts +19 -0
  74. package/dist/types/version.d.ts +1 -1
  75. package/dist/types/walkHighlight.d.ts +2 -0
  76. package/dist/types/walkKey.d.ts +1 -1
  77. package/dist/version.js +1 -1
  78. package/dist/viewport.js +7 -6
  79. package/dist/walkEncoding.js +4 -4
  80. package/dist/walkHighlight.js +6 -5
  81. package/dist/walkKey.js +2 -1
  82. package/package.json +1 -1
package/dist/figure.js CHANGED
@@ -1,9 +1,9 @@
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  import {
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  figureSvg
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- } from "./chunks/chunk-7JGLJK44.js";
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+ } from "./chunks/chunk-5LTZVKZQ.js";
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  import "./chunks/chunk-V4YML3GR.js";
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- import "./chunks/chunk-SHKGYGM4.js";
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- import "./chunks/chunk-SZHQK6GL.js";
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+ import "./chunks/chunk-TEF3NBG3.js";
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+ import "./chunks/chunk-XZ6PQBU6.js";
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@@ -12,35 +12,36 @@ import "./chunks/chunk-PSCSZSVK.js";
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  import "./chunks/chunk-3VCKBSML.js";
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- import "./chunks/chunk-PTQPTDZH.js";
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- import "./chunks/chunk-WONB6LMC.js";
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- import "./chunks/chunk-XUT4HXVE.js";
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+ import "./chunks/chunk-6OP4HPXG.js";
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+ import "./chunks/chunk-AI5PTOSV.js";
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+ import "./chunks/chunk-CZT33FZG.js";
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  import "./chunks/chunk-LOCJN3BZ.js";
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- import "./chunks/chunk-BVYR7IFN.js";
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- import "./chunks/chunk-V7J6U4XC.js";
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- import "./chunks/chunk-CGFPFBT2.js";
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- import "./chunks/chunk-2XEQR54X.js";
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+ import "./chunks/chunk-C3NT37C3.js";
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+ import "./chunks/chunk-DO62DG26.js";
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+ import "./chunks/chunk-D4ZFRBB4.js";
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+ import "./chunks/chunk-SWCULW6S.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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  import "./chunks/chunk-WA5WNP6V.js";
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- import "./chunks/chunk-QQCOVMMT.js";
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- import "./chunks/chunk-5YILQTHE.js";
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- import "./chunks/chunk-IYALCKNB.js";
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+ import "./chunks/chunk-OLKXMZ6J.js";
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+ import "./chunks/chunk-CIDSF47D.js";
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+ import "./chunks/chunk-3GP3KT5L.js";
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  import "./chunks/chunk-CRCD3ODN.js";
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- import "./chunks/chunk-ZPBEUOBM.js";
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- import "./chunks/chunk-KWHWNOTY.js";
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+ import "./chunks/chunk-W6EXQDV5.js";
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+ import "./chunks/chunk-KDU4EF66.js";
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  import "./chunks/chunk-3PZSBNLI.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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- import "./chunks/chunk-RWKP7UO4.js";
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+ import "./chunks/chunk-FFHJGWDK.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-5I3K4R2G.js";
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- import "./chunks/chunk-DBLV7PGG.js";
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- import "./chunks/chunk-LGJBB5BP.js";
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+ import "./chunks/chunk-3XSRT7RQ.js";
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+ import "./chunks/chunk-B5X2RLJG.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-Z6XZWPXK.js";
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+ import "./chunks/chunk-DZR37KXT.js";
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+ import "./chunks/chunk-EIY2SKD3.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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@@ -3,49 +3,50 @@ import {
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  gfaFigureData,
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  laidOutGraph,
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  walkLayers
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- } from "./chunks/chunk-AMX4OQAW.js";
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+ } from "./chunks/chunk-CTZRIDMY.js";
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  import "./chunks/chunk-JMABOQWL.js";
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- import "./chunks/chunk-MD5VPXXT.js";
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- import "./chunks/chunk-GJU6BJJA.js";
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- import "./chunks/chunk-ZNJ4JAPT.js";
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+ import "./chunks/chunk-EDWU7OM4.js";
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+ import "./chunks/chunk-PK5QQOMN.js";
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+ import "./chunks/chunk-GJU6BJJA.js";
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  import "./chunks/chunk-GJLZ2MKE.js";
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  import "./chunks/chunk-MYLAJDKB.js";
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  import "./chunks/chunk-C44YRP5F.js";
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- import "./chunks/chunk-M5NPD55W.js";
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- import "./chunks/chunk-GIHTHYXY.js";
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+ import "./chunks/chunk-TUQKGAK3.js";
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+ import "./chunks/chunk-NMWQUFPF.js";
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  import "./chunks/chunk-HNWJ4B7S.js";
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- import "./chunks/chunk-PTQPTDZH.js";
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- import "./chunks/chunk-WONB6LMC.js";
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- import "./chunks/chunk-XUT4HXVE.js";
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+ import "./chunks/chunk-6OP4HPXG.js";
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+ import "./chunks/chunk-AI5PTOSV.js";
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+ import "./chunks/chunk-CZT33FZG.js";
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- import "./chunks/chunk-BVYR7IFN.js";
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- import "./chunks/chunk-V7J6U4XC.js";
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- import "./chunks/chunk-CGFPFBT2.js";
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- import "./chunks/chunk-2XEQR54X.js";
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+ import "./chunks/chunk-C3NT37C3.js";
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+ import "./chunks/chunk-DO62DG26.js";
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+ import "./chunks/chunk-D4ZFRBB4.js";
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+ import "./chunks/chunk-SWCULW6S.js";
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- import "./chunks/chunk-QQCOVMMT.js";
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- import "./chunks/chunk-5YILQTHE.js";
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- import "./chunks/chunk-IYALCKNB.js";
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+ import "./chunks/chunk-OLKXMZ6J.js";
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+ import "./chunks/chunk-CIDSF47D.js";
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+ import "./chunks/chunk-3GP3KT5L.js";
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  import "./chunks/chunk-CRCD3ODN.js";
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- import "./chunks/chunk-ZPBEUOBM.js";
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- import "./chunks/chunk-KWHWNOTY.js";
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+ import "./chunks/chunk-W6EXQDV5.js";
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+ import "./chunks/chunk-KDU4EF66.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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- import "./chunks/chunk-RWKP7UO4.js";
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+ import "./chunks/chunk-FFHJGWDK.js";
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  import "./chunks/chunk-5I3K4R2G.js";
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- import "./chunks/chunk-DBLV7PGG.js";
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- import "./chunks/chunk-LGJBB5BP.js";
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+ import "./chunks/chunk-3XSRT7RQ.js";
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+ import "./chunks/chunk-B5X2RLJG.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-234NFZS4.js";
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- import "./chunks/chunk-Z6XZWPXK.js";
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+ import "./chunks/chunk-DZR37KXT.js";
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+ import "./chunks/chunk-EIY2SKD3.js";
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@@ -1,32 +1,33 @@
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  import {
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  figureScene
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- } from "./chunks/chunk-XUT4HXVE.js";
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+ } from "./chunks/chunk-CZT33FZG.js";
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- import "./chunks/chunk-BVYR7IFN.js";
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- import "./chunks/chunk-V7J6U4XC.js";
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- import "./chunks/chunk-CGFPFBT2.js";
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- import "./chunks/chunk-2XEQR54X.js";
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+ import "./chunks/chunk-C3NT37C3.js";
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+ import "./chunks/chunk-DO62DG26.js";
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+ import "./chunks/chunk-D4ZFRBB4.js";
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+ import "./chunks/chunk-SWCULW6S.js";
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- import "./chunks/chunk-QQCOVMMT.js";
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- import "./chunks/chunk-5YILQTHE.js";
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- import "./chunks/chunk-IYALCKNB.js";
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+ import "./chunks/chunk-OLKXMZ6J.js";
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+ import "./chunks/chunk-CIDSF47D.js";
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+ import "./chunks/chunk-3GP3KT5L.js";
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- import "./chunks/chunk-ZPBEUOBM.js";
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- import "./chunks/chunk-KWHWNOTY.js";
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+ import "./chunks/chunk-W6EXQDV5.js";
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+ import "./chunks/chunk-KDU4EF66.js";
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- import "./chunks/chunk-RWKP7UO4.js";
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+ import "./chunks/chunk-FFHJGWDK.js";
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- import "./chunks/chunk-LGJBB5BP.js";
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+ import "./chunks/chunk-3XSRT7RQ.js";
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+ import "./chunks/chunk-EIY2SKD3.js";
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@@ -1,19 +1,20 @@
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- } from "./chunks/chunk-ZPBEUOBM.js";
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- import "./chunks/chunk-KWHWNOTY.js";
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+ } from "./chunks/chunk-W6EXQDV5.js";
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+ import "./chunks/chunk-KDU4EF66.js";
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+ import "./chunks/chunk-FFHJGWDK.js";
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+ import "./chunks/chunk-3XSRT7RQ.js";
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+ import "./chunks/chunk-B5X2RLJG.js";
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package/dist/gbzCut.js CHANGED
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- import "./chunks/chunk-GIHTHYXY.js";
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+ } from "./chunks/chunk-TUQKGAK3.js";
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+ import "./chunks/chunk-NMWQUFPF.js";
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package/dist/gbzWindow.js CHANGED
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+ } from "./chunks/chunk-NMWQUFPF.js";
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- } from "../chunks/chunk-DBLV7PGG.js";
4
+ } from "../chunks/chunk-3XSRT7RQ.js";
5
+ import "../chunks/chunk-EIY2SKD3.js";
5
6
  import "../chunks/chunk-ZPZ7GNBT.js";
6
7
  import "../chunks/chunk-4XWZNPQ2.js";
7
8
  export {
@@ -0,0 +1,28 @@
1
+ import {
2
+ END_STOP_TAG,
3
+ GAP_CAUSE_TEXT,
4
+ OUTSIDE_TEXT,
5
+ START_STOP_TAG,
6
+ StopColumns,
7
+ gapParts,
8
+ parseStopTag,
9
+ stopAt,
10
+ stopFields,
11
+ stopTag,
12
+ walkStopFields,
13
+ walkStopTags
14
+ } from "../chunks/chunk-EIY2SKD3.js";
15
+ export {
16
+ END_STOP_TAG,
17
+ GAP_CAUSE_TEXT,
18
+ OUTSIDE_TEXT,
19
+ START_STOP_TAG,
20
+ StopColumns,
21
+ gapParts,
22
+ parseStopTag,
23
+ stopAt,
24
+ stopFields,
25
+ stopTag,
26
+ walkStopFields,
27
+ walkStopTags
28
+ };
package/dist/index.js CHANGED
@@ -1,17 +1,27 @@
1
1
  import {
2
2
  wheelZoomFactor
3
3
  } from "./chunks/chunk-TDQLINVI.js";
4
+ import {
5
+ connectorAt,
6
+ drawLitConnector,
7
+ drawTubeMapConnectors,
8
+ tubeMapConnectors
9
+ } from "./chunks/chunk-2ZT7ZF7A.js";
4
10
  import {
5
11
  drawTubeMap,
6
12
  drawTubeMapHighlight,
7
13
  tubeMapMismatchAt,
8
14
  tubeMapPicture,
9
15
  tubeMapTrackAt
10
- } from "./chunks/chunk-65ILXEIN.js";
16
+ } from "./chunks/chunk-L5IETLWP.js";
11
17
  import {
12
18
  tubeMapFrame,
13
19
  tubeMapNodeAt
14
20
  } from "./chunks/chunk-SI3BB4DO.js";
21
+ import {
22
+ referenceKnots,
23
+ warpX
24
+ } from "./chunks/chunk-MYDHU2UV.js";
15
25
  import {
16
26
  drawTubeMapGenes,
17
27
  tubeMapGenes
@@ -19,11 +29,7 @@ import {
19
29
  import "./chunks/chunk-BX4AUMZE.js";
20
30
  import {
21
31
  tubeMapNodeColors
22
- } from "./chunks/chunk-7XR26JST.js";
23
- import {
24
- referenceKnots,
25
- warpX
26
- } from "./chunks/chunk-MYDHU2UV.js";
32
+ } from "./chunks/chunk-XVS52NMZ.js";
27
33
  import {
28
34
  drawTubeMapRuler,
29
35
  referenceBoxes,
@@ -32,26 +38,20 @@ import {
32
38
  } from "./chunks/chunk-HSVFCA2J.js";
33
39
  import {
34
40
  bundleRoutes
35
- } from "./chunks/chunk-TCOLHD7N.js";
36
- import {
37
- connectorAt,
38
- drawLitConnector,
39
- drawTubeMapConnectors,
40
- tubeMapConnectors
41
- } from "./chunks/chunk-2ZT7ZF7A.js";
41
+ } from "./chunks/chunk-BIOKXS3M.js";
42
42
  import {
43
43
  createForceLayoutCache
44
- } from "./chunks/chunk-WJ4TIAVA.js";
44
+ } from "./chunks/chunk-RNYPCQZ3.js";
45
45
  import {
46
46
  graphBubbles,
47
47
  superbubblesFromGraph
48
- } from "./chunks/chunk-EHXBZ5JZ.js";
48
+ } from "./chunks/chunk-2Q22S52W.js";
49
49
  import {
50
50
  bubblesFromGraph
51
51
  } from "./chunks/chunk-RFG42VIO.js";
52
52
  import {
53
53
  bubbleSubgraph
54
- } from "./chunks/chunk-PPDE4IVT.js";
54
+ } from "./chunks/chunk-PNMJFFNB.js";
55
55
  import {
56
56
  genesFromBed,
57
57
  genesFromGff3Lines,
@@ -73,7 +73,7 @@ import {
73
73
  drawReferenceStrip,
74
74
  referenceStripBlocks,
75
75
  stripBlockAt
76
- } from "./chunks/chunk-A54O52XZ.js";
76
+ } from "./chunks/chunk-3UST3ZQE.js";
77
77
  import {
78
78
  LAYOUT_QUALITIES
79
79
  } from "./chunks/chunk-K5SIJGAE.js";
@@ -83,7 +83,7 @@ import {
83
83
  } from "./chunks/chunk-AZFVORTC.js";
84
84
  import {
85
85
  figureSvg
86
- } from "./chunks/chunk-7JGLJK44.js";
86
+ } from "./chunks/chunk-5LTZVKZQ.js";
87
87
  import {
88
88
  svgCanvas
89
89
  } from "./chunks/chunk-V4YML3GR.js";
@@ -98,7 +98,7 @@ import {
98
98
  walkStripApplies,
99
99
  walkStripFrame,
100
100
  walkStripLabelsTree
101
- } from "./chunks/chunk-SHKGYGM4.js";
101
+ } from "./chunks/chunk-TEF3NBG3.js";
102
102
  import {
103
103
  BAR_PX,
104
104
  CALL_TICK,
@@ -113,6 +113,7 @@ import {
113
113
  alongRow,
114
114
  callTickInk,
115
115
  coalesceRuns,
116
+ gapStyle,
116
117
  genesOnRow,
117
118
  placeRowGenes,
118
119
  readoutPlacement,
@@ -125,7 +126,7 @@ import {
125
126
  walkRowsKey,
126
127
  walkRowsKeyTree,
127
128
  walkRowsTree
128
- } from "./chunks/chunk-SZHQK6GL.js";
129
+ } from "./chunks/chunk-XZ6PQBU6.js";
129
130
  import {
130
131
  Canvas2DRenderer
131
132
  } from "./chunks/chunk-EJRJAAN7.js";
@@ -158,7 +159,7 @@ import {
158
159
  import {
159
160
  figureData,
160
161
  gfaFigureData
161
- } from "./chunks/chunk-AMX4OQAW.js";
162
+ } from "./chunks/chunk-CTZRIDMY.js";
162
163
  import {
163
164
  LAYOUT_ENGINES,
164
165
  layoutEngine
@@ -168,10 +169,10 @@ import {
168
169
  LAYOUT_MODES,
169
170
  layoutModeByValue,
170
171
  modeUsesLayoutEngine
171
- } from "./chunks/chunk-MD5VPXXT.js";
172
- import "./chunks/chunk-GJU6BJJA.js";
173
- import "./chunks/chunk-ZNJ4JAPT.js";
172
+ } from "./chunks/chunk-EDWU7OM4.js";
173
+ import "./chunks/chunk-PK5QQOMN.js";
174
174
  import "./chunks/chunk-A7H753BA.js";
175
+ import "./chunks/chunk-GJU6BJJA.js";
175
176
  import "./chunks/chunk-GJLZ2MKE.js";
176
177
  import "./chunks/chunk-MYLAJDKB.js";
177
178
  import "./chunks/chunk-C44YRP5F.js";
@@ -182,7 +183,7 @@ import {
182
183
  cutGbzRegion,
183
184
  openGbz,
184
185
  parseRegion
185
- } from "./chunks/chunk-M5NPD55W.js";
186
+ } from "./chunks/chunk-TUQKGAK3.js";
186
187
  import {
187
188
  compactTables,
188
189
  cutWindowGFA,
@@ -191,11 +192,11 @@ import {
191
192
  referencePathQuery,
192
193
  referenceSamplesOf,
193
194
  resolveReferenceSample
194
- } from "./chunks/chunk-GIHTHYXY.js";
195
+ } from "./chunks/chunk-NMWQUFPF.js";
195
196
  import "./chunks/chunk-HNWJ4B7S.js";
196
197
  import {
197
198
  version
198
- } from "./chunks/chunk-PTQPTDZH.js";
199
+ } from "./chunks/chunk-6OP4HPXG.js";
199
200
  import {
200
201
  axisScaleOf,
201
202
  contains,
@@ -203,8 +204,8 @@ import {
203
204
  screenToLayout,
204
205
  viewportOf,
205
206
  zoomAbout
206
- } from "./chunks/chunk-WONB6LMC.js";
207
- import "./chunks/chunk-XUT4HXVE.js";
207
+ } from "./chunks/chunk-AI5PTOSV.js";
208
+ import "./chunks/chunk-CZT33FZG.js";
208
209
  import {
209
210
  layoutGeometryInputs
210
211
  } from "./chunks/chunk-LOCJN3BZ.js";
@@ -212,7 +213,7 @@ import {
212
213
  facetLifts,
213
214
  walkHighlight,
214
215
  walkLift
215
- } from "./chunks/chunk-BVYR7IFN.js";
216
+ } from "./chunks/chunk-C3NT37C3.js";
216
217
  import {
217
218
  WALK_FIELDS,
218
219
  WALK_SCHEMES,
@@ -220,16 +221,16 @@ import {
220
221
  encodingSwatchCss,
221
222
  resolveEncoding,
222
223
  schemeCss
223
- } from "./chunks/chunk-V7J6U4XC.js";
224
+ } from "./chunks/chunk-DO62DG26.js";
224
225
  import {
225
226
  rangeText,
226
227
  walkKey,
227
228
  walkPosition
228
- } from "./chunks/chunk-CGFPFBT2.js";
229
+ } from "./chunks/chunk-D4ZFRBB4.js";
229
230
  import {
230
231
  buildGeometry,
231
232
  computeReferenceRamp
232
- } from "./chunks/chunk-2XEQR54X.js";
233
+ } from "./chunks/chunk-SWCULW6S.js";
233
234
  import "./chunks/chunk-G2FD7S3C.js";
234
235
  import {
235
236
  RAMP_GRADIENT_CSS,
@@ -242,16 +243,16 @@ import "./chunks/chunk-WA5WNP6V.js";
242
243
  import {
243
244
  walkRowLabels,
244
245
  walkRowsExtent
245
- } from "./chunks/chunk-QQCOVMMT.js";
246
+ } from "./chunks/chunk-OLKXMZ6J.js";
246
247
  import {
247
248
  filterSamples,
248
249
  walkRows
249
- } from "./chunks/chunk-5YILQTHE.js";
250
+ } from "./chunks/chunk-CIDSF47D.js";
250
251
  import {
251
252
  pathColorsLegible,
252
253
  pathLegend,
253
254
  walkLabelsOf
254
- } from "./chunks/chunk-IYALCKNB.js";
255
+ } from "./chunks/chunk-3GP3KT5L.js";
255
256
  import {
256
257
  NODE_WIDTHS,
257
258
  maxNodeWidthPx,
@@ -262,7 +263,7 @@ import {
262
263
  import {
263
264
  FIGURE_DEFAULTS,
264
265
  figureSpecSettings
265
- } from "./chunks/chunk-ZPBEUOBM.js";
266
+ } from "./chunks/chunk-W6EXQDV5.js";
266
267
  import {
267
268
  ENGINE_DEFAULTS,
268
269
  FIT_PADDING,
@@ -275,19 +276,19 @@ import {
275
276
  forceLayout,
276
277
  layoutExtent,
277
278
  loadGraph
278
- } from "./chunks/chunk-KWHWNOTY.js";
279
+ } from "./chunks/chunk-KDU4EF66.js";
279
280
  import "./chunks/chunk-3PZSBNLI.js";
280
281
  import "./chunks/chunk-CKUVEHSS.js";
281
282
  import "./chunks/chunk-OPPVSPEF.js";
282
283
  import "./chunks/chunk-VPE4AYP7.js";
283
- import "./chunks/chunk-RWKP7UO4.js";
284
+ import "./chunks/chunk-FFHJGWDK.js";
284
285
  import "./chunks/chunk-QYBZZI5H.js";
285
286
  import "./chunks/chunk-5I3K4R2G.js";
286
287
  import {
287
288
  graphFromTables,
288
289
  graphTablesGFA
289
- } from "./chunks/chunk-DBLV7PGG.js";
290
- import "./chunks/chunk-LGJBB5BP.js";
290
+ } from "./chunks/chunk-3XSRT7RQ.js";
291
+ import "./chunks/chunk-B5X2RLJG.js";
291
292
  import "./chunks/chunk-VX656OAZ.js";
292
293
  import {
293
294
  WELL_KNOWN_SAMPLES,
@@ -301,7 +302,16 @@ import {
301
302
  } from "./chunks/chunk-234NFZS4.js";
302
303
  import {
303
304
  gfaTables
304
- } from "./chunks/chunk-Z6XZWPXK.js";
305
+ } from "./chunks/chunk-DZR37KXT.js";
306
+ import {
307
+ END_STOP_TAG,
308
+ GAP_CAUSE_TEXT,
309
+ OUTSIDE_TEXT,
310
+ START_STOP_TAG,
311
+ gapParts,
312
+ parseStopTag,
313
+ stopTag
314
+ } from "./chunks/chunk-EIY2SKD3.js";
305
315
  import {
306
316
  PathVisits,
307
317
  PathVisitsBuilder
@@ -359,6 +369,7 @@ export {
359
369
  BUBBLE_SPREADS,
360
370
  COLOR_SCHEMES,
361
371
  Canvas2DRenderer,
372
+ END_STOP_TAG,
362
373
  ENGINE_DEFAULTS,
363
374
  EXON_COLOR,
364
375
  FACET_FIELDS,
@@ -368,6 +379,7 @@ export {
368
379
  FIGURE_DEFAULTS,
369
380
  FIT_PADDING,
370
381
  FORCE_LAYOUT_LABEL,
382
+ GAP_CAUSE_TEXT,
371
383
  HALO_FACTOR,
372
384
  HPRC_GBZ,
373
385
  LABELLED_ROW_PX,
@@ -379,12 +391,14 @@ export {
379
391
  LAYOUT_QUALITIES,
380
392
  LEGEND_INSET_PX,
381
393
  NODE_WIDTHS,
394
+ OUTSIDE_TEXT,
382
395
  PathVisits,
383
396
  PathVisitsBuilder,
384
397
  RAMP_GRADIENT_CSS,
385
398
  REFERENCE_RAMP_MAX_HUE,
386
399
  REFERENCE_STRIP_ZONE_PX,
387
400
  ROW_HEIGHT_PX,
401
+ START_STOP_TAG,
388
402
  BAR_PX as WALK_BAR_PX,
389
403
  CALL_TICK as WALK_CALL_TICK,
390
404
  DISAGREES as WALK_DISAGREES,
@@ -454,6 +468,8 @@ export {
454
468
  fitTransform,
455
469
  forceLayout,
456
470
  formatBp,
471
+ gapParts,
472
+ gapStyle,
457
473
  geneCoverageNote,
458
474
  genePins,
459
475
  genesFromBed,
@@ -487,6 +503,7 @@ export {
487
503
  panSNHaplotype,
488
504
  panSNSample,
489
505
  parseRegion,
506
+ parseStopTag,
490
507
  pathColorsLegible,
491
508
  pathLegend,
492
509
  placeRowGenes,
@@ -515,6 +532,7 @@ export {
515
532
  screenToLayout,
516
533
  segmentAt,
517
534
  serializeEl,
535
+ stopTag,
518
536
  stressLayout,
519
537
  stripBlockAt,
520
538
  stripGeneGaps,
@@ -1,18 +1,19 @@
1
1
  import {
2
2
  createForceLayoutCache
3
- } from "../chunks/chunk-WJ4TIAVA.js";
4
- import "../chunks/chunk-KWHWNOTY.js";
3
+ } from "../chunks/chunk-RNYPCQZ3.js";
4
+ import "../chunks/chunk-KDU4EF66.js";
5
5
  import "../chunks/chunk-3PZSBNLI.js";
6
6
  import "../chunks/chunk-CKUVEHSS.js";
7
7
  import "../chunks/chunk-OPPVSPEF.js";
8
8
  import "../chunks/chunk-VPE4AYP7.js";
9
- import "../chunks/chunk-RWKP7UO4.js";
9
+ import "../chunks/chunk-FFHJGWDK.js";
10
10
  import "../chunks/chunk-QYBZZI5H.js";
11
11
  import "../chunks/chunk-5I3K4R2G.js";
12
- import "../chunks/chunk-DBLV7PGG.js";
13
- import "../chunks/chunk-LGJBB5BP.js";
12
+ import "../chunks/chunk-3XSRT7RQ.js";
13
+ import "../chunks/chunk-B5X2RLJG.js";
14
14
  import "../chunks/chunk-VX656OAZ.js";
15
- import "../chunks/chunk-Z6XZWPXK.js";
15
+ import "../chunks/chunk-DZR37KXT.js";
16
+ import "../chunks/chunk-EIY2SKD3.js";
16
17
  import "../chunks/chunk-ZPZ7GNBT.js";
17
18
  import "../chunks/chunk-BZFOFC4D.js";
18
19
  import "../chunks/chunk-HKYXWZQS.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  pathOrigin,
3
3
  trimOrigins
4
- } from "../chunks/chunk-LGJBB5BP.js";
4
+ } from "../chunks/chunk-B5X2RLJG.js";
5
5
  import {
6
6
  PathVisitsBuilder
7
7
  } from "../chunks/chunk-ZPZ7GNBT.js";